Wall clock time and date at job start Tue Mar 31 2020 19:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.59892 * 2 1 4 4 C 1.54936 * 110.66859 * 236.98972 * 2 1 3 5 5 C 1.54596 * 102.92448 * 203.98418 * 4 2 1 6 6 C 1.53995 * 105.13789 * 21.95996 * 5 4 2 7 7 H 1.09000 * 109.91666 * 241.67477 * 6 5 4 8 8 C 1.52998 * 109.91542 * 120.57733 * 6 5 4 9 9 N 1.47904 * 107.05865 * 1.22535 * 6 5 4 10 10 C 1.46898 * 110.99835 * 214.16070 * 9 6 5 11 11 C 1.50701 * 109.47567 * 63.25511 * 10 9 6 12 12 O 1.21275 * 119.99709 * 353.66862 * 11 10 9 13 13 N 1.34774 * 120.00122 * 173.67378 * 11 10 9 14 14 C 1.46501 * 120.00029 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46917 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47010 * 179.97438 * 15 14 13 17 17 C 1.29453 * 117.69582 * 94.99947 * 16 15 14 18 18 C 1.50316 * 123.65292 * 180.86200 * 17 16 15 19 19 N 1.47007 * 109.16787 * 349.01742 * 18 17 16 20 20 C 1.36933 * 121.37724 * 222.92783 * 19 18 17 21 21 H 1.08001 * 119.99933 * 154.90145 * 20 19 18 22 22 C 1.38812 * 120.00415 * 334.90357 * 20 19 18 23 23 N 1.31620 * 119.99360 * 345.32385 * 22 20 19 24 24 Si 1.86796 * 120.00421 * 165.32581 * 22 20 19 25 25 H 1.48496 * 109.47056 * 59.99750 * 24 22 20 26 26 H 1.48502 * 109.47414 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46951 * 299.99901 * 24 22 20 28 28 C 1.47341 * 117.24641 * 42.95252 * 19 18 17 29 29 C 1.49967 * 117.69293 * 274.73959 * 16 15 14 30 30 H 1.09002 * 109.47397 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47177 * 299.91708 * 1 2 3 32 32 H 1.08996 * 109.47652 * 59.92220 * 1 2 3 33 33 H 1.09005 * 110.72117 * 85.62687 * 4 2 1 34 34 H 1.09004 * 110.88030 * 322.41701 * 4 2 1 35 35 H 1.08995 * 110.31041 * 263.04362 * 5 4 2 36 36 H 1.09001 * 110.39059 * 140.91802 * 5 4 2 37 37 H 1.09002 * 109.47171 * 61.45381 * 8 6 5 38 38 H 1.08994 * 109.47201 * 301.45194 * 8 6 5 39 39 H 1.09007 * 109.46772 * 181.45168 * 8 6 5 40 40 H 1.08992 * 109.47231 * 183.25915 * 10 9 6 41 41 H 1.09004 * 109.46704 * 303.25312 * 10 9 6 42 42 H 0.97004 * 120.00129 * 0.02562 * 13 11 10 43 43 H 1.08996 * 109.46988 * 299.99752 * 14 13 11 44 44 H 1.08988 * 109.46846 * 59.99987 * 14 13 11 45 45 H 1.08999 * 109.47511 * 300.00009 * 15 14 13 46 46 H 1.09005 * 109.47137 * 60.00178 * 15 14 13 47 47 H 1.08008 * 118.17167 * 0.83708 * 17 16 15 48 48 H 1.08999 * 109.52567 * 108.92921 * 18 17 16 49 49 H 1.09011 * 109.51752 * 229.11626 * 18 17 16 50 50 H 0.97007 * 119.99983 * 180.02562 * 23 22 20 51 51 H 1.08996 * 109.78071 * 57.80665 * 28 19 18 52 52 H 1.08999 * 109.77657 * 178.56348 * 28 19 18 53 53 H 1.09002 * 109.31906 * 281.28542 * 29 16 15 54 54 H 1.08996 * 109.31645 * 40.71571 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0768 -0.7897 -1.2156 5 6 3.4869 -1.2149 -0.7458 6 6 3.4317 -1.1608 0.7922 7 1 4.1492 -0.4294 1.1641 8 6 3.7455 -2.5407 1.3738 9 7 2.0576 -0.7583 1.1631 10 6 2.0613 0.0720 2.3749 11 6 2.8119 1.3507 2.1056 12 8 3.3934 1.5020 1.0522 13 7 2.8371 2.3260 3.0354 14 6 3.5663 3.5693 2.7733 15 6 3.4361 4.5009 3.9800 16 6 4.1868 5.7796 3.7107 17 6 3.5176 6.7820 3.2383 18 6 4.1339 8.1116 2.9039 19 7 5.5026 8.1572 3.4385 20 6 5.9840 9.2720 4.0714 21 1 6.7850 9.1813 4.7902 22 6 5.4425 10.5186 3.7893 23 7 4.6834 10.6811 2.7264 24 14 5.7912 11.9656 4.9180 25 1 7.2545 12.2131 4.9679 26 1 5.1015 13.1746 4.4005 27 1 5.2941 11.6592 6.2835 28 6 6.3352 6.9541 3.2646 29 6 5.6552 5.8029 4.0144 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5125 0.8907 32 1 -0.3634 0.5150 -0.8892 33 1 2.1402 -0.1488 -2.0951 34 1 1.4588 -1.6639 -1.4209 35 1 4.2369 -0.5192 -1.1220 36 1 3.7096 -2.2279 -1.0810 37 1 4.7529 -2.8375 1.0821 38 1 3.0280 -3.2674 0.9927 39 1 3.6791 -2.5004 2.4611 40 1 1.0352 0.3058 2.6583 41 1 2.5474 -0.4708 3.1857 42 1 2.3723 2.2047 3.8782 43 1 4.6184 3.3437 2.5999 44 1 3.1490 4.0563 1.8921 45 1 2.3839 4.7264 4.1531 46 1 3.8532 4.0140 4.8616 47 1 2.4574 6.6558 3.0749 48 1 4.1611 8.2387 1.8217 49 1 3.5416 8.9102 3.3507 50 1 4.3052 11.5523 2.5290 51 1 6.4167 6.7119 2.2050 52 1 7.3275 7.1291 3.6803 53 1 5.7995 5.9316 5.0872 54 1 6.1026 4.8588 3.7040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161924801.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:25 Heat of formation + Delta-G solvation = -17.722321 kcal Electronic energy + Delta-G solvation = -29464.211594 eV Core-core repulsion = 25628.655551 eV Total energy + Delta-G solvation = -3835.556042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.67631 -39.70038 -39.06137 -36.69212 -35.11768 -33.56725 -33.47287 -33.02215 -31.52246 -30.35043 -29.26530 -27.68730 -26.43158 -24.75935 -24.63775 -23.92540 -22.51124 -21.93360 -21.42876 -20.83085 -19.48139 -18.05970 -17.55511 -17.42004 -17.06075 -16.69173 -16.56969 -16.03488 -15.73308 -15.63807 -15.43667 -15.21101 -15.14372 -14.73877 -14.37793 -14.15074 -13.98100 -13.89433 -13.58333 -13.40481 -13.24509 -13.03760 -12.92247 -12.86557 -12.77142 -12.69631 -12.59283 -12.38059 -12.29152 -12.22356 -11.92244 -11.89582 -11.71490 -11.62999 -11.56271 -11.44941 -11.26244 -11.17444 -10.69713 -10.05033 -9.53505 -9.26310 -8.76131 -7.89865 -5.33625 1.39519 1.45294 1.48133 1.54917 1.57894 2.25563 2.49487 2.91985 3.26875 3.63796 3.67453 3.79421 3.82871 3.93899 4.08242 4.11680 4.18680 4.26004 4.28030 4.34836 4.50272 4.52421 4.54845 4.55637 4.55981 4.66236 4.71392 4.78182 4.83147 4.87232 4.88677 4.89565 4.95261 4.98888 5.04568 5.07729 5.15003 5.18063 5.20825 5.21883 5.28353 5.38052 5.39451 5.44597 5.47438 5.48662 5.58727 5.85325 5.94768 6.01731 6.25950 6.31979 6.56191 7.11109 7.24401 7.80698 8.36357 9.18594 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.001931 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.970353 B =14499.182867 C =14719.963152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.039 3.961 3 H 0.060 0.940 4 C -0.113 4.113 5 C -0.122 4.122 6 C 0.057 3.943 7 H 0.046 0.954 8 C -0.129 4.129 9 N -0.484 5.484 10 C 0.027 3.973 11 C 0.474 3.526 12 O -0.573 6.573 13 N -0.715 5.715 14 C 0.135 3.865 15 C -0.078 4.078 16 C -0.120 4.120 17 C -0.175 4.175 18 C 0.208 3.792 19 N -0.615 5.615 20 C -0.260 4.260 21 H 0.071 0.929 22 C -0.057 4.057 23 N -0.942 5.942 24 Si 0.973 3.027 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.135 3.865 29 C -0.086 4.086 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.417 0.583 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.001 0.999 49 H 0.054 0.946 50 H 0.250 0.750 51 H 0.016 0.984 52 H 0.059 0.941 53 H 0.070 0.930 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -28.526 0.651 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.069 4.069 3 H 0.077 0.923 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.051 4.051 7 H 0.064 0.936 8 C -0.187 4.187 9 N -0.206 5.206 10 C -0.105 4.105 11 C 0.261 3.739 12 O -0.454 6.454 13 N -0.368 5.368 14 C 0.010 3.990 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.195 4.195 18 C 0.083 3.917 19 N -0.339 5.339 20 C -0.390 4.390 21 H 0.089 0.911 22 C -0.252 4.252 23 N -0.588 5.588 24 Si 0.801 3.199 25 H -0.200 1.200 26 H -0.220 1.220 27 H -0.203 1.203 28 C 0.010 3.990 29 C -0.125 4.125 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.254 0.746 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.130 0.870 48 H 0.019 0.981 49 H 0.072 0.928 50 H 0.059 0.941 51 H 0.034 0.966 52 H 0.077 0.923 53 H 0.088 0.912 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.534 -28.740 -0.019 29.981 hybrid contribution 0.630 2.343 0.213 2.435 sum -7.904 -26.398 0.194 27.556 Atomic orbital electron populations 1.21658 0.92952 1.02554 1.01662 1.23113 0.96120 0.97356 0.90313 0.92273 1.22442 0.96002 0.99884 0.96825 1.22350 0.97266 1.01602 0.94757 1.22422 0.89816 0.97403 0.95493 0.93630 1.21741 1.01144 0.94946 1.00845 1.65081 1.18558 1.34257 1.02720 1.22620 1.02592 0.88936 0.96348 1.22552 0.80886 0.86948 0.83512 1.90678 1.46510 1.81513 1.26675 1.46115 1.53845 1.16319 1.20527 1.21082 0.96194 0.84117 0.97585 1.20798 1.00728 0.92400 0.97594 1.20596 0.95840 0.94933 1.00748 1.22821 0.99721 0.96053 1.00878 1.19329 0.85207 0.92890 0.94321 1.44416 1.09725 1.12307 1.67488 1.19500 1.18011 0.85543 1.15934 0.91132 1.25858 1.01083 0.99983 0.98238 1.70191 1.38689 1.23257 1.26694 0.85253 0.77885 0.78298 0.78487 1.20009 1.22024 1.20279 1.21187 0.94168 0.87103 0.96564 1.20737 0.92663 0.98602 1.00472 0.91397 0.92616 0.92193 0.91906 0.90047 0.93396 0.90044 0.92112 0.91811 0.92308 0.85532 0.85542 0.74557 0.92785 0.93805 0.89834 0.88872 0.86957 0.98128 0.92785 0.94111 0.96636 0.92253 0.91201 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.49 71.98 0.68 -1.27 16 2 C 0.04 0.74 2.50 45.26 0.11 0.86 16 3 H 0.06 1.53 5.06 -2.39 -0.01 1.52 16 4 C -0.11 -2.05 6.49 31.80 0.21 -1.84 16 5 C -0.12 -2.29 6.57 31.47 0.21 -2.08 16 6 C 0.06 1.06 2.38 45.06 0.11 1.16 16 7 H 0.05 1.08 5.80 -2.39 -0.01 1.07 16 8 C -0.13 -1.78 9.32 71.98 0.67 -1.11 16 9 N -0.48 -8.20 4.87 -837.99 -4.08 -12.27 16 10 C 0.03 0.36 5.84 85.56 0.50 0.86 16 11 C 0.47 9.52 6.73 87.66 0.59 10.11 16 12 O -0.57 -16.60 11.79 -3.02 -0.04 -16.64 16 13 N -0.71 -12.00 5.56 -463.09 -2.57 -14.57 16 14 C 0.13 3.09 5.66 86.38 0.49 3.58 16 15 C -0.08 -1.69 5.32 29.85 0.16 -1.53 16 16 C -0.12 -3.90 5.11 -15.14 -0.08 -3.98 16 17 C -0.18 -6.79 9.47 27.11 0.26 -6.54 16 18 C 0.21 10.55 5.21 85.42 0.44 10.99 16 19 N -0.62 -32.18 3.00 -703.01 -2.11 -34.29 16 20 C -0.26 -14.67 9.70 84.03 0.82 -13.86 16 21 H 0.07 3.83 7.87 -2.91 -0.02 3.81 16 22 C -0.06 -3.25 5.02 84.86 0.43 -2.83 16 23 N -0.94 -57.14 11.11 21.65 0.24 -56.90 16 24 Si 0.97 45.57 29.58 68.60 2.03 47.60 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 28 C 0.14 5.77 6.59 86.32 0.57 6.33 16 29 C -0.09 -2.87 5.95 29.72 0.18 -2.69 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.76 7.63 -2.39 -0.02 0.74 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.25 8.06 -2.39 -0.02 1.23 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.25 7.69 -2.39 -0.02 1.23 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.13 1.14 7.62 -2.39 -0.02 1.12 16 41 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.42 3.98 8.47 -92.71 -0.79 3.19 16 43 H 0.05 1.41 8.11 -2.39 -0.02 1.39 16 44 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 1.62 7.78 -2.39 -0.02 1.60 16 46 H 0.09 1.65 8.11 -2.38 -0.02 1.63 16 47 H 0.11 3.79 7.73 -2.91 -0.02 3.77 16 48 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.05 3.06 6.47 -2.38 -0.02 3.05 16 50 H 0.25 14.68 8.31 -92.70 -0.77 13.90 16 51 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 53 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 54 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 Total: -1.00 -71.85 413.04 -0.12 -71.97 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.07 Total: 18.93 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.33 Total: -3.82 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -8.52 Total: -118.04 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.04 Total: -16.64 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.85 -0.12 -71.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161924801.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.249 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds