Wall clock time and date at job start Tue Mar 31 2020 19:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46656 * 2 1 4 4 H 1.08994 * 110.06886 * 306.12754 * 3 2 1 5 5 C 1.53995 * 109.91506 * 184.92591 * 3 2 1 6 6 H 1.09006 * 110.31210 * 358.43336 * 5 3 2 7 7 C 1.50698 * 110.31338 * 120.50558 * 5 3 2 8 8 O 1.21287 * 119.99632 * 0.02562 * 7 5 3 9 9 N 1.34774 * 120.00442 * 180.02562 * 7 5 3 10 10 C 1.46496 * 119.99978 * 180.02562 * 9 7 5 11 11 C 1.54321 * 111.69510 * 298.98164 * 10 9 7 12 12 C 1.55056 * 103.94138 * 262.79022 * 11 10 9 13 13 C 1.55054 * 102.10724 * 319.94448 * 12 11 10 14 14 C 1.54319 * 103.93693 * 40.05585 * 13 12 11 15 15 H 1.08998 * 111.69621 * 97.21013 * 14 13 12 16 16 C 1.53790 * 109.06154 * 222.03326 * 14 13 12 17 17 N 1.47209 * 106.37697 * 94.88197 * 16 14 13 18 18 C 1.36938 * 126.69843 * 211.31844 * 17 16 14 19 19 H 1.08003 * 119.99857 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00360 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99767 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00311 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46981 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47197 * 120.00081 * 22 20 18 25 25 H 1.48500 * 109.47390 * 240.00295 * 22 20 18 26 26 C 1.47206 * 106.59445 * 31.29178 * 17 16 14 27 27 C 1.54603 * 105.13954 * 239.42259 * 5 3 2 28 28 C 1.54933 * 102.92111 * 338.03975 * 27 5 3 29 29 N 1.47901 * 109.92272 * 67.33745 * 3 2 1 30 30 C 1.46900 * 110.99711 * 265.19485 * 29 3 2 31 31 H 1.08999 * 109.47045 * 52.84013 * 1 2 3 32 32 H 1.09001 * 109.46983 * 172.83665 * 1 2 3 33 33 H 1.08997 * 109.47733 * 292.83888 * 1 2 3 34 34 H 1.08998 * 109.47517 * 239.99787 * 2 1 3 35 35 H 1.09005 * 109.47000 * 119.99531 * 2 1 3 36 36 H 0.96994 * 119.99681 * 359.97438 * 9 7 5 37 37 H 1.09008 * 110.53095 * 21.40514 * 11 10 9 38 38 H 1.08999 * 110.53948 * 144.02893 * 11 10 9 39 39 H 1.09000 * 110.90120 * 78.13900 * 12 11 10 40 40 H 1.08993 * 110.90626 * 201.70500 * 12 11 10 41 41 H 1.09002 * 110.53252 * 158.66462 * 13 12 11 42 42 H 1.08997 * 110.53558 * 281.29911 * 13 12 11 43 43 H 1.08997 * 110.07515 * 214.12023 * 16 14 13 44 44 H 1.09006 * 110.06955 * 335.65462 * 16 14 13 45 45 H 0.97006 * 120.00316 * 180.02562 * 21 20 18 46 46 H 1.09009 * 110.07211 * 209.48222 * 26 17 16 47 47 H 1.09003 * 110.07464 * 87.94685 * 26 17 16 48 48 H 1.08999 * 110.72588 * 96.39986 * 27 5 3 49 49 H 1.09004 * 110.71961 * 219.68729 * 27 5 3 50 50 H 1.09009 * 110.66960 * 278.98366 * 28 27 5 51 51 H 1.08998 * 110.81048 * 155.91906 * 28 27 5 52 52 H 1.09001 * 109.47330 * 65.78501 * 30 29 3 53 53 H 1.09007 * 109.46839 * 185.77353 * 30 29 3 54 54 H 1.08993 * 109.47384 * 305.78020 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5954 1.9963 -0.8269 5 6 3.5747 1.4563 -0.1243 6 1 3.9609 0.4375 -0.1569 7 6 3.9928 2.2130 -1.3587 8 8 3.1526 2.7030 -2.0832 9 7 5.3003 2.3452 -1.6576 10 6 5.7067 3.0812 -2.8573 11 6 5.1528 2.4290 -4.1416 12 6 6.3300 1.5619 -4.6578 13 6 7.5512 2.4794 -4.3913 14 6 7.2468 3.1135 -3.0177 15 1 7.7489 2.5828 -2.2087 16 6 7.6193 4.6050 -3.0593 17 7 6.3828 5.3326 -3.3892 18 6 6.2851 6.5031 -4.0931 19 1 5.3164 6.9451 -4.2741 20 6 7.4310 7.1216 -4.5740 21 7 8.6114 6.5827 -4.3539 22 14 7.2976 8.7180 -5.5348 23 1 5.8700 9.1119 -5.6446 24 1 8.0521 9.7849 -4.8293 25 1 7.8647 8.5267 -6.8939 26 6 5.2720 4.5557 -2.8152 27 6 4.0762 2.1820 1.1454 28 6 2.8388 3.0037 1.5862 29 7 1.7027 2.0962 1.2831 30 6 0.4439 2.8460 1.1771 31 1 -0.3633 0.6207 -0.8190 32 1 -0.3633 -1.0197 -0.1281 33 1 -0.3634 0.3989 0.9470 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 5.9723 1.9536 -1.0780 37 1 4.2898 1.8042 -3.9115 38 1 4.8870 3.1916 -4.8737 39 1 6.4086 0.6350 -4.0896 40 1 6.2232 1.3553 -5.7227 41 1 8.4682 1.8920 -4.3464 42 1 7.6275 3.2475 -5.1608 43 1 7.9934 4.9245 -2.0867 44 1 8.3731 4.7810 -3.8268 45 1 9.4123 7.0151 -4.6896 46 1 4.3698 4.6969 -3.4105 47 1 5.0931 4.8637 -1.7850 48 1 4.3561 1.4631 1.9154 49 1 4.9120 2.8405 0.9086 50 1 2.7615 3.9237 1.0067 51 1 2.8807 3.2247 2.6528 52 1 -0.3797 2.1516 1.0109 53 1 0.2717 3.3993 2.1004 54 1 0.5055 3.5432 0.3416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098846381.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:14 Heat of formation + Delta-G solvation = -29.781735 kcal Electronic energy + Delta-G solvation = -31523.304986 eV Core-core repulsion = 27687.226008 eV Total energy + Delta-G solvation = -3836.078978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.92570 -40.60974 -38.80675 -36.26485 -34.89378 -34.09447 -33.54811 -33.18953 -31.03179 -29.62262 -28.93366 -27.10972 -26.31811 -26.11402 -23.97298 -23.13652 -22.39376 -22.10659 -21.17902 -20.37270 -20.24911 -19.10829 -18.03108 -17.20655 -16.84194 -16.78196 -16.46125 -16.06099 -15.82781 -15.50534 -15.32822 -15.09739 -14.82818 -14.65001 -14.55073 -14.22907 -14.14187 -13.95250 -13.67464 -13.33361 -13.12195 -13.11108 -12.85981 -12.79134 -12.49925 -12.41457 -12.20154 -12.14801 -12.06689 -12.05738 -11.83237 -11.75167 -11.73619 -11.65758 -11.61302 -11.59308 -11.44320 -11.40128 -10.78863 -10.60938 -10.04932 -9.48010 -8.94613 -7.79513 -5.27611 1.43552 1.43984 1.54552 1.65035 2.10908 2.45986 3.02733 3.26417 3.42077 3.47670 3.62675 3.66226 3.77578 3.86040 3.90373 4.13237 4.20587 4.33242 4.38079 4.39611 4.42044 4.42422 4.48653 4.54510 4.57272 4.59251 4.70356 4.71133 4.74940 4.76897 4.88423 4.88770 4.92526 4.96969 4.98298 5.02708 5.08781 5.10985 5.15076 5.16964 5.21400 5.26342 5.33856 5.39514 5.44948 5.49056 5.60019 5.71638 5.81848 5.85821 6.03204 6.35420 6.63275 7.07288 7.32268 7.71549 8.38322 9.18957 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.003255 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.305373 B = 8600.628504 C = 9336.409324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C 0.069 3.931 4 H 0.047 0.953 5 C -0.111 4.111 6 H 0.137 0.863 7 C 0.514 3.486 8 O -0.576 6.576 9 N -0.696 5.696 10 C 0.172 3.828 11 C -0.108 4.108 12 C -0.109 4.109 13 C -0.105 4.105 14 C -0.102 4.102 15 H 0.108 0.892 16 C 0.141 3.859 17 N -0.612 5.612 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.057 4.057 21 N -0.939 5.939 22 Si 0.979 3.021 23 H -0.275 1.275 24 H -0.288 1.288 25 H -0.285 1.285 26 C 0.147 3.853 27 C -0.106 4.106 28 C 0.027 3.973 29 N -0.507 5.507 30 C 0.009 3.991 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.039 0.961 43 H -0.019 1.019 44 H 0.104 0.896 45 H 0.250 0.750 46 H 0.022 0.978 47 H -0.004 1.004 48 H 0.115 0.885 49 H 0.073 0.927 50 H 0.017 0.983 51 H 0.102 0.898 52 H 0.085 0.915 53 H 0.078 0.922 54 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 -17.861 11.830 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.040 4.040 4 H 0.065 0.935 5 C -0.133 4.133 6 H 0.155 0.845 7 C 0.302 3.698 8 O -0.455 6.455 9 N -0.348 5.348 10 C 0.084 3.916 11 C -0.147 4.147 12 C -0.146 4.146 13 C -0.143 4.143 14 C -0.122 4.122 15 H 0.126 0.874 16 C 0.016 3.984 17 N -0.337 5.337 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.250 4.250 21 N -0.589 5.589 22 Si 0.807 3.193 23 H -0.200 1.200 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.020 3.980 27 C -0.144 4.144 28 C -0.101 4.101 29 N -0.231 5.231 30 C -0.139 4.139 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.058 0.942 43 H -0.001 1.001 44 H 0.121 0.879 45 H 0.061 0.939 46 H 0.041 0.959 47 H 0.013 0.987 48 H 0.134 0.866 49 H 0.092 0.908 50 H 0.035 0.965 51 H 0.120 0.880 52 H 0.104 0.896 53 H 0.097 0.903 54 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -8.989 -17.709 11.614 23.007 hybrid contribution 0.156 2.259 -1.075 2.506 sum -8.833 -15.450 10.539 20.684 Atomic orbital electron populations 1.21833 0.95682 1.01802 1.01444 1.21470 0.96396 0.93445 1.02490 1.22487 0.92802 0.97445 0.91273 0.93465 1.22254 0.97025 1.01847 0.92129 0.84513 1.21080 0.82131 0.79603 0.87025 1.90681 1.51993 1.49968 1.52861 1.45824 1.07470 1.55323 1.26167 1.21400 0.94695 0.90071 0.85393 1.22528 0.98470 0.98481 0.95172 1.22551 0.93088 0.97752 1.01228 1.22357 0.98831 0.97891 0.95197 1.22942 0.92493 0.97505 0.99229 0.87435 1.21893 0.90756 0.87555 0.98208 1.44677 1.02474 1.24192 1.62312 1.19371 0.93333 0.97992 1.26235 0.91316 1.25521 0.94806 1.02443 1.02220 1.69828 0.97300 1.40439 1.51297 0.85011 0.77414 0.78957 0.77929 1.19972 1.21490 1.21193 1.21490 0.90774 0.91360 0.94400 1.22539 0.96915 0.99317 0.95678 1.23320 0.90922 0.93899 1.01911 1.64818 1.02401 1.26914 1.28952 1.22710 0.93065 0.97578 1.00566 0.94403 0.91680 0.91811 0.91625 0.89873 0.74783 0.91660 0.94062 0.89131 0.91117 0.89488 0.94174 1.00135 0.87883 0.93939 0.95936 0.98653 0.86630 0.90849 0.96467 0.87999 0.89636 0.90322 0.97451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.79 71.98 0.63 -1.82 16 2 C -0.10 -1.70 5.38 30.59 0.16 -1.54 16 3 C 0.07 1.51 2.21 45.06 0.10 1.61 16 4 H 0.05 1.42 5.91 -2.39 -0.01 1.40 16 5 C -0.11 -2.20 3.02 -10.66 -0.03 -2.23 16 6 H 0.14 1.88 7.69 -2.38 -0.02 1.86 16 7 C 0.51 14.76 6.37 87.66 0.56 15.32 16 8 O -0.58 -22.05 13.22 -3.05 -0.04 -22.09 16 9 N -0.70 -19.00 5.00 -416.83 -2.09 -21.08 16 10 C 0.17 6.18 0.92 4.96 0.00 6.19 16 11 C -0.11 -3.81 5.51 31.75 0.17 -3.64 16 12 C -0.11 -3.06 6.92 32.00 0.22 -2.84 16 13 C -0.11 -3.44 6.23 31.74 0.20 -3.25 16 14 C -0.10 -3.60 3.68 -9.44 -0.03 -3.63 16 15 H 0.11 3.01 7.71 -2.39 -0.02 2.99 16 16 C 0.14 6.87 5.56 86.51 0.48 7.35 16 17 N -0.61 -33.06 3.39 -695.33 -2.36 -35.42 16 18 C -0.24 -14.14 10.34 84.03 0.87 -13.27 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 21 N -0.94 -55.08 10.08 21.65 0.22 -54.87 16 22 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 23 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 C 0.15 6.96 5.31 86.51 0.46 7.42 16 27 C -0.11 -1.83 6.59 31.80 0.21 -1.62 16 28 C 0.03 0.57 6.56 86.65 0.57 1.13 16 29 N -0.51 -10.46 5.07 -884.08 -4.48 -14.94 16 30 C 0.01 0.19 9.09 127.69 1.16 1.35 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.01 6.21 -2.39 -0.01 1.00 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.19 16 36 H 0.41 8.23 8.29 -92.71 -0.77 7.46 16 37 H 0.06 2.27 6.64 -2.38 -0.02 2.26 16 38 H 0.04 1.73 7.55 -2.39 -0.02 1.72 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.65 7.56 -2.39 -0.02 1.63 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H 0.10 5.63 4.88 -2.38 -0.01 5.62 16 45 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 46 H 0.02 1.16 7.55 -2.38 -0.02 1.14 16 47 H 0.00 -0.21 8.08 -2.39 -0.02 -0.23 16 48 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.07 1.37 7.68 -2.38 -0.02 1.35 16 50 H 0.02 0.45 8.02 -2.38 -0.02 0.44 16 51 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.09 1.53 5.39 -2.39 -0.01 1.52 16 53 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 54 H 0.01 0.17 7.93 -2.39 -0.02 0.15 16 Total: -1.00 -72.12 398.42 -0.41 -72.52 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.11 Total: 23.59 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 6.20 Total: 3.74 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -8.70 Total: -126.31 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.04 Total: -22.09 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -72.12 -0.41 -72.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098846381.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.742 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds