Wall clock time and date at job start Tue Mar 31 2020 18:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47520 * 2 1 4 4 C 1.53007 * 109.46668 * 119.99948 * 2 1 3 5 5 H 1.08996 * 109.47136 * 56.96504 * 4 2 1 6 6 C 1.50698 * 109.47065 * 296.95546 * 4 2 1 7 7 O 1.21274 * 120.00655 * 256.79757 * 6 4 2 8 8 N 1.34785 * 119.99640 * 77.07777 * 6 4 2 9 9 C 1.46500 * 119.99889 * 183.10439 * 8 6 4 10 10 H 1.08989 * 110.56001 * 38.79155 * 9 8 6 11 11 C 1.54853 * 110.62397 * 161.86647 * 9 8 6 12 12 C 1.55859 * 103.43846 * 117.38908 * 11 9 8 13 13 H 1.08999 * 115.87211 * 159.74378 * 12 11 9 14 14 C 1.55844 * 105.75425 * 289.16612 * 12 11 9 15 15 C 1.54845 * 103.44862 * 71.58209 * 14 12 11 16 16 C 1.55846 * 110.62428 * 275.88690 * 9 8 6 17 17 H 1.08996 * 115.55901 * 82.69950 * 16 9 8 18 18 N 1.50235 * 101.04796 * 208.57487 * 16 9 8 19 19 C 1.36939 * 130.83669 * 233.94333 * 18 16 9 20 20 H 1.08003 * 120.00027 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00073 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99733 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00223 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46738 * 60.00126 * 23 21 19 25 25 H 1.48501 * 109.47130 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47168 * 300.00104 * 23 21 19 27 27 N 1.46906 * 109.46548 * 176.96224 * 4 2 1 28 28 C 1.48534 * 110.99410 * 179.86003 * 27 4 2 29 29 C 1.54937 * 103.22717 * 159.72068 * 28 27 4 30 30 C 1.54601 * 102.91979 * 322.58717 * 29 28 27 31 31 C 1.47904 * 111.00028 * 297.25375 * 27 4 2 32 32 H 1.09004 * 109.46839 * 56.67468 * 1 2 3 33 33 H 1.08997 * 109.46991 * 176.67392 * 1 2 3 34 34 H 1.09000 * 109.47318 * 296.68098 * 1 2 3 35 35 H 1.09001 * 109.47097 * 239.99578 * 2 1 3 36 36 H 1.08993 * 109.47005 * 183.34546 * 3 2 1 37 37 H 1.09002 * 109.46737 * 303.34842 * 3 2 1 38 38 H 1.09002 * 109.47040 * 63.34947 * 3 2 1 39 39 H 0.97004 * 119.99590 * 3.09964 * 8 6 4 40 40 H 1.09001 * 110.62612 * 236.97497 * 11 9 8 41 41 H 1.08997 * 110.62534 * 359.97438 * 11 9 8 42 42 H 1.09001 * 110.62545 * 313.08990 * 14 12 11 43 43 H 1.09004 * 110.76128 * 190.14085 * 14 12 11 44 44 H 1.09004 * 110.62991 * 241.51001 * 15 14 12 45 45 H 1.09001 * 110.76370 * 118.55584 * 15 14 12 46 46 H 0.97007 * 119.99630 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.67262 * 278.15568 * 28 27 4 48 48 H 1.09000 * 110.66819 * 41.28619 * 28 27 4 49 49 H 1.08996 * 110.73135 * 204.23300 * 29 28 27 50 50 H 1.08999 * 110.72729 * 80.94315 * 29 28 27 51 51 H 1.08999 * 110.30991 * 263.04250 * 30 29 28 52 52 H 1.09003 * 110.39206 * 140.91532 * 30 29 28 53 53 H 1.08995 * 109.91852 * 333.51657 * 31 27 4 54 54 H 1.09003 * 109.91385 * 94.61129 * 31 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6328 -1.7320 1.2769 6 6 1.6001 0.0314 2.4786 7 8 2.3919 0.7252 3.0805 8 7 0.3280 -0.0711 2.9123 9 6 -0.1176 0.7131 4.0667 10 1 0.3216 1.7103 4.0447 11 6 -1.6635 0.7949 4.1065 12 6 -2.0299 0.0789 5.4415 13 1 -3.0144 0.3078 5.8494 14 6 -1.7347 -1.4330 5.2057 15 6 -0.1879 -1.4975 5.1751 16 6 0.2410 -0.0157 5.3968 17 1 1.2607 0.1305 5.7529 18 7 -0.8477 0.4858 6.3024 19 6 -0.7837 1.1007 7.5244 20 1 0.1753 1.2938 7.9821 21 6 -1.9513 1.4757 8.1746 22 7 -3.1200 1.2399 7.6170 23 14 -1.8639 2.3151 9.8412 24 1 -1.0992 3.5821 9.7177 25 1 -3.2385 2.6117 10.3187 26 1 -1.1847 1.4195 10.8115 27 7 3.5071 -0.7852 1.2132 28 6 4.0395 -1.4774 2.4147 29 6 5.4593 -1.9128 1.9731 30 6 5.2545 -2.3092 0.4929 31 6 3.9749 -1.5742 0.0529 32 1 -0.3633 0.5646 -0.8587 33 1 -0.3633 -1.0259 -0.0596 34 1 -0.3634 0.4614 0.9182 35 1 1.8933 -0.5139 -0.8900 36 1 3.1284 1.4430 -0.0600 37 1 1.6286 1.9733 -0.8585 38 1 1.7267 1.9387 0.9185 39 1 -0.2923 -0.6640 2.4599 40 1 -1.9932 1.8338 4.1055 41 1 -2.0984 0.2524 3.2671 42 1 -2.1516 -1.7617 4.2537 43 1 -2.1281 -2.0358 6.0243 44 1 0.1624 -1.8581 4.2080 45 1 0.1885 -2.1304 5.9788 46 1 -3.9359 1.5024 8.0713 47 1 4.0929 -0.7927 3.2612 48 1 3.4293 -2.3467 2.6598 49 1 5.8000 -2.7674 2.5576 50 1 6.1608 -1.0827 2.0566 51 1 5.1206 -3.3874 0.4050 52 1 6.1035 -1.9838 -0.1084 53 1 3.2122 -2.2971 -0.2363 54 1 4.1934 -0.9104 -0.7836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110161861.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:03 Heat of formation + Delta-G solvation = 0.742091 kcal Electronic energy + Delta-G solvation = -31735.960508 eV Core-core repulsion = 27901.205143 eV Total energy + Delta-G solvation = -3834.755366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.81706 -40.54146 -38.86603 -36.55720 -35.33363 -34.13678 -32.14194 -31.03963 -30.77704 -29.79391 -29.33559 -27.91125 -27.09881 -25.95669 -23.28744 -22.55139 -22.32729 -21.70937 -21.19581 -20.37331 -19.95791 -18.90246 -18.03011 -17.47302 -16.94013 -16.78539 -16.59983 -16.13474 -16.03161 -15.71958 -15.19091 -14.66052 -14.53984 -14.41960 -14.10171 -13.97202 -13.86117 -13.50615 -13.44160 -13.25196 -13.08126 -12.98260 -12.86748 -12.80682 -12.74975 -12.61267 -12.37384 -12.28040 -12.02421 -11.96142 -11.89573 -11.81578 -11.75689 -11.64090 -11.54900 -11.41319 -11.15836 -11.04470 -10.81297 -10.50002 -9.90250 -9.30709 -8.85749 -7.81412 -5.18630 1.44734 1.47166 1.53149 1.75663 2.14086 2.49520 3.00869 3.33052 3.46185 3.64050 3.75842 3.86074 3.94522 3.97831 4.03721 4.10673 4.14037 4.16666 4.30706 4.34818 4.39804 4.43812 4.46775 4.59805 4.60758 4.69237 4.75130 4.77156 4.78105 4.82796 4.95783 4.97033 5.00594 5.04042 5.05254 5.06546 5.11806 5.12760 5.18136 5.22227 5.26475 5.31167 5.34000 5.43470 5.45827 5.48686 5.54975 5.75136 5.87824 5.92914 6.04311 6.23236 6.72349 7.02035 7.42920 7.67238 8.55160 9.27134 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.003204 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.345692 B = 8737.075465 C = 9325.748869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 C -0.135 4.135 4 C 0.069 3.931 5 H 0.081 0.919 6 C 0.517 3.483 7 O -0.565 6.565 8 N -0.700 5.700 9 C 0.152 3.848 10 H 0.046 0.954 11 C -0.121 4.121 12 C 0.140 3.860 13 H 0.117 0.883 14 C -0.123 4.123 15 C -0.115 4.115 16 C 0.121 3.879 17 H 0.058 0.942 18 N -0.621 5.621 19 C -0.226 4.226 20 H 0.068 0.932 21 C -0.061 4.061 22 N -0.943 5.943 23 Si 0.974 3.026 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.282 1.282 27 N -0.510 5.510 28 C 0.032 3.968 29 C -0.120 4.120 30 C -0.124 4.124 31 C 0.035 3.965 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.410 0.590 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.037 0.963 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.249 0.751 47 H 0.057 0.943 48 H 0.042 0.958 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.081 0.919 52 H 0.081 0.919 53 H 0.060 0.940 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.165 -10.438 -21.645 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.093 4.093 3 C -0.193 4.193 4 C -0.043 4.043 5 H 0.098 0.902 6 C 0.304 3.696 7 O -0.443 6.443 8 N -0.354 5.354 9 C 0.045 3.955 10 H 0.064 0.936 11 C -0.160 4.160 12 C 0.035 3.965 13 H 0.134 0.866 14 C -0.162 4.162 15 C -0.155 4.155 16 C 0.013 3.987 17 H 0.076 0.924 18 N -0.344 5.344 19 C -0.355 4.355 20 H 0.086 0.914 21 C -0.254 4.254 22 N -0.593 5.593 23 Si 0.803 3.197 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.209 1.209 27 N -0.235 5.235 28 C -0.096 4.096 29 C -0.158 4.158 30 C -0.162 4.162 31 C -0.092 4.092 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.249 0.751 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.100 0.900 50 H 0.083 0.917 51 H 0.099 0.901 52 H 0.100 0.900 53 H 0.078 0.922 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.776 -9.242 -20.982 24.925 hybrid contribution -0.524 -0.084 1.576 1.663 sum 9.251 -9.326 -19.406 23.434 Atomic orbital electron populations 1.22142 0.93585 1.03524 1.03015 1.21081 0.96505 0.96153 0.95515 1.21688 1.01454 0.95772 1.00357 1.21962 0.90078 0.98846 0.93429 0.90150 1.20869 0.81674 0.81676 0.85413 1.90686 1.53295 1.41622 1.58700 1.46209 1.12033 1.45805 1.31388 1.21978 0.95022 0.93416 0.85107 0.93602 1.23042 0.92911 1.00617 0.99468 1.23881 0.93957 0.91368 0.87342 0.86590 1.22888 0.95186 0.97506 1.00628 1.22790 0.96338 0.95804 1.00519 1.23228 0.91408 0.94160 0.89923 0.92407 1.47074 1.02306 1.67383 1.17632 1.19228 0.92810 1.29763 0.93659 0.91413 1.25380 0.94870 1.03037 1.02127 1.69697 0.96730 1.53524 1.39313 0.85216 0.76293 0.78318 0.79883 1.21066 1.21472 1.20857 1.64544 1.06848 1.49011 1.03063 1.23216 0.96374 0.96090 0.93875 1.22440 0.95327 1.01164 0.96853 1.22392 0.97747 1.00610 0.95479 1.22979 0.96912 0.95783 0.93533 0.90889 0.90201 0.92931 0.87975 0.92582 0.91653 0.95874 0.75097 0.93393 0.88580 0.89164 0.94436 0.89803 0.94244 0.94125 0.92398 0.93940 0.90021 0.91716 0.90072 0.90046 0.92220 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.46 71.98 0.61 -1.71 16 2 C -0.07 -1.23 2.59 -10.79 -0.03 -1.26 16 3 C -0.14 -2.96 8.80 71.98 0.63 -2.33 16 4 C 0.07 1.43 1.37 44.17 0.06 1.49 16 5 H 0.08 1.33 7.99 -2.39 -0.02 1.31 16 6 C 0.52 15.13 4.77 87.65 0.42 15.55 16 7 O -0.57 -22.27 14.52 -3.01 -0.04 -22.32 16 8 N -0.70 -19.15 2.21 -434.92 -0.96 -20.11 16 9 C 0.15 5.66 3.03 46.61 0.14 5.80 16 10 H 0.05 2.03 7.80 -2.39 -0.02 2.01 16 11 C -0.12 -4.43 6.23 32.22 0.20 -4.23 16 12 C 0.14 6.25 4.73 45.91 0.22 6.47 16 13 H 0.12 6.07 5.64 -2.39 -0.01 6.06 16 14 C -0.12 -4.46 6.47 32.21 0.21 -4.26 16 15 C -0.12 -4.10 6.33 32.21 0.20 -3.89 16 16 C 0.12 5.22 5.29 46.23 0.24 5.47 16 17 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 18 N -0.62 -32.12 3.05 -611.36 -1.86 -33.99 16 19 C -0.23 -13.07 10.59 84.03 0.89 -12.18 16 20 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 21 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 22 N -0.94 -55.26 10.56 21.65 0.23 -55.03 16 23 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 24 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 27 N -0.51 -11.20 4.25 -862.22 -3.66 -14.87 16 28 C 0.03 0.76 5.65 86.65 0.49 1.25 16 29 C -0.12 -2.13 7.06 31.80 0.22 -1.91 16 30 C -0.12 -1.62 6.93 31.47 0.22 -1.40 16 31 C 0.04 0.52 5.42 86.45 0.47 0.98 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.95 5.50 -2.39 -0.01 0.94 16 35 H 0.10 1.27 7.12 -2.39 -0.02 1.26 16 36 H 0.06 1.33 7.79 -2.39 -0.02 1.31 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.02 0.65 6.84 -2.39 -0.02 0.63 16 39 H 0.41 8.43 6.69 -92.71 -0.62 7.81 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 2.64 7.34 -2.39 -0.02 2.63 16 42 H 0.09 2.48 7.84 -2.39 -0.02 2.46 16 43 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.08 2.39 6.51 -2.39 -0.02 2.38 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 47 H 0.06 1.83 6.84 -2.39 -0.02 1.81 16 48 H 0.04 0.95 8.00 -2.39 -0.02 0.93 16 49 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.06 0.69 7.63 -2.39 -0.02 0.68 16 54 H 0.09 1.16 8.12 -2.39 -0.02 1.14 16 Total: -1.00 -71.39 398.03 1.64 -69.75 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.25 Total: 26.87 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.67 Total: 0.80 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.26 Total: -123.99 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.32 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -71.39 1.64 -69.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110161861.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.489 kcal (2) G-P(sol) polarization free energy of solvation -71.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds