Wall clock time and date at job start Tue Mar 31 2020 19:25:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52997 * 109.47324 * 2 1
4 4 N 1.46898 * 109.47142 * 120.00497 * 2 1 3
5 5 C 1.46897 * 111.00007 * 306.04389 * 4 2 1
6 6 C 1.46898 * 111.00147 * 69.99652 * 4 2 1
7 7 C 1.50702 * 109.47153 * 170.00076 * 6 4 2
8 8 O 1.21279 * 120.00078 * 0.02562 * 7 6 4
9 9 N 1.34774 * 119.99777 * 180.27411 * 7 6 4
10 10 C 1.49013 * 125.86692 * 179.44117 * 9 7 6
11 11 C 1.52081 * 105.24139 * 187.01757 * 10 9 7
12 12 H 1.08998 * 110.59994 * 84.37981 * 11 10 9
13 13 C 1.56298 * 99.43518 * 327.42144 * 11 10 9
14 14 H 1.09000 * 104.19079 * 297.34264 * 13 11 10
15 15 C 1.49323 * 101.42570 * 47.38120 * 13 11 10
16 16 C 1.49075 * 106.89274 * 185.87598 * 13 11 10
17 17 H 1.09000 * 114.09392 * 210.66606 * 16 13 11
18 18 C 1.56535 * 102.42706 * 86.44591 * 16 13 11
19 19 C 1.54065 * 105.51478 * 324.55519 * 18 16 13
20 20 C 1.53074 * 120.29135 * 215.60877 * 11 10 9
21 21 H 1.08999 * 113.68592 * 317.33845 * 20 11 10
22 22 C 1.56708 * 102.04909 * 194.20474 * 20 11 10
23 23 N 1.47227 * 105.02963 * 321.14817 * 22 20 11
24 24 C 1.36936 * 122.04840 * 146.09399 * 23 22 20
25 25 H 1.08000 * 120.00079 * 201.54816 * 24 23 22
26 26 C 1.38813 * 119.99968 * 21.54266 * 24 23 22
27 27 N 1.31611 * 120.00015 * 10.56575 * 26 24 23
28 28 Si 1.86797 * 119.99958 * 190.56002 * 26 24 23
29 29 H 1.48498 * 109.46867 * 90.00286 * 28 26 24
30 30 H 1.48504 * 109.47284 * 210.00369 * 28 26 24
31 31 H 1.48497 * 109.47237 * 330.00291 * 28 26 24
32 32 H 1.08999 * 109.47238 * 59.99539 * 1 2 3
33 33 H 1.08996 * 109.47321 * 179.97438 * 1 2 3
34 34 H 1.09002 * 109.47036 * 300.00042 * 1 2 3
35 35 H 1.09002 * 109.47036 * 239.99958 * 2 1 3
36 36 H 1.08997 * 109.47337 * 179.97438 * 3 2 1
37 37 H 1.08999 * 109.47340 * 300.00399 * 3 2 1
38 38 H 1.09001 * 109.46719 * 60.00377 * 3 2 1
39 39 H 1.08995 * 109.47609 * 183.95755 * 5 4 2
40 40 H 1.09006 * 109.46990 * 303.95532 * 5 4 2
41 41 H 1.08999 * 109.47244 * 63.95081 * 5 4 2
42 42 H 1.08998 * 109.47023 * 49.99920 * 6 4 2
43 43 H 1.08997 * 109.47368 * 289.99866 * 6 4 2
44 44 H 1.09005 * 110.29956 * 306.08588 * 10 9 7
45 45 H 1.09005 * 110.29959 * 68.21879 * 10 9 7
46 46 H 1.09000 * 110.90559 * 198.18935 * 15 13 11
47 47 H 1.09000 * 110.90414 * 74.59166 * 15 13 11
48 48 H 1.09001 * 109.64979 * 205.85509 * 18 16 13
49 49 H 1.09004 * 110.91636 * 83.91984 * 18 16 13
50 50 H 1.09004 * 109.41319 * 203.27026 * 19 18 16
51 51 H 1.09001 * 109.35050 * 83.45717 * 19 18 16
52 52 H 1.08993 * 110.30971 * 80.72099 * 22 20 11
53 53 H 1.09000 * 110.30489 * 202.93615 * 22 20 11
54 54 H 0.97003 * 120.00501 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0196 -0.6926 1.1994
5 6 1.4343 -0.1150 2.4166
6 6 1.7528 -2.1350 1.1202
7 6 2.4773 -2.8419 2.2367
8 8 3.1493 -2.2066 3.0213
9 7 2.3825 -4.1806 2.3601
10 6 3.0498 -5.0107 3.4022
11 6 2.7732 -6.4519 3.0030
12 1 3.5035 -6.7936 2.2695
13 6 1.3631 -6.2717 2.3534
14 1 0.7352 -5.9188 3.1715
15 6 1.5934 -5.0905 1.4694
16 6 0.8607 -7.6359 2.0235
17 1 0.2065 -7.6705 1.1522
18 6 0.1796 -8.0770 3.3621
19 6 1.0467 -7.4739 4.4838
20 6 2.5396 -7.5189 4.0754
21 1 3.2253 -7.4486 4.9197
22 6 2.6781 -8.8454 3.2527
23 7 2.0308 -8.5628 1.9609
24 6 2.4787 -9.1106 0.7885
25 1 2.2349 -8.6429 -0.1539
26 6 3.2463 -10.2670 0.8114
27 7 3.3710 -10.9521 1.9282
28 14 4.1021 -10.8508 -0.7430
29 1 5.4579 -10.2495 -0.8172
30 1 4.2178 -12.3312 -0.7182
31 1 3.3110 -10.4360 -1.9293
32 1 -0.3634 0.5139 -0.8899
33 1 -0.3634 -1.0276 -0.0005
34 1 -0.3633 0.5139 0.8900
35 1 1.8933 -0.5139 -0.8900
36 1 3.1300 1.4425 0.0005
37 1 1.6767 1.9563 -0.8899
38 1 1.6767 1.9562 0.8900
39 1 1.8664 -0.5989 3.2925
40 1 1.6467 0.9536 2.4501
41 1 0.3556 -0.2711 2.4104
42 1 2.1023 -2.5170 0.1610
43 1 0.6813 -2.3119 1.2131
44 1 4.1226 -4.8179 3.4096
45 1 2.6209 -4.8035 4.3827
46 1 0.6483 -4.6298 1.1819
47 1 2.1717 -5.3706 0.5889
48 1 0.1772 -9.1648 3.4311
49 1 -0.8388 -7.6936 3.4254
50 1 0.9042 -8.0473 5.3998
51 1 0.7487 -6.4393 4.6540
52 1 3.7296 -9.0968 3.1143
53 1 2.1561 -9.6591 3.7563
54 1 3.9070 -11.7604 1.9441
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001264035738.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:25:52
Heat of formation + Delta-G solvation = 31.638502 kcal
Electronic energy + Delta-G solvation = -31249.322927 eV
Core-core repulsion = 27415.907330 eV
Total energy + Delta-G solvation = -3833.415597 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.95 seconds
Orbital eigenvalues (eV)
-42.49805 -40.67156 -38.81059 -37.25692 -35.04313 -33.03368 -32.53268 -31.73951
-31.55684 -29.36776 -28.55207 -27.95042 -27.12678 -26.13205 -24.66007 -23.54575
-22.20963 -21.86956 -20.69999 -20.17250 -19.08399 -18.35775 -18.16325 -17.35223
-16.92817 -16.75001 -16.59207 -16.03447 -15.91100 -15.90921 -15.34448 -14.76713
-14.70021 -14.50876 -14.28943 -14.16988 -13.95563 -13.83942 -13.52619 -13.15330
-12.97035 -12.96392 -12.85722 -12.83458 -12.59233 -12.44186 -12.42844 -12.34612
-12.23585 -12.22895 -12.05661 -12.03689 -11.90175 -11.77932 -11.60848 -11.21620
-10.78878 -10.63120 -10.55383 -10.41764 -9.66013 -9.20327 -8.66547 -7.79084
-5.17786 1.47365 1.49296 1.56286 1.65762 1.82414 2.53482 2.97737
3.31434 3.38733 3.44420 3.64107 3.87853 3.96694 3.98540 4.09193
4.16264 4.21692 4.28234 4.31370 4.32309 4.37560 4.45764 4.52729
4.54255 4.56663 4.63628 4.70307 4.73410 4.79424 4.85579 4.87322
4.87746 4.96964 5.00658 5.03262 5.06589 5.09996 5.12289 5.16843
5.24207 5.33626 5.33894 5.41126 5.46488 5.51284 5.62832 5.67194
5.74111 5.86983 5.99497 6.17996 6.36012 6.56714 7.20005 7.21196
7.88726 8.47377 9.28674
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.015671 B = 0.003038 C = 0.002791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1786.351862 B = 9215.331752 C =10029.488253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.073 3.927
3 C -0.140 4.140
4 N -0.539 5.539
5 C 0.021 3.979
6 C 0.048 3.952
7 C 0.524 3.476
8 O -0.571 6.571
9 N -0.623 5.623
10 C 0.127 3.873
11 C -0.080 4.080
12 H 0.058 0.942
13 C -0.134 4.134
14 H 0.086 0.914
15 C 0.131 3.869
16 C 0.181 3.819
17 H 0.089 0.911
18 C -0.126 4.126
19 C -0.103 4.103
20 C -0.103 4.103
21 H 0.088 0.912
22 C 0.203 3.797
23 N -0.607 5.607
24 C -0.239 4.239
25 H 0.074 0.926
26 C -0.058 4.058
27 N -0.944 5.944
28 Si 0.960 3.040
29 H -0.294 1.294
30 H -0.301 1.301
31 H -0.267 1.267
32 H 0.074 0.926
33 H 0.057 0.943
34 H 0.058 0.942
35 H 0.086 0.914
36 H 0.050 0.950
37 H 0.076 0.924
38 H 0.055 0.945
39 H 0.058 0.942
40 H 0.075 0.925
41 H 0.037 0.963
42 H 0.115 0.885
43 H 0.084 0.916
44 H 0.051 0.949
45 H 0.069 0.931
46 H 0.108 0.892
47 H 0.065 0.935
48 H 0.041 0.959
49 H 0.085 0.915
50 H 0.060 0.940
51 H 0.076 0.924
52 H 0.026 0.974
53 H 0.001 0.999
54 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.696 19.965 -1.225 22.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.035 4.035
3 C -0.198 4.198
4 N -0.264 5.264
5 C -0.127 4.127
6 C -0.083 4.083
7 C 0.313 3.687
8 O -0.451 6.451
9 N -0.358 5.358
10 C 0.005 3.995
11 C -0.100 4.100
12 H 0.076 0.924
13 C -0.155 4.155
14 H 0.104 0.896
15 C 0.010 3.990
16 C 0.075 3.925
17 H 0.107 0.893
18 C -0.164 4.164
19 C -0.140 4.140
20 C -0.123 4.123
21 H 0.107 0.893
22 C 0.077 3.923
23 N -0.331 5.331
24 C -0.369 4.369
25 H 0.091 0.909
26 C -0.252 4.252
27 N -0.592 5.592
28 Si 0.790 3.210
29 H -0.222 1.222
30 H -0.228 1.228
31 H -0.191 1.191
32 H 0.093 0.907
33 H 0.076 0.924
34 H 0.077 0.923
35 H 0.105 0.895
36 H 0.069 0.931
37 H 0.095 0.905
38 H 0.074 0.926
39 H 0.076 0.924
40 H 0.094 0.906
41 H 0.055 0.945
42 H 0.133 0.867
43 H 0.102 0.898
44 H 0.069 0.931
45 H 0.088 0.912
46 H 0.126 0.874
47 H 0.083 0.917
48 H 0.060 0.940
49 H 0.104 0.896
50 H 0.079 0.921
51 H 0.095 0.905
52 H 0.045 0.955
53 H 0.019 0.981
54 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -8.749 20.312 -0.811 22.131
hybrid contribution 0.321 -1.346 -0.562 1.494
sum -8.428 18.966 -1.373 20.799
Atomic orbital electron populations
1.22449 0.96261 1.02363 1.03104 1.21850 0.93717 0.95875 0.92027
1.21813 1.01209 0.94371 1.02364 1.61852 1.59875 1.01108 1.03525
1.22489 0.96958 1.00694 0.92567 1.21941 0.99490 0.89229 0.97613
1.20789 0.81295 0.80325 0.86257 1.90636 1.42921 1.65472 1.46046
1.49848 1.49299 1.05509 1.31178 1.21549 0.96537 0.90043 0.91379
1.21969 0.98220 0.91584 0.98209 0.92386 1.22019 0.97738 0.95700
1.00004 0.89575 1.21333 0.96106 0.89172 0.92437 1.20929 0.87968
0.87065 0.96521 0.89321 1.22989 0.98722 0.99748 0.94968 1.22074
0.93366 1.00749 0.97830 1.22752 0.97313 0.95617 0.96576 0.89345
1.21221 0.95225 0.91195 0.84617 1.45257 1.31652 1.52884 1.03328
1.19505 1.27044 1.03485 0.86878 0.90867 1.25612 1.03502 0.96871
0.99236 1.70142 1.44253 1.17558 1.27254 0.85353 0.78618 0.76458
0.80573 1.22160 1.22821 1.19124 0.90661 0.92425 0.92287 0.89536
0.93053 0.90529 0.92613 0.92372 0.90646 0.94504 0.86735 0.89805
0.93070 0.91233 0.87405 0.91710 0.94045 0.89634 0.92115 0.90525
0.95518 0.98064 0.94689
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.16 8.44 71.98 0.61 -1.56 16
2 C 0.07 1.10 2.92 44.91 0.13 1.23 16
3 C -0.14 -1.93 9.12 71.98 0.66 -1.28 16
4 N -0.54 -11.35 4.45 -901.65 -4.01 -15.36 16
5 C 0.02 0.43 8.33 127.69 1.06 1.49 16
6 C 0.05 0.97 4.09 85.56 0.35 1.32 16
7 C 0.52 14.85 7.60 87.66 0.67 15.52 16
8 O -0.57 -20.60 14.66 -3.03 -0.04 -20.64 16
9 N -0.62 -17.16 3.42 -814.99 -2.79 -19.95 16
10 C 0.13 3.86 6.58 85.59 0.56 4.42 16
11 C -0.08 -2.67 2.40 -9.92 -0.02 -2.69 16
12 H 0.06 2.42 7.29 -2.39 -0.02 2.40 16
13 C -0.13 -3.80 2.37 -12.07 -0.03 -3.83 16
14 H 0.09 2.21 4.72 -2.39 -0.01 2.20 16
15 C 0.13 3.15 6.59 84.56 0.56 3.71 16
16 C 0.18 6.20 4.59 44.41 0.20 6.40 16
17 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16
18 C -0.13 -3.91 5.59 32.19 0.18 -3.73 16
19 C -0.10 -2.96 5.30 31.58 0.17 -2.79 16
20 C -0.10 -3.52 4.28 -8.84 -0.04 -3.56 16
21 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16
22 C 0.20 9.32 3.91 87.54 0.34 9.66 16
23 N -0.61 -27.63 2.01 -661.85 -1.33 -28.96 16
24 C -0.24 -12.34 9.98 84.03 0.84 -11.50 16
25 H 0.07 3.63 7.85 -2.91 -0.02 3.61 16
26 C -0.06 -3.17 5.21 84.86 0.44 -2.73 16
27 N -0.94 -55.12 10.83 21.65 0.23 -54.88 16
28 Si 0.96 44.62 29.57 68.60 2.03 46.65 16
29 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16
30 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16
31 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
33 H 0.06 0.67 6.91 -2.39 -0.02 0.65 16
34 H 0.06 0.73 6.42 -2.39 -0.02 0.71 16
35 H 0.09 1.24 7.93 -2.39 -0.02 1.22 16
36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
38 H 0.05 0.77 6.47 -2.39 -0.02 0.75 16
39 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16
40 H 0.07 1.40 6.30 -2.38 -0.02 1.39 16
41 H 0.04 0.64 6.46 -2.39 -0.02 0.63 16
42 H 0.11 2.04 7.93 -2.39 -0.02 2.02 16
43 H 0.08 1.35 6.85 -2.39 -0.02 1.33 16
44 H 0.05 1.69 8.14 -2.38 -0.02 1.68 16
45 H 0.07 2.00 8.14 -2.38 -0.02 1.99 16
46 H 0.11 1.84 7.66 -2.39 -0.02 1.83 16
47 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16
48 H 0.04 1.58 7.17 -2.39 -0.02 1.56 16
49 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16
50 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
51 H 0.08 1.88 6.43 -2.39 -0.02 1.86 16
52 H 0.03 1.43 6.87 -2.39 -0.02 1.41 16
53 H 0.00 0.07 7.10 -2.39 -0.02 0.05 16
54 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16
Total: -1.00 -66.80 389.53 1.64 -65.16
By element:
Atomic # 1 Polarization: 17.03 SS G_CDS: 0.87 Total: 17.91 kcal
Atomic # 6 Polarization: 3.40 SS G_CDS: 6.68 Total: 10.08 kcal
Atomic # 7 Polarization: -111.26 SS G_CDS: -7.90 Total: -119.16 kcal
Atomic # 8 Polarization: -20.60 SS G_CDS: -0.04 Total: -20.64 kcal
Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -66.80 1.64 -65.16 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001264035738.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.798 kcal
(2) G-P(sol) polarization free energy of solvation -66.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.999 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.159 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.95 seconds