Wall clock time and date at job start Tue Mar 31 2020 19:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.42174 * 2 1 4 4 C 1.54908 * 110.37444 * 237.67879 * 2 1 3 5 5 C 1.55137 * 101.65207 * 204.10236 * 4 2 1 6 6 C 1.54321 * 103.01984 * 35.65992 * 5 4 2 7 7 H 1.09000 * 109.88831 * 97.11573 * 6 5 4 8 8 C 1.53004 * 109.88677 * 218.30951 * 6 5 4 9 9 N 1.47439 * 107.23228 * 337.71189 * 6 5 4 10 10 C 1.46899 * 110.99929 * 236.74360 * 9 6 5 11 11 C 1.50701 * 109.47273 * 72.23036 * 10 9 6 12 12 O 1.21288 * 119.99704 * 354.45536 * 11 10 9 13 13 N 1.34780 * 120.00157 * 174.18402 * 11 10 9 14 14 C 1.46496 * 119.99697 * 180.27515 * 13 11 10 15 15 C 1.53004 * 109.47049 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47272 * 179.97438 * 15 14 13 17 17 C 1.29456 * 117.69199 * 94.99847 * 16 15 14 18 18 C 1.50326 * 123.64970 * 180.85284 * 17 16 15 19 19 N 1.47004 * 109.16583 * 349.02838 * 18 17 16 20 20 C 1.36935 * 121.37340 * 222.96271 * 19 18 17 21 21 H 1.08000 * 119.99929 * 153.90138 * 20 19 18 22 22 C 1.38812 * 119.99976 * 333.89670 * 20 19 18 23 23 N 1.31609 * 120.00338 * 345.32568 * 22 20 19 24 24 Si 1.86808 * 119.99864 * 165.31952 * 22 20 19 25 25 H 1.48505 * 109.46710 * 60.00195 * 24 22 20 26 26 H 1.48495 * 109.47296 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47204 * 300.00490 * 24 22 20 28 28 C 1.47344 * 117.25050 * 42.94381 * 19 18 17 29 29 C 1.49968 * 117.69707 * 274.73682 * 16 15 14 30 30 H 1.09000 * 109.47006 * 302.81448 * 1 2 3 31 31 H 1.09001 * 109.46791 * 62.81485 * 1 2 3 32 32 H 1.09003 * 109.46948 * 182.81018 * 1 2 3 33 33 H 1.09002 * 110.98451 * 86.01017 * 4 2 1 34 34 H 1.09002 * 110.99203 * 322.20099 * 4 2 1 35 35 H 1.08997 * 110.71000 * 277.27360 * 5 4 2 36 36 H 1.09001 * 110.70124 * 154.03803 * 5 4 2 37 37 H 1.08993 * 109.46973 * 169.87984 * 8 6 5 38 38 H 1.09005 * 109.47000 * 289.87897 * 8 6 5 39 39 H 1.08999 * 109.47072 * 49.87568 * 8 6 5 40 40 H 1.08996 * 109.47263 * 312.22439 * 10 9 6 41 41 H 1.09002 * 109.46729 * 192.22455 * 10 9 6 42 42 H 0.96993 * 119.99518 * 0.27295 * 13 11 10 43 43 H 1.09004 * 109.47125 * 299.99283 * 14 13 11 44 44 H 1.09002 * 109.47673 * 59.99621 * 14 13 11 45 45 H 1.09000 * 109.46774 * 300.00022 * 15 14 13 46 46 H 1.09001 * 109.47000 * 59.99790 * 15 14 13 47 47 H 1.07995 * 118.17421 * 0.83785 * 17 16 15 48 48 H 1.09007 * 109.51535 * 108.93452 * 18 17 16 49 49 H 1.08993 * 109.52544 * 229.11872 * 18 17 16 50 50 H 0.97001 * 120.00681 * 179.97438 * 23 22 20 51 51 H 1.09001 * 109.77965 * 57.81148 * 28 19 18 52 52 H 1.09005 * 109.77418 * 178.56216 * 28 19 18 53 53 H 1.09001 * 109.31785 * 281.29343 * 29 16 15 54 54 H 1.09002 * 109.31027 * 40.71814 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0694 -0.7764 -1.2272 5 6 3.4786 -1.1996 -0.7356 6 6 3.2535 -1.4808 0.7650 7 1 3.1054 -2.5489 0.9240 8 6 4.4582 -0.9932 1.5724 9 7 2.0447 -0.7409 1.1715 10 6 2.3357 0.1717 2.2852 11 6 3.1522 1.3341 1.7820 12 8 3.5466 1.3467 0.6351 13 7 3.4395 2.3622 2.6048 14 6 4.2281 3.4950 2.1138 15 6 4.4100 4.5157 3.2391 16 6 5.2217 5.6806 2.7342 17 6 4.5801 6.7171 2.2984 18 6 5.2537 7.9433 1.7486 19 7 6.6941 7.8715 2.0336 20 6 7.3888 8.9657 2.4756 21 1 8.2845 8.8349 3.0646 22 6 6.9417 10.2430 2.1664 23 7 6.0372 10.4139 1.2258 24 14 7.6238 11.7192 3.0857 25 1 9.0929 11.7940 2.8813 26 1 6.9884 12.9591 2.5720 27 1 7.3323 11.5779 4.5349 28 6 7.3593 6.5735 1.8246 29 6 6.7159 5.5599 2.7776 30 1 -0.3633 0.5569 0.8637 31 1 -0.3633 0.4695 -0.9142 32 1 -0.3633 -1.0265 0.0504 33 1 2.1389 -0.1273 -2.1001 34 1 1.4515 -1.6489 -1.4396 35 1 4.1942 -0.3890 -0.8727 36 1 3.8119 -2.1006 -1.2507 37 1 4.2212 -1.0283 2.6356 38 1 5.3154 -1.6355 1.3698 39 1 4.6964 0.0313 1.2867 40 1 2.8961 -0.3603 3.0539 41 1 1.4005 0.5401 2.7068 42 1 3.1240 2.3520 3.5220 43 1 5.2048 3.1415 1.7832 44 1 3.7092 3.9638 1.2778 45 1 3.4335 4.8691 3.5702 46 1 4.9291 4.0465 4.0748 47 1 3.5008 6.6997 2.3316 48 1 5.0976 7.9922 0.6709 49 1 4.8332 8.8319 2.2191 50 1 5.7245 11.3065 1.0100 51 1 7.2242 6.2518 0.7919 52 1 8.4227 6.6641 2.0466 53 1 7.0632 5.7445 3.7942 54 1 7.0050 4.5525 2.4783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161924803.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:33 Heat of formation + Delta-G solvation = 5.727338 kcal Electronic energy + Delta-G solvation = -29871.860672 eV Core-core repulsion = 26037.321483 eV Total energy + Delta-G solvation = -3834.539189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.07451 -39.68592 -38.96573 -36.64536 -35.09784 -33.91005 -33.28845 -32.89820 -31.51787 -30.31065 -29.03235 -27.82839 -26.57662 -24.75077 -24.56677 -23.90925 -22.49394 -21.85976 -21.79838 -20.27394 -19.47494 -18.26713 -17.69143 -17.31738 -17.08234 -17.05023 -16.63679 -16.02950 -15.74677 -15.54094 -15.37319 -15.18213 -15.11530 -14.60775 -14.33429 -14.16669 -13.96493 -13.87602 -13.72055 -13.42159 -13.32494 -13.15928 -12.84413 -12.77924 -12.61402 -12.55635 -12.51289 -12.36192 -12.30820 -12.22347 -11.96291 -11.81920 -11.72874 -11.64735 -11.48598 -11.24683 -11.23624 -10.96870 -10.69186 -10.01841 -9.52413 -9.13746 -8.74498 -7.89862 -5.34372 1.40570 1.45364 1.48144 1.54941 1.61128 2.28017 2.49544 2.94464 3.26994 3.64646 3.73890 3.78536 3.85453 3.95236 4.06250 4.12200 4.17428 4.27271 4.31885 4.34611 4.48100 4.51411 4.53322 4.57238 4.62755 4.63548 4.68143 4.77246 4.84046 4.85834 4.89068 4.89866 4.96914 5.02508 5.04295 5.08806 5.15969 5.18838 5.21589 5.23793 5.27302 5.38133 5.42097 5.47634 5.48566 5.59014 5.59707 5.86328 6.02824 6.06413 6.26792 6.32553 6.60351 7.11475 7.28994 7.80939 8.37029 9.18575 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.002026 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.781567 B =13817.017046 C =14029.829059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.044 3.956 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.129 4.129 6 C 0.074 3.926 7 H 0.090 0.910 8 C -0.192 4.192 9 N -0.499 5.499 10 C 0.022 3.978 11 C 0.480 3.520 12 O -0.562 6.562 13 N -0.715 5.715 14 C 0.136 3.864 15 C -0.078 4.078 16 C -0.119 4.119 17 C -0.176 4.176 18 C 0.208 3.792 19 N -0.615 5.615 20 C -0.261 4.261 21 H 0.070 0.930 22 C -0.055 4.055 23 N -0.941 5.941 24 Si 0.972 3.028 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.135 3.865 29 C -0.086 4.086 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.416 0.584 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.112 0.888 48 H 0.001 0.999 49 H 0.051 0.949 50 H 0.250 0.750 51 H 0.015 0.985 52 H 0.058 0.942 53 H 0.069 0.931 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 -26.565 4.750 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.168 4.168 6 C -0.034 4.034 7 H 0.108 0.892 8 C -0.249 4.249 9 N -0.222 5.222 10 C -0.109 4.109 11 C 0.267 3.733 12 O -0.442 6.442 13 N -0.368 5.368 14 C 0.011 3.989 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.195 4.195 18 C 0.083 3.917 19 N -0.339 5.339 20 C -0.391 4.391 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.588 5.588 24 Si 0.800 3.200 25 H -0.200 1.200 26 H -0.220 1.220 27 H -0.203 1.203 28 C 0.010 3.990 29 C -0.125 4.125 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.253 0.747 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.130 0.870 48 H 0.019 0.981 49 H 0.070 0.930 50 H 0.059 0.941 51 H 0.034 0.966 52 H 0.077 0.923 53 H 0.088 0.912 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.424 -26.769 4.072 29.015 hybrid contribution 0.907 2.080 -0.093 2.271 sum -9.517 -24.689 3.979 26.757 Atomic orbital electron populations 1.21694 0.93636 1.02203 1.01327 1.23028 0.95586 0.98390 0.89355 0.91155 1.22595 0.96139 0.99754 0.97036 1.22750 0.97361 1.00857 0.95808 1.22325 0.88506 0.98499 0.94039 0.89170 1.22878 0.98229 1.03126 1.00704 1.64070 1.27415 1.23477 1.07196 1.22761 1.00856 0.90520 0.96798 1.22305 0.80083 0.84852 0.86033 1.90658 1.53674 1.80225 1.19686 1.46113 1.54787 1.19866 1.16063 1.21076 0.95133 0.86229 0.96442 1.20801 1.00190 0.93150 0.97446 1.20598 0.95505 0.95240 1.00677 1.22810 0.99641 0.96308 1.00749 1.19306 0.83298 0.94046 0.95015 1.44399 1.04381 1.07091 1.78017 1.19487 1.08871 0.85222 1.25524 0.91210 1.25866 1.00442 1.00475 0.98221 1.70180 1.35199 1.21589 1.31798 0.85270 0.78042 0.78362 0.78351 1.19988 1.22016 1.20267 1.21186 0.96064 0.85906 0.95852 1.20734 0.92410 0.99158 1.00148 0.92754 0.92466 0.91887 0.92128 0.90418 0.92777 0.90787 0.90668 0.92309 0.91673 0.84898 0.86191 0.74665 0.92663 0.93768 0.89913 0.88892 0.86970 0.98126 0.93035 0.94097 0.96643 0.92316 0.91245 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.59 71.98 0.69 -1.39 16 2 C 0.04 0.85 2.41 45.39 0.11 0.96 16 3 H 0.07 1.76 4.70 -4.78 -0.02 1.74 16 4 C -0.12 -2.23 6.50 31.98 0.21 -2.02 16 5 C -0.13 -2.53 5.94 31.77 0.19 -2.34 16 6 C 0.07 1.27 3.72 45.26 0.17 1.44 16 7 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 8 C -0.19 -3.19 7.72 71.98 0.56 -2.64 16 9 N -0.50 -8.36 5.07 -840.27 -4.26 -12.61 16 10 C 0.02 0.29 5.58 85.56 0.48 0.76 16 11 C 0.48 8.97 5.27 87.66 0.46 9.43 16 12 O -0.56 -14.92 9.63 -3.06 -0.03 -14.95 16 13 N -0.72 -11.28 5.56 -463.04 -2.57 -13.85 16 14 C 0.14 2.98 5.66 86.38 0.49 3.47 16 15 C -0.08 -1.66 5.32 29.85 0.16 -1.50 16 16 C -0.12 -3.81 5.11 -15.14 -0.08 -3.89 16 17 C -0.18 -6.74 9.47 27.10 0.26 -6.49 16 18 C 0.21 10.54 5.20 85.42 0.44 10.98 16 19 N -0.61 -32.03 3.00 -703.03 -2.11 -34.14 16 20 C -0.26 -14.71 9.69 84.03 0.81 -13.89 16 21 H 0.07 3.78 7.87 -2.91 -0.02 3.76 16 22 C -0.06 -3.15 5.01 84.86 0.43 -2.72 16 23 N -0.94 -57.06 11.18 21.65 0.24 -56.82 16 24 Si 0.97 45.47 29.58 68.60 2.03 47.50 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 28 C 0.14 5.74 6.59 86.31 0.57 6.31 16 29 C -0.09 -2.83 5.95 29.71 0.18 -2.65 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 35 H 0.05 1.34 6.76 -2.39 -0.02 1.33 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 0.95 5.78 -2.39 -0.01 0.93 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.06 1.44 4.25 -2.39 -0.01 1.43 16 40 H 0.13 1.17 5.72 -2.39 -0.01 1.16 16 41 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.42 3.71 8.47 -92.71 -0.79 2.92 16 43 H 0.05 1.38 8.11 -2.38 -0.02 1.36 16 44 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.57 7.78 -2.39 -0.02 1.56 16 46 H 0.09 1.60 8.11 -2.39 -0.02 1.58 16 47 H 0.11 3.75 7.73 -2.91 -0.02 3.73 16 48 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 49 H 0.05 2.91 6.55 -2.39 -0.02 2.89 16 50 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 51 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.06 2.40 7.96 -2.38 -0.02 2.39 16 53 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 54 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 Total: -1.00 -70.43 402.03 -0.50 -70.93 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.08 Total: 20.12 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 6.12 Total: -6.18 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -8.69 Total: -117.42 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.03 Total: -14.95 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.43 -0.50 -70.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161924803.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.657 kcal (2) G-P(sol) polarization free energy of solvation -70.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds