Wall clock time and date at job start Tue Mar 31 2020 19:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46547 * 2 1 4 4 C 1.53040 * 109.45971 * 240.02230 * 2 1 3 5 5 C 1.53192 * 109.31471 * 178.63325 * 4 2 1 6 6 N 1.46927 * 108.77688 * 54.63135 * 5 4 2 7 7 C 1.34780 * 120.62672 * 126.11733 * 6 5 4 8 8 O 1.21275 * 119.99540 * 176.09160 * 7 6 5 9 9 C 1.50702 * 119.99929 * 356.09117 * 7 6 5 10 10 C 1.54140 * 110.74223 * 57.33131 * 9 7 6 11 11 C 1.57069 * 102.00757 * 97.57708 * 10 9 7 12 12 C 1.54838 * 101.72974 * 36.30438 * 11 10 9 13 13 N 1.47860 * 110.77191 * 176.99702 * 9 7 6 14 14 C 1.47949 * 108.37082 * 120.33529 * 13 9 7 15 15 C 1.54834 * 105.06576 * 337.18184 * 14 13 9 16 16 C 1.54133 * 110.74574 * 295.88639 * 9 7 6 17 17 C 1.46927 * 118.73984 * 306.39928 * 6 5 4 18 18 C 1.53045 * 109.44673 * 119.96330 * 2 1 3 19 19 H 1.09005 * 109.49722 * 61.42582 * 18 2 1 20 20 C 1.52992 * 109.49831 * 301.33110 * 18 2 1 21 21 N 1.46498 * 109.47492 * 175.00174 * 20 18 2 22 22 C 1.36940 * 120.00534 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99703 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00216 * 179.97438 * 22 21 20 25 25 N 1.31614 * 120.00450 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99849 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47351 * 90.00436 * 26 24 22 28 28 H 1.48508 * 109.46858 * 210.00406 * 26 24 22 29 29 H 1.48500 * 109.47437 * 329.99992 * 26 24 22 30 30 H 1.08997 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47234 * 299.98121 * 1 2 3 32 32 H 1.09001 * 109.47091 * 59.97225 * 1 2 3 33 33 H 1.08998 * 109.49774 * 58.68148 * 4 2 1 34 34 H 1.08998 * 109.52659 * 298.59815 * 4 2 1 35 35 H 1.09005 * 109.58304 * 294.85194 * 5 4 2 36 36 H 1.09000 * 109.58901 * 174.42398 * 5 4 2 37 37 H 1.08998 * 110.72395 * 215.76095 * 10 9 7 38 38 H 1.08993 * 110.73130 * 339.06427 * 10 9 7 39 39 H 1.09004 * 111.09928 * 278.12335 * 11 10 9 40 40 H 1.08991 * 110.81068 * 154.35677 * 11 10 9 41 41 H 1.09000 * 110.32201 * 204.26446 * 12 11 10 42 42 H 1.08997 * 110.41185 * 82.10151 * 12 11 10 43 43 H 1.09003 * 110.32322 * 218.28641 * 14 13 9 44 44 H 1.09000 * 110.41007 * 96.12694 * 14 13 9 45 45 H 1.09002 * 110.98817 * 278.57898 * 15 14 13 46 46 H 1.08997 * 110.99028 * 154.77211 * 15 14 13 47 47 H 1.08991 * 110.73168 * 20.92165 * 16 9 7 48 48 H 1.09000 * 110.72684 * 144.22595 * 16 9 7 49 49 H 1.09002 * 109.58210 * 173.39420 * 17 6 5 50 50 H 1.08996 * 109.58632 * 293.81466 * 17 6 5 51 51 H 1.09007 * 109.47272 * 294.99586 * 20 18 2 52 52 H 1.09002 * 109.47432 * 54.99553 * 20 18 2 53 53 H 0.97003 * 119.99877 * 359.97438 * 21 20 18 54 54 H 0.96998 * 120.00361 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2499 5 6 3.5713 -0.6893 -1.2639 6 7 4.0676 -1.2495 0.0005 7 6 4.9570 -2.2621 0.0006 8 8 5.4128 -2.6686 1.0484 9 6 5.3851 -2.8892 -1.3011 10 6 5.9843 -1.8294 -2.2465 11 6 7.5258 -2.0107 -2.0056 12 6 7.6360 -3.5429 -1.8117 13 7 6.4140 -3.9257 -1.0705 14 6 5.8977 -5.2161 -1.5777 15 6 4.3572 -5.0608 -1.5789 16 6 4.1920 -3.5752 -1.9951 17 6 3.5710 -0.6890 1.2646 18 6 2.0395 -0.7208 1.2503 19 1 1.6972 -1.7556 1.2385 20 6 1.5024 -0.0187 2.4990 21 7 1.8910 -0.7769 3.6908 22 6 1.5194 -0.3373 4.9333 23 1 0.9401 0.5685 5.0347 24 6 1.8871 -1.0560 6.0625 25 7 1.5304 -0.6334 7.2568 26 14 2.8885 -2.6232 5.8870 27 1 4.3357 -2.2934 5.9299 28 1 2.5584 -3.5488 7.0005 29 1 2.5671 -3.2735 4.5912 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6574 -0.2210 -2.1398 34 1 1.6975 -1.7558 -1.2387 35 1 3.9145 0.3402 -1.3670 36 1 3.9416 -1.2854 -2.0980 37 1 5.7228 -2.0448 -3.2825 38 1 5.6545 -0.8297 -1.9640 39 1 7.8481 -1.4796 -1.1099 40 1 8.0947 -1.6855 -2.8765 41 1 8.5243 -3.7879 -1.2294 42 1 7.6664 -4.0471 -2.7775 43 1 6.1957 -6.0295 -0.9161 44 1 6.2605 -5.3995 -2.5891 45 1 3.9465 -5.2356 -0.5845 46 1 3.8984 -5.7248 -2.3113 47 1 3.2483 -3.1738 -1.6263 48 1 4.2616 -3.4679 -3.0775 49 1 3.9411 -1.2850 2.0989 50 1 3.9141 0.3404 1.3677 51 1 1.9177 0.9875 2.5571 52 1 0.4153 0.0396 2.4438 53 1 2.4109 -1.5907 3.5997 54 1 1.7871 -1.1358 8.0458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132950833.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:33 Heat of formation + Delta-G solvation = -31.540176 kcal Electronic energy + Delta-G solvation = -31782.526083 eV Core-core repulsion = 27946.370854 eV Total energy + Delta-G solvation = -3836.155230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.29938 -40.29421 -38.72538 -36.83390 -35.23338 -34.85695 -33.72420 -32.80013 -31.51280 -29.58523 -28.97395 -27.39457 -26.53159 -24.91274 -24.62123 -22.85667 -22.55884 -22.29025 -21.75309 -20.97990 -19.73864 -19.56492 -17.72717 -17.38129 -17.10625 -16.77553 -16.32806 -16.09799 -15.94358 -15.41391 -15.22314 -15.16557 -14.95535 -14.66859 -14.56614 -14.26345 -14.22048 -14.11582 -14.03908 -13.43482 -13.32762 -13.29253 -13.11943 -12.93492 -12.72533 -12.64386 -12.51513 -12.32776 -12.28352 -12.12479 -12.01313 -11.95417 -11.91256 -11.81779 -11.71034 -11.40219 -11.26258 -11.18470 -11.04617 -10.62503 -9.62973 -9.33680 -9.32175 -8.10173 -5.40979 1.27358 1.32485 1.36131 1.64003 1.88794 2.38637 2.96717 3.22288 3.32840 3.42896 3.48913 3.66744 3.71868 3.80088 3.81057 3.94044 3.96090 4.05521 4.07306 4.16995 4.25211 4.33566 4.39767 4.52077 4.56012 4.56712 4.60078 4.66937 4.72428 4.75206 4.78364 4.80574 4.81902 4.91358 4.93182 4.94409 4.97760 4.99530 5.05599 5.07508 5.13937 5.17479 5.19769 5.21707 5.26772 5.46153 5.55364 5.57642 5.70806 5.84824 6.06744 6.15559 6.49691 7.01222 7.27279 7.79230 7.95485 9.11621 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.003979 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.453757 B = 7034.652744 C = 8344.219899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.090 3.910 6 N -0.609 5.609 7 C 0.517 3.483 8 O -0.580 6.580 9 C 0.076 3.924 10 C -0.133 4.133 11 C -0.131 4.131 12 C 0.037 3.963 13 N -0.532 5.532 14 C 0.039 3.961 15 C -0.134 4.134 16 C -0.128 4.128 17 C 0.124 3.876 18 C -0.091 4.091 19 H 0.055 0.945 20 C 0.158 3.842 21 N -0.763 5.763 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.052 4.052 25 N -0.978 5.978 26 Si 0.941 3.059 27 H -0.288 1.288 28 H -0.286 1.286 29 H -0.269 1.269 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.122 0.878 49 H 0.045 0.955 50 H 0.071 0.929 51 H 0.029 0.971 52 H 0.040 0.960 53 H 0.359 0.641 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 -3.296 -35.291 36.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.102 0.898 4 C -0.161 4.161 5 C -0.031 4.031 6 N -0.342 5.342 7 C 0.305 3.695 8 O -0.458 6.458 9 C -0.017 4.017 10 C -0.171 4.171 11 C -0.169 4.169 12 C -0.090 4.090 13 N -0.256 5.256 14 C -0.088 4.088 15 C -0.172 4.172 16 C -0.166 4.166 17 C 0.001 3.999 18 C -0.111 4.111 19 H 0.074 0.926 20 C 0.032 3.968 21 N -0.408 5.408 22 C -0.360 4.360 23 H 0.085 0.915 24 C -0.244 4.244 25 N -0.629 5.629 26 Si 0.770 3.230 27 H -0.215 1.215 28 H -0.213 1.213 29 H -0.195 1.195 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.125 0.875 47 H 0.097 0.903 48 H 0.140 0.860 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.047 0.953 52 H 0.058 0.942 53 H 0.192 0.808 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.135 -3.434 -34.031 34.940 hybrid contribution 0.491 -1.017 0.991 1.503 sum 7.626 -4.451 -33.040 34.199 Atomic orbital electron populations 1.21865 0.94302 1.01794 1.02389 1.21078 0.96383 0.99683 0.92538 0.89815 1.22028 0.94221 1.01431 0.98392 1.22470 0.95098 1.00569 0.84975 1.48203 1.43210 1.34898 1.07910 1.21190 0.77983 0.78842 0.91472 1.90679 1.56174 1.63209 1.35769 1.22180 0.94507 0.94214 0.90824 1.23632 0.95161 0.98442 0.99892 1.23097 0.96335 0.95151 1.02320 1.23293 0.92560 0.96081 0.97103 1.64660 1.04168 1.02066 1.54714 1.23272 0.94652 0.91352 0.99565 1.22777 0.95749 0.97179 1.01481 1.23121 0.96567 0.94798 1.02119 1.21390 0.94007 0.98384 0.86141 1.21621 0.93838 0.99799 0.95809 0.92644 1.20942 0.97700 0.93960 0.84168 1.42901 1.66150 1.28928 1.02818 1.19096 1.26694 1.06462 0.83703 0.91514 1.25258 1.02435 1.01721 0.94972 1.69827 1.53050 1.42253 0.97748 0.85640 0.78905 0.81312 0.77174 1.21527 1.21254 1.19452 0.93335 0.93500 0.90113 0.86782 0.91865 0.89386 0.86511 0.86062 0.89133 0.93438 0.87438 0.91457 0.90303 0.91625 0.90100 0.94079 0.87519 0.90263 0.86025 0.93613 0.91078 0.95325 0.94212 0.80821 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.82 71.98 0.63 -2.17 16 2 C -0.08 -1.55 2.23 -10.77 -0.02 -1.57 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 4 C -0.12 -1.62 5.27 30.67 0.16 -1.46 16 5 C 0.09 1.27 3.82 86.36 0.33 1.60 16 6 N -0.61 -15.84 2.91 -818.90 -2.38 -18.22 16 7 C 0.52 16.06 6.50 87.66 0.57 16.63 16 8 O -0.58 -25.66 15.94 -3.01 -0.05 -25.71 16 9 C 0.08 1.55 0.62 3.37 0.00 1.55 16 10 C -0.13 -1.63 4.67 32.41 0.15 -1.48 16 11 C -0.13 -1.90 7.12 32.65 0.23 -1.66 16 12 C 0.04 0.62 6.75 86.73 0.59 1.20 16 13 N -0.53 -12.41 4.93 -831.19 -4.10 -16.51 16 14 C 0.04 0.70 6.74 86.73 0.58 1.28 16 15 C -0.13 -2.27 7.07 31.96 0.23 -2.05 16 16 C -0.13 -1.80 4.77 31.72 0.15 -1.65 16 17 C 0.12 4.12 5.51 86.36 0.48 4.60 16 18 C -0.09 -2.79 1.92 -10.72 -0.02 -2.81 16 19 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 20 C 0.16 6.21 5.41 86.38 0.47 6.67 16 21 N -0.76 -38.87 5.18 -343.46 -1.78 -40.64 16 22 C -0.23 -13.81 10.47 84.03 0.88 -12.93 16 23 H 0.07 4.28 8.06 -2.91 -0.02 4.26 16 24 C -0.05 -3.26 5.50 84.86 0.47 -2.79 16 25 N -0.98 -65.37 13.97 21.65 0.30 -65.07 16 26 Si 0.94 51.26 27.73 68.60 1.90 53.16 16 27 H -0.29 -15.91 7.11 99.48 0.71 -15.20 16 28 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 29 H -0.27 -14.10 6.52 99.48 0.65 -13.45 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 1.08 6.29 -2.39 -0.02 1.07 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.93 7.27 -2.39 -0.02 0.92 16 35 H 0.09 0.99 8.09 -2.38 -0.02 0.97 16 36 H 0.12 1.06 3.61 -2.39 -0.01 1.05 16 37 H 0.12 0.58 7.32 -2.39 -0.02 0.57 16 38 H 0.09 1.08 5.59 -2.39 -0.01 1.07 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 0.87 7.13 -2.39 -0.02 0.85 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 0.94 7.14 -2.39 -0.02 0.93 16 45 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.08 1.22 5.75 -2.39 -0.01 1.20 16 48 H 0.12 0.75 7.32 -2.39 -0.02 0.73 16 49 H 0.05 1.98 6.24 -2.39 -0.01 1.97 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 52 H 0.04 1.55 6.14 -2.39 -0.01 1.53 16 53 H 0.36 18.65 4.76 -92.71 -0.44 18.21 16 54 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -86.31 389.43 0.16 -86.15 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.39 Total: 23.87 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 5.87 Total: 2.97 kcal Atomic # 7 Polarization: -132.49 SS G_CDS: -7.96 Total: -140.44 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.90 Total: 53.16 kcal Total: -86.31 0.16 -86.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132950833.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.609 kcal (2) G-P(sol) polarization free energy of solvation -86.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds