Wall clock time and date at job start Tue Mar 31 2020 18:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47413 * 2 1 4 4 C 1.53007 * 109.46944 * 120.00278 * 2 1 3 5 5 H 1.09003 * 109.46697 * 304.38225 * 4 2 1 6 6 C 1.50706 * 109.47072 * 64.38022 * 4 2 1 7 7 O 1.21274 * 119.99870 * 90.51685 * 6 4 2 8 8 N 1.34772 * 119.99879 * 270.51295 * 6 4 2 9 9 C 1.46495 * 119.99918 * 175.49401 * 8 6 4 10 10 H 1.09002 * 115.51764 * 350.58398 * 9 8 6 11 11 C 1.53003 * 117.44481 * 205.16691 * 9 8 6 12 12 H 1.09003 * 119.53722 * 5.75693 * 11 9 8 13 13 C 1.54386 * 118.12603 * 160.85083 * 11 9 8 14 14 N 1.48148 * 104.61838 * 87.18935 * 13 11 9 15 15 C 1.36938 * 127.83668 * 140.41417 * 14 13 11 16 16 H 1.07992 * 120.00081 * 348.51007 * 15 14 13 17 17 C 1.38815 * 119.99632 * 168.51043 * 15 14 13 18 18 N 1.31616 * 120.00424 * 343.67402 * 17 15 14 19 19 Si 1.86800 * 119.99720 * 163.67325 * 17 15 14 20 20 H 1.48496 * 109.47460 * 94.98948 * 19 17 15 21 21 H 1.48507 * 109.46917 * 214.99142 * 19 17 15 22 22 H 1.48498 * 109.47018 * 334.98813 * 19 17 15 23 23 C 1.48154 * 104.32451 * 320.41654 * 14 13 11 24 24 C 1.53005 * 117.40845 * 135.93663 * 9 8 6 25 25 H 1.08996 * 119.54060 * 355.90335 * 24 9 8 26 26 N 1.46898 * 109.46783 * 184.38158 * 4 2 1 27 27 C 1.46847 * 110.99957 * 307.02735 * 26 4 2 28 28 C 1.53041 * 109.52197 * 174.16470 * 27 26 4 29 29 C 1.53120 * 109.27827 * 59.17676 * 28 27 26 30 30 C 1.53115 * 109.16218 * 302.34632 * 29 28 27 31 31 C 1.46853 * 110.99565 * 182.82178 * 26 4 2 32 32 H 1.08996 * 109.46950 * 298.68839 * 1 2 3 33 33 H 1.08996 * 109.46986 * 58.68509 * 1 2 3 34 34 H 1.08995 * 109.47430 * 178.68656 * 1 2 3 35 35 H 1.09003 * 109.46971 * 239.99711 * 2 1 3 36 36 H 1.08996 * 109.46915 * 180.02562 * 3 2 1 37 37 H 1.08996 * 109.47030 * 300.00314 * 3 2 1 38 38 H 1.09003 * 109.47288 * 59.99905 * 3 2 1 39 39 H 0.97000 * 120.00117 * 355.48459 * 8 6 4 40 40 H 1.08997 * 110.41163 * 205.97598 * 13 11 9 41 41 H 1.09002 * 110.40836 * 328.40877 * 13 11 9 42 42 H 0.96999 * 120.00678 * 180.02562 * 18 17 15 43 43 H 1.08995 * 110.40325 * 158.36809 * 23 14 13 44 44 H 1.08995 * 110.40475 * 280.68191 * 23 14 13 45 45 H 1.08996 * 109.46315 * 294.17751 * 27 26 4 46 46 H 1.08993 * 109.46277 * 54.15154 * 27 26 4 47 47 H 1.09003 * 109.49954 * 299.24254 * 28 27 26 48 48 H 1.08994 * 109.53712 * 179.14191 * 28 27 26 49 49 H 1.09005 * 109.51963 * 182.43904 * 29 28 27 50 50 H 1.08996 * 109.52331 * 62.25620 * 29 28 27 51 51 H 1.08992 * 109.50774 * 297.71361 * 30 29 28 52 52 H 1.09001 * 109.53516 * 177.61653 * 30 29 28 53 53 H 1.09003 * 109.45930 * 305.85317 * 31 26 4 54 54 H 1.08994 * 109.46468 * 65.83444 * 31 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6139 -0.2548 2.1375 6 6 1.6282 -2.1701 1.1961 7 8 2.3596 -2.9899 0.6826 8 7 0.4472 -2.5545 1.7193 9 6 0.0020 -3.9433 1.5807 10 1 0.5976 -4.5626 0.9100 11 6 -1.5036 -4.2100 1.6358 12 1 -2.1969 -3.3700 1.6791 13 6 -2.0284 -5.5420 1.0580 14 7 -1.9334 -6.5009 2.1833 15 6 -2.8255 -7.4803 2.5300 16 1 -3.8049 -7.5039 2.0757 17 6 -2.4708 -8.4427 3.4653 18 7 -1.2051 -8.6199 3.7799 19 14 -3.7900 -9.4864 4.2777 20 1 -3.9333 -10.7665 3.5388 21 1 -3.4030 -9.7671 5.6837 22 1 -5.0823 -8.7553 4.2565 23 6 -0.6543 -6.1599 2.8486 24 6 -0.5976 -4.6174 2.8164 25 1 -0.6150 -4.0817 3.7655 26 7 3.5052 -0.6304 1.3033 27 6 4.1081 -1.0980 0.0486 28 6 5.6185 -0.8540 0.0850 29 6 6.2234 -1.6046 1.2746 30 6 5.5444 -1.1339 2.5637 31 6 4.0361 -1.3699 2.4556 32 1 -0.3633 0.4933 0.9015 33 1 -0.3633 0.5341 -0.8779 34 1 -0.3634 -1.0273 -0.0236 35 1 1.8934 -0.5139 -0.8900 36 1 3.1301 1.4423 -0.0005 37 1 1.6767 1.9563 -0.8899 38 1 1.6768 1.9563 0.8900 39 1 -0.1080 -1.9117 2.1877 40 1 -3.0643 -5.4350 0.7364 41 1 -1.4032 -5.8684 0.2269 42 1 -0.9572 -9.2926 4.4332 43 1 -0.6536 -6.5189 3.8777 44 1 0.1853 -6.5844 2.2982 45 1 3.9153 -2.1640 -0.0718 46 1 3.6723 -0.5533 -0.7888 47 1 5.8122 0.2133 0.1916 48 1 6.0684 -1.2149 -0.8399 49 1 7.2924 -1.3987 1.3298 50 1 6.0638 -2.6755 1.1489 51 1 5.7369 -0.0711 2.7093 52 1 5.9406 -1.6948 3.4102 53 1 3.5480 -1.0226 3.3662 54 1 3.8438 -2.4346 2.3238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115305680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:23 Heat of formation + Delta-G solvation = 1.927997 kcal Electronic energy + Delta-G solvation = -30626.009657 eV Core-core repulsion = 26791.305717 eV Total energy + Delta-G solvation = -3834.703941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.92373 -40.46863 -38.83946 -36.84523 -36.11016 -34.34065 -33.33352 -32.20165 -31.65671 -28.99527 -28.52822 -27.74810 -27.34427 -24.45202 -24.21989 -23.43909 -22.07200 -21.86764 -20.95475 -20.88796 -20.40099 -18.89835 -18.19999 -17.87325 -17.14937 -16.72492 -16.28636 -16.04683 -15.73026 -15.58955 -15.29346 -14.98066 -14.88324 -14.70383 -14.41211 -14.22115 -14.03537 -13.79964 -13.53811 -13.41042 -13.28053 -13.05954 -12.97577 -12.90615 -12.86928 -12.72731 -12.30516 -12.18465 -12.10184 -11.97672 -11.89429 -11.80953 -11.74699 -11.63966 -11.61230 -11.26493 -11.19921 -11.02903 -10.82451 -10.77148 -9.72815 -9.16740 -8.99882 -7.96012 -5.28305 1.45024 1.45559 1.46751 1.57379 1.95322 2.46828 2.78785 2.84165 3.23582 3.53153 3.64232 3.71687 3.81184 3.87547 3.89460 3.99427 4.05958 4.08653 4.09558 4.31406 4.34200 4.36887 4.45328 4.48065 4.55357 4.58042 4.69634 4.73197 4.81618 4.85178 4.90147 4.90996 4.94096 4.98551 5.03815 5.07017 5.12198 5.16796 5.23172 5.24847 5.26615 5.28830 5.37896 5.40955 5.43430 5.47888 5.55355 5.58821 5.61570 5.96073 6.05044 6.10329 6.49998 6.95333 7.20345 7.64343 8.41694 9.18651 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.002589 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.404243 B =10811.551635 C =11846.074206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.129 4.129 4 C 0.078 3.922 5 H 0.125 0.875 6 C 0.489 3.511 7 O -0.575 6.575 8 N -0.680 5.680 9 C 0.118 3.882 10 H 0.098 0.902 11 C -0.155 4.155 12 H 0.143 0.857 13 C 0.147 3.853 14 N -0.616 5.616 15 C -0.243 4.243 16 H 0.086 0.914 17 C -0.064 4.064 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.190 3.810 24 C -0.185 4.185 25 H 0.121 0.879 26 N -0.493 5.493 27 C 0.030 3.970 28 C -0.110 4.110 29 C -0.123 4.123 30 C -0.108 4.108 31 C 0.041 3.959 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.016 0.984 42 H 0.250 0.750 43 H 0.055 0.945 44 H -0.010 1.010 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.037 0.963 51 H 0.082 0.918 52 H 0.069 0.931 53 H 0.082 0.918 54 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 25.762 -5.174 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.099 4.099 3 C -0.186 4.186 4 C -0.035 4.035 5 H 0.142 0.858 6 C 0.276 3.724 7 O -0.454 6.454 8 N -0.330 5.330 9 C 0.010 3.990 10 H 0.116 0.884 11 C -0.176 4.176 12 H 0.161 0.839 13 C 0.022 3.978 14 N -0.340 5.340 15 C -0.371 4.371 16 H 0.104 0.896 17 C -0.258 4.258 18 N -0.595 5.595 19 Si 0.807 3.193 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.189 1.189 23 C 0.064 3.936 24 C -0.207 4.207 25 H 0.139 0.861 26 N -0.215 5.215 27 C -0.098 4.098 28 C -0.147 4.147 29 C -0.161 4.161 30 C -0.145 4.145 31 C -0.087 4.087 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.008 0.992 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.056 0.944 51 H 0.101 0.899 52 H 0.087 0.913 53 H 0.100 0.900 54 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 9.560 25.488 -5.364 27.745 hybrid contribution -0.865 -2.212 0.592 2.447 sum 8.695 23.277 -4.772 25.302 Atomic orbital electron populations 1.21970 0.93501 1.01977 1.03818 1.21099 0.96604 0.97637 0.94530 1.21664 1.01793 0.92877 1.02279 1.22201 0.90012 0.88408 1.02860 0.85768 1.22719 0.80205 0.93049 0.76391 1.90639 1.52358 1.55960 1.46458 1.45505 1.21158 1.09298 1.57071 1.21313 0.94083 0.84369 0.99198 0.88426 1.24181 0.91977 0.99586 1.01858 0.83931 1.21275 0.99060 0.87814 0.89657 1.45535 1.21926 1.36525 1.30037 1.19414 0.93815 1.03486 1.20396 0.89619 1.25713 0.98191 0.99671 1.02198 1.70157 1.16405 1.36535 1.36433 0.85058 0.78680 0.78207 0.77315 1.21351 1.21902 1.18941 1.20724 0.86513 0.88936 0.97465 1.24352 1.05816 0.96440 0.94073 0.86110 1.62546 1.01970 1.53512 1.03507 1.22492 0.95483 0.99967 0.91841 1.21547 0.93742 1.01303 0.98142 1.21579 1.00292 0.98867 0.95315 1.21506 0.92873 1.02527 0.97624 1.22246 0.97269 0.95386 0.93763 0.90334 0.91103 0.93610 0.92283 0.91937 0.92081 0.91563 0.74666 0.91360 0.96639 0.94117 0.92637 0.99231 0.93898 0.90165 0.90335 0.91375 0.90471 0.94397 0.89931 0.91285 0.89987 0.96819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.88 71.98 0.64 -1.35 16 2 C -0.08 -1.20 1.89 -10.79 -0.02 -1.22 16 3 C -0.13 -1.50 8.80 71.98 0.63 -0.86 16 4 C 0.08 1.41 1.87 44.17 0.08 1.49 16 5 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 6 C 0.49 12.71 5.29 87.66 0.46 13.18 16 7 O -0.58 -20.32 12.12 -3.01 -0.04 -20.36 16 8 N -0.68 -16.42 4.54 -442.54 -2.01 -18.43 16 9 C 0.12 3.87 5.96 44.99 0.27 4.14 16 10 H 0.10 3.92 7.43 -2.39 -0.02 3.90 16 11 C -0.16 -5.11 7.06 -9.88 -0.07 -5.18 16 12 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 13 C 0.15 6.14 7.04 86.53 0.61 6.75 16 14 N -0.62 -32.35 3.38 -688.15 -2.33 -34.67 16 15 C -0.24 -13.73 10.33 84.03 0.87 -12.86 16 16 H 0.09 4.58 7.88 -2.91 -0.02 4.56 16 17 C -0.06 -3.68 5.32 84.86 0.45 -3.23 16 18 N -0.95 -58.22 10.99 21.65 0.24 -57.98 16 19 Si 0.98 45.69 29.58 68.60 2.03 47.72 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.19 9.67 5.76 86.53 0.50 10.17 16 24 C -0.19 -6.99 7.06 -9.88 -0.07 -7.06 16 25 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 26 N -0.49 -9.60 3.87 -875.48 -3.39 -12.99 16 27 C 0.03 0.64 4.28 86.33 0.37 1.01 16 28 C -0.11 -1.95 6.09 30.65 0.19 -1.76 16 29 C -0.12 -2.28 6.00 30.67 0.18 -2.10 16 30 C -0.11 -1.91 6.09 30.65 0.19 -1.72 16 31 C 0.04 0.89 4.96 86.33 0.43 1.31 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.04 0.75 6.71 -2.39 -0.02 0.73 16 35 H 0.06 1.13 6.47 -2.39 -0.02 1.11 16 36 H 0.06 0.84 6.80 -2.39 -0.02 0.82 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.42 7.13 8.83 -92.71 -0.82 6.31 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.06 3.17 6.49 -2.39 -0.02 3.16 16 44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.04 1.28 5.40 -2.39 -0.01 1.27 16 46 H 0.08 1.59 5.45 -2.39 -0.01 1.58 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 50 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 54 H 0.01 0.40 6.41 -2.39 -0.02 0.38 16 Total: -1.00 -71.80 403.05 0.27 -71.53 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.06 Total: 24.48 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.71 Total: 0.70 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -7.49 Total: -124.08 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.04 Total: -20.36 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.80 0.27 -71.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115305680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.462 kcal (2) G-P(sol) polarization free energy of solvation -71.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds