Wall clock time and date at job start Tue Mar 31 2020 18:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46839 * 2 1 4 4 C 1.52995 * 109.47295 * 119.99717 * 2 1 3 5 5 N 1.46894 * 109.47329 * 176.06534 * 4 2 1 6 6 C 1.49013 * 110.96884 * 301.72927 * 5 4 2 7 7 C 1.54942 * 103.00154 * 200.30045 * 6 5 4 8 8 C 1.54594 * 103.08624 * 37.39480 * 7 6 5 9 9 C 1.47895 * 111.00567 * 184.28634 * 5 4 2 10 10 H 1.09000 * 110.08061 * 26.39644 * 9 5 4 11 11 C 1.50700 * 109.91930 * 265.19848 * 9 5 4 12 12 O 1.21286 * 119.99697 * 0.95252 * 11 9 5 13 13 N 1.34773 * 120.00470 * 180.95077 * 11 9 5 14 14 C 1.46497 * 120.00175 * 179.97438 * 13 11 9 15 15 H 1.08997 * 110.56187 * 32.10268 * 14 13 11 16 16 C 1.54856 * 110.63209 * 269.02726 * 14 13 11 17 17 C 1.55838 * 103.44780 * 241.51518 * 16 14 13 18 18 H 1.09003 * 115.56231 * 158.81162 * 17 16 14 19 19 C 1.55847 * 105.73951 * 287.98221 * 17 16 14 20 20 C 1.55873 * 102.96810 * 71.13426 * 19 17 16 21 21 C 1.55843 * 103.53184 * 0.88370 * 20 19 17 22 22 H 1.09000 * 116.12725 * 158.54650 * 21 20 19 23 23 N 1.50231 * 101.05007 * 32.33007 * 21 20 19 24 24 C 1.36936 * 130.83879 * 126.05623 * 23 21 20 25 25 H 1.08007 * 119.99915 * 0.02562 * 24 23 21 26 26 C 1.38813 * 120.00200 * 180.02562 * 24 23 21 27 27 N 1.31614 * 120.00101 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 120.00019 * 180.02562 * 26 24 23 29 29 H 1.48502 * 109.47181 * 89.99773 * 28 26 24 30 30 H 1.48500 * 109.46970 * 209.99632 * 28 26 24 31 31 H 1.48501 * 109.47270 * 329.99709 * 28 26 24 32 32 H 1.08992 * 109.47373 * 304.93052 * 1 2 3 33 33 H 1.09002 * 109.47373 * 64.93554 * 1 2 3 34 34 H 1.08998 * 109.46502 * 184.93247 * 1 2 3 35 35 H 1.09000 * 109.47047 * 240.00213 * 2 1 3 36 36 H 1.09001 * 109.47341 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47240 * 300.00298 * 3 2 1 38 38 H 1.08997 * 109.47258 * 59.99746 * 3 2 1 39 39 H 1.09004 * 109.47204 * 56.06208 * 4 2 1 40 40 H 1.08998 * 109.46998 * 296.06267 * 4 2 1 41 41 H 1.09000 * 110.86396 * 81.89386 * 6 5 4 42 42 H 1.08998 * 110.67797 * 318.61412 * 6 5 4 43 43 H 1.09008 * 110.71872 * 278.94310 * 7 6 5 44 44 H 1.09000 * 110.72138 * 155.84320 * 7 6 5 45 45 H 1.08996 * 110.30955 * 96.86963 * 8 7 6 46 46 H 1.08999 * 110.30680 * 219.04181 * 8 7 6 47 47 H 0.97001 * 119.99598 * 0.02562 * 13 11 9 48 48 H 1.09009 * 110.62071 * 0.02562 * 16 14 13 49 49 H 1.08994 * 110.62919 * 123.01429 * 16 14 13 50 50 H 1.08997 * 110.62777 * 190.49869 * 19 17 16 51 51 H 1.08996 * 110.62756 * 313.52767 * 19 17 16 52 52 H 1.09000 * 111.10429 * 242.11407 * 20 19 17 53 53 H 1.09007 * 110.07279 * 119.15360 * 20 19 17 54 54 H 0.97001 * 120.00477 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5059 -0.8040 1.2027 6 6 3.9610 -1.5189 -0.0230 7 6 5.3974 -1.9663 0.3474 8 6 5.2725 -2.3423 1.8417 9 6 4.0293 -1.5851 2.3443 10 1 3.2767 -2.2944 2.6888 11 6 4.4128 -0.6575 3.4683 12 8 4.2525 0.5387 3.3487 13 7 4.9339 -1.1571 4.6064 14 6 5.3072 -0.2553 5.6989 15 1 4.6473 0.6119 5.7218 16 6 6.7860 0.1837 5.5629 17 6 7.4468 -0.3608 6.8649 18 1 8.5289 -0.4865 6.8261 19 6 6.9159 0.5430 8.0183 20 6 5.4235 0.1107 8.1427 21 6 5.2760 -1.0051 7.0648 22 1 4.4460 -1.6982 7.2019 23 7 6.6492 -1.6138 7.0906 24 6 7.0505 -2.9113 7.2654 25 1 6.3154 -3.6882 7.4159 26 6 8.4018 -3.2281 7.2491 27 7 9.2976 -2.2815 7.0652 28 14 8.9491 -4.9983 7.4869 29 1 9.0292 -5.6733 6.1665 30 1 10.2845 -5.0206 8.1360 31 1 7.9687 -5.7083 8.3471 32 1 -0.3634 0.5884 0.8425 33 1 -0.3634 0.4354 -0.9309 34 1 -0.3632 -1.0239 0.0884 35 1 1.8934 -0.5138 -0.8900 36 1 3.1300 1.4426 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6766 1.9564 0.8899 39 1 1.6203 -1.7265 1.2853 40 1 1.7355 -0.1682 2.1378 41 1 3.9765 -0.8469 -0.8811 42 1 3.3279 -2.3837 -0.2216 43 1 6.1033 -1.1465 0.2136 44 1 5.6965 -2.8315 -0.2443 45 1 5.1303 -3.4175 1.9507 46 1 6.1586 -2.0197 2.3883 47 1 5.0624 -2.1139 4.7019 48 1 7.2415 -0.2694 4.6822 49 1 6.8616 1.2701 5.5191 50 1 7.4668 0.3532 8.9394 51 1 6.9791 1.5953 7.7416 52 1 4.7543 0.9437 7.9273 53 1 5.2317 -0.2896 9.1383 54 1 10.2419 -2.5029 7.0535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097405073.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:09 Heat of formation + Delta-G solvation = -11.818221 kcal Electronic energy + Delta-G solvation = -31019.520880 eV Core-core repulsion = 27184.220859 eV Total energy + Delta-G solvation = -3835.300021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.47052 -40.50120 -38.90758 -36.52002 -35.19655 -34.36056 -32.08820 -31.03310 -30.93632 -30.16885 -28.84235 -27.93188 -26.35527 -26.08324 -23.90213 -22.49532 -22.34546 -21.48949 -20.76461 -20.46654 -20.22646 -18.83194 -18.14608 -17.43499 -17.09472 -16.74946 -16.20418 -15.97510 -15.78198 -15.40827 -15.18943 -15.00295 -14.73528 -14.48279 -14.24961 -13.94930 -13.78936 -13.67384 -13.59997 -13.12661 -12.91243 -12.89047 -12.77899 -12.74050 -12.70489 -12.48364 -12.41983 -12.14450 -12.09526 -11.96043 -11.89516 -11.82170 -11.74647 -11.65082 -11.58579 -11.39568 -11.14128 -10.92804 -10.88401 -10.53444 -9.85681 -9.30300 -8.84741 -7.73333 -5.13321 1.50233 1.51216 1.59086 1.77604 2.21871 2.51970 3.07578 3.39783 3.46622 3.57323 3.63760 3.89795 3.94638 4.02613 4.06960 4.10147 4.15535 4.24719 4.29536 4.31321 4.45559 4.49503 4.52836 4.58147 4.65052 4.70298 4.72177 4.74665 4.82074 4.84642 4.85114 4.87689 4.91944 5.00121 5.06256 5.08322 5.08790 5.14003 5.18001 5.20602 5.23318 5.26919 5.38512 5.46581 5.53684 5.54056 5.63497 5.74853 5.88213 5.91162 6.10960 6.28700 6.76490 7.07801 7.43390 7.74764 8.60954 9.33894 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.003233 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.259274 B = 8659.408266 C = 9743.263452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.133 4.133 4 C 0.056 3.944 5 N -0.510 5.510 6 C 0.041 3.959 7 C -0.119 4.119 8 C -0.122 4.122 9 C 0.054 3.946 10 H 0.091 0.909 11 C 0.515 3.485 12 O -0.567 6.567 13 N -0.708 5.708 14 C 0.143 3.857 15 H 0.080 0.920 16 C -0.130 4.130 17 C 0.141 3.859 18 H 0.114 0.886 19 C -0.131 4.131 20 C -0.119 4.119 21 C 0.128 3.872 22 H 0.102 0.898 23 N -0.608 5.608 24 C -0.212 4.212 25 H 0.086 0.914 26 C -0.067 4.067 27 N -0.948 5.948 28 Si 0.973 3.027 29 H -0.289 1.289 30 H -0.303 1.303 31 H -0.272 1.272 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.403 0.597 48 H 0.032 0.968 49 H 0.060 0.940 50 H 0.040 0.960 51 H 0.067 0.933 52 H 0.080 0.920 53 H 0.059 0.941 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.277 0.743 -13.509 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.190 4.190 4 C -0.072 4.072 5 N -0.235 5.235 6 C -0.086 4.086 7 C -0.157 4.157 8 C -0.160 4.160 9 C -0.058 4.058 10 H 0.109 0.891 11 C 0.302 3.698 12 O -0.445 6.445 13 N -0.358 5.358 14 C 0.036 3.964 15 H 0.098 0.902 16 C -0.171 4.171 17 C 0.034 3.966 18 H 0.131 0.869 19 C -0.171 4.171 20 C -0.159 4.159 21 C 0.020 3.980 22 H 0.120 0.880 23 N -0.330 5.330 24 C -0.341 4.341 25 H 0.103 0.897 26 C -0.259 4.259 27 N -0.598 5.598 28 Si 0.803 3.197 29 H -0.216 1.216 30 H -0.230 1.230 31 H -0.197 1.197 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.072 0.928 47 H 0.238 0.762 48 H 0.051 0.949 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.086 0.914 52 H 0.098 0.902 53 H 0.078 0.922 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.018 1.894 -13.534 20.305 hybrid contribution 0.705 -1.806 0.602 2.030 sum -14.312 0.088 -12.932 19.290 Atomic orbital electron populations 1.21793 0.93915 1.02139 1.02224 1.21112 0.96143 0.96369 0.96979 1.21648 1.00967 0.95744 1.00647 1.22360 0.86505 0.99144 0.99152 1.64412 1.10734 1.47426 1.00916 1.23374 0.95104 0.97217 0.92898 1.22480 0.96992 1.01773 0.94482 1.22398 0.95493 1.00727 0.97404 1.22277 0.98967 0.93054 0.91478 0.89107 1.20954 0.76520 0.89233 0.83141 1.90623 1.55479 1.17384 1.81014 1.45972 1.63302 1.11122 1.15393 1.22350 0.94555 0.92447 0.87040 0.90181 1.23268 0.96106 0.98686 0.99013 1.23551 0.98466 0.83820 0.90765 0.86855 1.23107 0.96198 0.98644 0.99119 1.23005 0.96117 0.98081 0.98684 1.23355 0.88799 0.93290 0.92518 0.88016 1.46695 1.00935 1.02788 1.82552 1.19346 0.91389 0.83580 1.39796 0.89663 1.25414 0.95915 1.00785 1.03835 1.69724 1.00053 1.31768 1.58272 0.85136 0.76895 0.80258 0.77367 1.21595 1.23012 1.19657 0.93220 0.91445 0.91997 0.90163 0.93475 0.92206 0.94455 0.93624 0.92837 0.89074 0.91748 0.92234 0.88441 0.88413 0.92777 0.76182 0.94866 0.92161 0.94081 0.91442 0.90193 0.92222 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 2 C -0.09 -1.53 2.72 -10.79 -0.03 -1.56 16 3 C -0.13 -2.78 9.07 71.98 0.65 -2.12 16 4 C 0.06 1.20 4.25 86.30 0.37 1.56 16 5 N -0.51 -12.41 3.90 -861.14 -3.36 -15.77 16 6 C 0.04 0.75 5.36 86.56 0.46 1.21 16 7 C -0.12 -2.35 7.05 31.80 0.22 -2.13 16 8 C -0.12 -2.84 6.47 31.47 0.20 -2.64 16 9 C 0.05 1.39 2.88 44.31 0.13 1.52 16 10 H 0.09 1.98 7.68 -2.39 -0.02 1.97 16 11 C 0.52 17.40 6.99 87.66 0.61 18.01 16 12 O -0.57 -23.28 16.11 -3.05 -0.05 -23.33 16 13 N -0.71 -24.04 4.94 -434.91 -2.15 -26.18 16 14 C 0.14 5.28 2.80 46.61 0.13 5.41 16 15 H 0.08 2.97 7.23 -2.39 -0.02 2.95 16 16 C -0.13 -5.45 6.24 32.21 0.20 -5.25 16 17 C 0.14 6.50 4.67 46.23 0.22 6.72 16 18 H 0.11 6.21 5.52 -2.39 -0.01 6.20 16 19 C -0.13 -5.16 6.53 32.57 0.21 -4.95 16 20 C -0.12 -4.11 6.47 32.57 0.21 -3.90 16 21 C 0.13 4.77 5.06 46.23 0.23 5.01 16 22 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 23 N -0.61 -28.42 2.98 -615.26 -1.83 -30.25 16 24 C -0.21 -10.90 10.59 84.03 0.89 -10.01 16 25 H 0.09 4.14 7.83 -2.91 -0.02 4.11 16 26 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 27 N -0.95 -54.47 10.46 21.65 0.23 -54.25 16 28 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 29 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 30 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 31 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.23 6.69 -2.39 -0.02 1.21 16 36 H 0.05 1.18 7.72 -2.39 -0.02 1.16 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 0.82 7.98 -2.38 -0.02 0.80 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.55 7.58 -2.39 -0.02 1.53 16 42 H 0.06 0.94 8.02 -2.39 -0.02 0.92 16 43 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 1.58 7.63 -2.39 -0.02 1.56 16 47 H 0.40 13.21 8.62 -92.71 -0.80 12.41 16 48 H 0.03 1.52 7.98 -2.38 -0.02 1.51 16 49 H 0.06 2.37 7.85 -2.39 -0.02 2.35 16 50 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.07 2.34 7.85 -2.39 -0.02 2.32 16 52 H 0.08 2.35 7.82 -2.39 -0.02 2.33 16 53 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 54 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -64.92 411.11 0.77 -64.14 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.06 Total: 37.30 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.85 Total: 2.40 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -7.11 Total: -126.45 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.33 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -64.92 0.77 -64.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097405073.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.326 kcal (2) G-P(sol) polarization free energy of solvation -64.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds