Wall clock time and date at job start Tue Mar 31 2020 19:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.45891 * 2 1 4 4 C 1.53043 * 109.45992 * 119.96302 * 2 1 3 5 5 C 1.53123 * 109.27487 * 179.19875 * 4 2 1 6 6 H 1.08994 * 109.52218 * 62.31221 * 5 4 2 7 7 C 1.50690 * 109.52103 * 182.44400 * 5 4 2 8 8 O 1.21284 * 120.00384 * 359.97438 * 7 5 4 9 9 N 1.34782 * 120.00045 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00040 * 179.97438 * 9 7 5 11 11 C 1.54177 * 111.61830 * 299.02583 * 10 9 7 12 12 C 1.54086 * 104.66721 * 260.48314 * 11 10 9 13 13 C 1.54852 * 103.10100 * 322.88631 * 12 11 10 14 14 C 1.54190 * 104.29784 * 37.53112 * 13 12 11 15 15 H 1.09002 * 112.24789 * 98.78515 * 14 13 12 16 16 C 1.53788 * 109.12936 * 223.08337 * 14 13 12 17 17 N 1.47225 * 106.36020 * 132.67625 * 16 14 13 18 18 C 1.36927 * 126.70338 * 148.76290 * 17 16 14 19 19 H 1.07997 * 120.00221 * 180.02562 * 18 17 16 20 20 C 1.38820 * 119.99978 * 0.02562 * 18 17 16 21 21 N 1.31612 * 120.00066 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47058 * 60.00045 * 22 20 18 24 24 H 1.48499 * 109.46749 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47235 * 300.00098 * 22 20 18 26 26 C 1.47224 * 106.59233 * 328.76019 * 17 16 14 27 27 C 1.53122 * 109.15961 * 302.34802 * 5 4 2 28 28 C 1.53036 * 109.28039 * 57.65379 * 27 5 4 29 29 N 1.46844 * 109.46334 * 240.01902 * 2 1 3 30 30 C 1.46901 * 110.99853 * 54.14542 * 29 2 1 31 31 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47128 * 299.97707 * 1 2 3 33 33 H 1.08996 * 109.47530 * 59.98059 * 1 2 3 34 34 H 1.09001 * 109.50250 * 299.13702 * 4 2 1 35 35 H 1.08996 * 109.50226 * 59.21921 * 4 2 1 36 36 H 0.96998 * 119.99869 * 0.02562 * 9 7 5 37 37 H 1.08997 * 110.46842 * 20.29945 * 11 10 9 38 38 H 1.09003 * 110.47174 * 142.89146 * 11 10 9 39 39 H 1.09006 * 111.10275 * 204.21062 * 12 11 10 40 40 H 1.09000 * 110.06634 * 81.08349 * 12 11 10 41 41 H 1.08998 * 110.47013 * 278.83134 * 13 12 11 42 42 H 1.08993 * 110.46552 * 156.23460 * 13 12 11 43 43 H 1.09000 * 110.07872 * 251.90054 * 16 14 13 44 44 H 1.09004 * 110.07972 * 13.45181 * 16 14 13 45 45 H 0.97005 * 120.00045 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.08223 * 272.01594 * 26 17 16 47 47 H 1.09004 * 110.07420 * 150.45965 * 26 17 16 48 48 H 1.08995 * 109.50536 * 177.59871 * 27 5 4 49 49 H 1.08997 * 109.50303 * 297.67397 * 27 5 4 50 50 H 1.09005 * 109.46443 * 180.80381 * 28 27 5 51 51 H 1.09006 * 109.46092 * 60.83372 * 28 27 5 52 52 H 1.09002 * 109.47401 * 59.99789 * 30 29 2 53 53 H 1.09001 * 109.46874 * 299.99802 * 30 29 2 54 54 H 1.09004 * 109.46970 * 179.97438 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5710 -0.7358 1.2358 6 1 3.9456 0.2873 1.2684 7 6 4.0783 -1.4963 2.4337 8 8 3.2936 -1.9790 3.2225 9 7 5.4041 -1.6402 2.6286 10 6 5.8973 -2.3792 3.7934 11 6 5.4511 -1.7210 5.1143 12 6 6.6759 -0.9098 5.5792 13 6 7.8680 -1.8128 5.1776 14 6 7.4433 -2.4263 3.8283 15 1 7.8817 -1.9010 2.9798 16 6 7.8051 -3.9210 3.8181 17 7 6.6133 -4.6329 3.3279 18 6 6.5942 -5.7965 2.6064 19 1 5.6521 -6.2267 2.3003 20 6 7.7858 -6.4231 2.2682 21 7 8.9340 -5.8991 2.6415 22 14 7.7596 -8.0110 1.2845 23 1 7.0961 -7.7727 -0.0225 24 1 9.1518 -8.4748 1.0562 25 1 7.0102 -9.0480 2.0382 26 6 5.4461 -3.8492 3.7650 27 6 4.0548 -1.4186 -0.0464 28 6 3.4865 -0.6778 -1.2589 29 7 2.0193 -0.6919 -1.1993 30 6 1.4373 -0.1108 -2.4165 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5135 0.8902 33 1 -0.3634 0.5141 -0.8898 34 1 1.6894 -0.1978 2.1400 35 1 1.6653 -1.7443 1.2583 36 1 6.0318 -1.2539 1.9979 37 1 4.5901 -1.0742 4.9460 38 1 5.2177 -2.4815 5.8594 39 1 6.6563 -0.7528 6.6577 40 1 6.7168 0.0422 5.0500 41 1 8.0208 -2.5953 5.9208 42 1 8.7733 -1.2178 5.0576 43 1 8.6478 -4.0975 3.1497 44 1 8.0510 -4.2534 4.8267 45 1 9.7666 -6.3372 2.4055 46 1 5.1353 -4.1646 4.7610 47 1 4.6253 -3.9751 3.0589 48 1 5.1439 -1.3946 -0.0829 49 1 3.7132 -2.4536 -0.0587 50 1 3.8175 -1.1701 -2.1734 51 1 3.8403 0.3533 -1.2531 52 1 1.7119 0.9419 -2.4838 53 1 0.3517 -0.2015 -2.3792 54 1 1.8168 -0.6415 -3.2897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098996534.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:56 Heat of formation + Delta-G solvation = -34.331755 kcal Electronic energy + Delta-G solvation = -31325.902175 eV Core-core repulsion = 27489.625893 eV Total energy + Delta-G solvation = -3836.276282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.80686 -40.46692 -39.06657 -36.35073 -35.01337 -34.36377 -33.41074 -33.27673 -31.00567 -29.59158 -28.49762 -27.39962 -26.35800 -26.22932 -24.37284 -23.26235 -22.47626 -21.79995 -20.80976 -20.37169 -20.23148 -19.00484 -17.87255 -17.17611 -16.87411 -16.70536 -16.51691 -16.15338 -15.78906 -15.62891 -15.36517 -15.25929 -15.07914 -14.85413 -14.44775 -14.02690 -13.90130 -13.62837 -13.41977 -13.18811 -13.11951 -13.00453 -12.91898 -12.79635 -12.77045 -12.63073 -12.39057 -12.30585 -12.15204 -12.02193 -11.86409 -11.84087 -11.79329 -11.65111 -11.55245 -11.41783 -11.35543 -11.23329 -10.79517 -10.51270 -9.95669 -9.21026 -8.92479 -7.76575 -5.24993 1.44199 1.46983 1.53689 1.71553 2.25735 2.47169 2.96359 3.28681 3.44120 3.57398 3.62714 3.73242 3.82499 3.88415 4.01635 4.06043 4.17557 4.31013 4.36785 4.40163 4.45490 4.46980 4.49831 4.56933 4.60501 4.62099 4.69389 4.74006 4.81242 4.84026 4.84430 4.90303 4.90944 4.96470 4.97332 5.04796 5.08234 5.11608 5.13955 5.18907 5.22843 5.28099 5.29983 5.40901 5.43468 5.49933 5.59725 5.75673 5.81750 6.18250 6.21008 6.35138 6.67346 7.09491 7.36696 7.73892 8.41972 9.21000 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.003809 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.734333 B = 7349.070443 C = 9162.536861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.053 0.947 4 C -0.085 4.085 5 C -0.097 4.097 6 H 0.120 0.880 7 C 0.514 3.486 8 O -0.575 6.575 9 N -0.699 5.699 10 C 0.172 3.828 11 C -0.113 4.113 12 C -0.108 4.108 13 C -0.108 4.108 14 C -0.103 4.103 15 H 0.089 0.911 16 C 0.144 3.856 17 N -0.616 5.616 18 C -0.240 4.240 19 H 0.067 0.933 20 C -0.057 4.057 21 N -0.941 5.941 22 Si 0.978 3.022 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.284 1.284 26 C 0.139 3.861 27 C -0.105 4.105 28 C 0.064 3.936 29 N -0.561 5.561 30 C 0.023 3.977 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.408 0.592 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.094 0.906 44 H -0.012 1.012 45 H 0.250 0.750 46 H 0.008 0.992 47 H 0.023 0.977 48 H 0.082 0.918 49 H 0.045 0.955 50 H 0.083 0.917 51 H 0.052 0.948 52 H 0.033 0.967 53 H 0.077 0.923 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 19.820 -5.776 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.071 0.929 4 C -0.124 4.124 5 C -0.118 4.118 6 H 0.138 0.862 7 C 0.302 3.698 8 O -0.455 6.455 9 N -0.350 5.350 10 C 0.084 3.916 11 C -0.152 4.152 12 C -0.145 4.145 13 C -0.146 4.146 14 C -0.123 4.123 15 H 0.108 0.892 16 C 0.018 3.982 17 N -0.340 5.340 18 C -0.369 4.369 19 H 0.085 0.915 20 C -0.250 4.250 21 N -0.591 5.591 22 Si 0.806 3.194 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.210 1.210 26 C 0.012 3.988 27 C -0.143 4.143 28 C -0.063 4.063 29 N -0.287 5.287 30 C -0.124 4.124 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.006 0.994 45 H 0.060 0.940 46 H 0.025 0.975 47 H 0.042 0.958 48 H 0.100 0.900 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.070 0.930 52 H 0.052 0.948 53 H 0.096 0.904 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.878 18.798 -5.290 21.885 hybrid contribution 0.527 -0.764 -0.526 1.067 sum -9.350 18.035 -5.816 21.131 Atomic orbital electron populations 1.21891 0.93357 1.02240 1.02753 1.21614 0.96195 0.95225 0.89135 0.92903 1.21375 0.92500 1.01015 0.97484 1.21383 0.97746 1.00694 0.91966 0.86229 1.21112 0.81962 0.79768 0.87003 1.90665 1.56470 1.50266 1.48083 1.45932 1.07058 1.55159 1.26820 1.21466 0.93871 0.90044 0.86241 1.22414 0.98898 0.99310 0.94530 1.22349 0.92503 0.98074 1.01609 1.22399 0.99045 0.98672 0.94508 1.22886 0.92398 0.97572 0.99415 0.89249 1.21913 0.92194 0.87591 0.96456 1.44815 1.02014 1.25028 1.62172 1.19298 0.92954 0.98755 1.25915 0.91486 1.25506 0.94746 1.02365 1.02345 1.69835 0.96867 1.40773 1.51619 0.85174 0.76524 0.79185 0.78566 1.20393 1.21137 1.20996 1.21686 0.90049 0.91277 0.95759 1.21539 1.00796 0.99165 0.92804 1.22029 0.86982 0.99386 0.97950 1.61901 1.07561 1.56160 1.03035 1.22440 1.00965 0.97527 0.91487 0.93040 0.91306 0.90963 0.90992 0.93347 0.75546 0.91314 0.92730 0.89904 0.90023 0.92585 0.89380 0.88830 0.99417 0.93995 0.97464 0.95803 0.89954 0.93581 0.89886 0.92981 0.94800 0.90439 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.76 71.98 0.63 -1.68 16 2 C 0.09 1.58 2.44 44.94 0.11 1.69 16 3 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.09 -2.02 3.96 30.65 0.12 -1.90 16 5 C -0.10 -2.23 2.59 -11.46 -0.03 -2.26 16 6 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 7 C 0.51 16.17 6.14 87.65 0.54 16.71 16 8 O -0.58 -22.70 13.55 -3.04 -0.04 -22.74 16 9 N -0.70 -21.51 5.13 -417.29 -2.14 -23.65 16 10 C 0.17 6.25 0.93 4.86 0.00 6.25 16 11 C -0.11 -3.61 5.60 31.36 0.18 -3.44 16 12 C -0.11 -2.67 6.86 31.59 0.22 -2.45 16 13 C -0.11 -3.14 6.38 31.63 0.20 -2.94 16 14 C -0.10 -3.70 3.67 -9.54 -0.03 -3.74 16 15 H 0.09 2.95 7.69 -2.39 -0.02 2.93 16 16 C 0.14 7.07 5.77 86.51 0.50 7.57 16 17 N -0.62 -33.42 3.39 -695.23 -2.36 -35.78 16 18 C -0.24 -14.16 10.34 84.04 0.87 -13.29 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 20 C -0.06 -3.26 5.49 84.87 0.47 -2.80 16 21 N -0.94 -55.52 10.08 21.65 0.22 -55.30 16 22 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 C 0.14 6.64 6.04 86.51 0.52 7.16 16 27 C -0.10 -2.39 5.26 30.65 0.16 -2.23 16 28 C 0.06 1.17 5.46 86.33 0.47 1.64 16 29 N -0.56 -10.81 4.75 -897.13 -4.26 -15.07 16 30 C 0.02 0.33 9.05 127.69 1.16 1.49 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.91 6.33 -2.39 -0.02 0.90 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.46 8.04 -2.39 -0.02 1.44 16 36 H 0.41 10.37 7.77 -92.71 -0.72 9.65 16 37 H 0.07 2.22 6.66 -2.39 -0.02 2.21 16 38 H 0.05 1.91 7.23 -2.39 -0.02 1.90 16 39 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.80 7.17 -2.39 -0.02 1.79 16 42 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.09 5.18 5.45 -2.39 -0.01 5.17 16 44 H -0.01 -0.63 7.12 -2.38 -0.02 -0.65 16 45 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 46 H 0.01 0.38 7.18 -2.39 -0.02 0.37 16 47 H 0.02 1.22 6.84 -2.38 -0.02 1.20 16 48 H 0.08 1.72 7.66 -2.39 -0.02 1.70 16 49 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.44 8.09 -2.38 -0.02 1.42 16 51 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 52 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 53 H 0.08 1.01 6.21 -2.39 -0.01 1.00 16 54 H 0.07 0.95 8.09 -2.38 -0.02 0.93 16 Total: -1.00 -71.46 395.77 -0.32 -71.78 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.16 Total: 26.43 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 6.08 Total: 5.80 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -8.54 Total: -129.81 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.04 Total: -22.74 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -71.46 -0.32 -71.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098996534.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.447 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds