Wall clock time and date at job start Tue Mar 31 2020 19:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00524 * 2 1 3 5 5 C 1.46898 * 111.00052 * 176.04736 * 4 2 1 6 6 C 1.46898 * 110.99498 * 299.99832 * 4 2 1 7 7 C 1.50706 * 109.47237 * 170.00051 * 6 4 2 8 8 O 1.21283 * 119.99395 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00459 * 179.97438 * 7 6 4 10 10 C 1.48165 * 127.83532 * 359.67829 * 9 7 6 11 11 C 1.54721 * 104.37802 * 140.32761 * 10 9 7 12 12 H 1.08992 * 111.08110 * 264.46790 * 11 10 9 13 13 C 1.54162 * 104.97350 * 24.41111 * 11 10 9 14 14 H 1.08997 * 110.87761 * 239.67171 * 13 11 10 15 15 C 1.48137 * 127.84176 * 179.97438 * 9 7 6 16 16 C 1.53030 * 109.71912 * 116.35059 * 13 11 10 17 17 H 1.09003 * 109.64370 * 179.86504 * 16 13 11 18 18 C 1.53070 * 109.15971 * 300.62266 * 16 13 11 19 19 C 1.52930 * 109.51860 * 60.18089 * 18 16 13 20 20 C 1.53211 * 109.39418 * 141.76032 * 11 10 9 21 21 H 1.08998 * 110.51556 * 67.82390 * 20 11 10 22 22 N 1.47651 * 108.07702 * 188.88546 * 20 11 10 23 23 C 1.36929 * 122.04286 * 238.58873 * 22 20 11 24 24 H 1.08003 * 120.00314 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00245 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99807 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00014 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47074 * 60.00040 * 27 25 23 29 29 H 1.48506 * 109.46646 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46950 * 300.00002 * 27 25 23 31 31 C 1.47582 * 115.91581 * 58.61776 * 22 20 11 32 32 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 35 35 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 36 36 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 37 37 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 39 39 H 1.08994 * 109.47157 * 59.99647 * 5 4 2 40 40 H 1.09005 * 109.46959 * 179.97438 * 5 4 2 41 41 H 1.09004 * 109.46870 * 299.99082 * 5 4 2 42 42 H 1.08996 * 109.47382 * 289.99610 * 6 4 2 43 43 H 1.08999 * 109.47770 * 50.00048 * 6 4 2 44 44 H 1.08998 * 110.42090 * 259.13815 * 10 9 7 45 45 H 1.09002 * 110.42096 * 21.60447 * 10 9 7 46 46 H 1.09004 * 110.40133 * 338.20844 * 15 9 7 47 47 H 1.08998 * 110.40355 * 100.61606 * 15 9 7 48 48 H 1.09011 * 109.37733 * 179.43958 * 18 16 13 49 49 H 1.09001 * 109.38165 * 299.21735 * 18 16 13 50 50 H 1.08994 * 108.46141 * 239.83510 * 19 18 16 51 51 H 1.09008 * 109.92973 * 120.23122 * 19 18 16 52 52 H 0.97002 * 119.99653 * 180.02562 * 26 25 23 53 53 H 1.08998 * 109.99451 * 119.60045 * 31 22 20 54 54 H 1.09000 * 109.99083 * 240.88048 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.4851 -0.6306 -1.2816 6 6 1.5487 -2.0834 -1.2335 7 6 1.8580 -2.6858 -2.5798 8 8 2.4154 -2.0215 -3.4277 9 7 1.5151 -3.9626 -2.8417 10 6 0.8406 -4.9257 -1.9402 11 6 -0.1493 -5.6822 -2.8576 12 1 -1.1438 -5.2384 -2.8116 13 6 0.4447 -5.5558 -4.2745 14 1 -0.2524 -5.0525 -4.9445 15 6 1.7326 -4.7234 -4.0940 16 6 0.8197 -6.9422 -4.8027 17 1 1.2373 -6.8516 -5.8055 18 6 1.8441 -7.5787 -3.8601 19 6 1.2382 -7.7129 -2.4624 20 6 -0.1916 -7.1591 -2.4522 21 1 -0.6470 -7.2723 -1.4684 22 7 -0.9703 -7.8916 -3.4706 23 6 -2.0964 -8.6023 -3.1516 24 1 -2.4403 -8.6386 -2.1284 25 6 -2.7961 -9.2760 -4.1432 26 7 -2.3768 -9.2322 -5.3901 27 14 -4.3328 -10.2449 -3.7080 28 1 -5.3421 -9.3318 -3.1142 29 1 -4.8896 -10.8676 -4.9360 30 1 -3.9880 -11.3061 -2.7282 31 6 -0.4604 -7.8116 -4.8532 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6766 1.9564 -0.8899 39 1 3.9186 -1.1063 -0.4020 40 1 3.8210 -1.1512 -2.1785 41 1 3.8029 0.4111 -1.3253 42 1 2.0519 -2.6565 -0.4548 43 1 0.4723 -2.1069 -1.0636 44 1 1.5661 -5.6156 -1.5092 45 1 0.3028 -4.3972 -1.1529 46 1 1.8654 -4.0420 -4.9344 47 1 2.5977 -5.3790 -3.9950 48 1 2.1064 -8.5709 -4.2278 49 1 2.7391 -6.9574 -3.8258 50 1 1.8524 -7.1448 -1.7639 51 1 1.2235 -8.7609 -2.1629 52 1 -2.8660 -9.7027 -6.0831 53 1 -0.2160 -8.8090 -5.2186 54 1 -1.2072 -7.3508 -5.4997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264035739.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:57 Heat of formation + Delta-G solvation = 1.020618 kcal Electronic energy + Delta-G solvation = -31182.739292 eV Core-core repulsion = 27347.996004 eV Total energy + Delta-G solvation = -3834.743288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.12112 -40.51227 -38.59134 -37.07786 -34.98887 -33.29806 -32.97895 -31.73073 -31.63723 -30.05584 -28.82195 -27.29493 -26.99110 -25.77271 -24.58602 -23.64407 -22.44584 -22.16244 -20.98114 -20.27523 -19.11648 -18.25148 -17.76087 -17.28691 -17.11380 -16.73288 -16.53855 -16.15782 -15.95667 -15.76431 -15.49585 -15.08705 -14.67854 -14.27470 -14.12959 -14.11650 -13.75563 -13.71292 -13.43501 -13.28077 -13.12253 -12.99194 -12.87290 -12.83119 -12.78941 -12.69728 -12.52323 -12.37264 -12.31583 -12.15805 -12.04565 -11.94380 -11.86274 -11.72485 -11.54275 -11.13367 -10.85602 -10.70877 -10.67516 -10.46941 -9.63932 -9.23931 -8.79767 -7.71542 -5.09490 1.47875 1.49670 1.55712 1.64825 1.89245 2.53938 2.96467 3.39413 3.46283 3.55077 3.75264 3.87589 3.89492 3.96940 4.07510 4.15527 4.24730 4.25992 4.28919 4.33187 4.35078 4.44427 4.47654 4.55817 4.60471 4.61251 4.64591 4.70355 4.80043 4.83403 4.88917 4.93393 4.94318 4.95981 5.03210 5.04392 5.09508 5.13334 5.20609 5.28586 5.33226 5.41244 5.42175 5.48213 5.55545 5.58629 5.66100 5.81648 5.93664 5.99290 6.17344 6.32439 6.63885 7.21583 7.21977 7.93939 8.44141 9.31167 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.002816 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.899246 B = 9941.823584 C =10740.638423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.144 4.144 4 N -0.542 5.542 5 C 0.022 3.978 6 C 0.042 3.958 7 C 0.529 3.471 8 O -0.570 6.570 9 N -0.621 5.621 10 C 0.108 3.892 11 C -0.101 4.101 12 H 0.061 0.939 13 C -0.076 4.076 14 H 0.052 0.948 15 C 0.113 3.887 16 C -0.102 4.102 17 H 0.071 0.929 18 C -0.100 4.100 19 C -0.126 4.126 20 C 0.174 3.826 21 H 0.075 0.925 22 N -0.616 5.616 23 C -0.237 4.237 24 H 0.083 0.917 25 C -0.070 4.070 26 N -0.953 5.953 27 Si 0.969 3.031 28 H -0.279 1.279 29 H -0.302 1.302 30 H -0.278 1.278 31 C 0.215 3.785 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.032 0.968 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.045 0.955 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.047 0.953 52 H 0.241 0.759 53 H 0.011 0.989 54 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.345 15.266 13.927 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 C -0.201 4.201 4 N -0.268 5.268 5 C -0.126 4.126 6 C -0.088 4.088 7 C 0.319 3.681 8 O -0.450 6.450 9 N -0.355 5.355 10 C -0.015 4.015 11 C -0.123 4.123 12 H 0.079 0.921 13 C -0.096 4.096 14 H 0.071 0.929 15 C -0.010 4.010 16 C -0.122 4.122 17 H 0.089 0.911 18 C -0.138 4.138 19 C -0.165 4.165 20 C 0.067 3.933 21 H 0.093 0.907 22 N -0.340 5.340 23 C -0.367 4.367 24 H 0.101 0.899 25 C -0.262 4.262 26 N -0.603 5.603 27 Si 0.798 3.202 28 H -0.206 1.206 29 H -0.229 1.229 30 H -0.204 1.204 31 C 0.090 3.910 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.137 0.863 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.064 0.936 49 H 0.103 0.897 50 H 0.109 0.891 51 H 0.065 0.935 52 H 0.051 0.949 53 H 0.029 0.971 54 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 11.371 15.890 12.996 23.467 hybrid contribution -1.061 -1.391 -0.206 1.762 sum 10.310 14.498 12.790 21.911 Atomic orbital electron populations 1.21940 0.93792 1.02311 1.02566 1.21755 0.96163 0.95481 0.89822 1.21885 1.01249 0.94524 1.02482 1.61680 1.11521 1.12965 1.40595 1.22490 0.86546 1.02834 1.00715 1.22015 1.03809 0.90021 0.92970 1.20699 0.77718 0.79281 0.90373 1.90646 1.44089 1.60478 1.49749 1.49097 1.59070 1.10832 1.16456 1.22901 0.95107 0.90931 0.92513 1.22578 0.98082 0.97164 0.94441 0.92086 1.21808 0.95896 0.94909 0.96972 0.92934 1.22525 0.97824 0.93550 0.87088 1.21862 0.96907 0.94414 0.98971 0.91100 1.21455 0.97223 0.99862 0.95210 1.22071 0.96598 1.00705 0.97107 1.20790 0.91451 0.88988 0.92038 0.90658 1.44849 1.27886 1.57259 1.03999 1.19656 1.01169 1.21992 0.93905 0.89940 1.25556 1.02338 1.02657 0.95667 1.70269 1.41475 1.48254 1.00336 0.85288 0.80012 0.78704 0.76157 1.20573 1.22852 1.20426 1.20887 0.90295 0.94949 0.84829 0.90365 0.92248 0.93001 0.93043 0.90486 0.92239 0.92900 0.94926 0.92114 0.90445 0.89841 0.86347 0.87980 0.88233 0.92001 0.88865 0.93572 0.89717 0.89068 0.93453 0.94934 0.97097 0.97612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.99 71.98 0.65 -1.39 16 2 C 0.08 1.11 2.68 44.91 0.12 1.23 16 3 C -0.14 -1.88 8.83 71.98 0.64 -1.25 16 4 N -0.54 -11.03 4.37 -901.61 -3.94 -14.97 16 5 C 0.02 0.43 8.75 127.69 1.12 1.55 16 6 C 0.04 0.81 4.24 85.56 0.36 1.17 16 7 C 0.53 14.12 7.61 87.66 0.67 14.79 16 8 O -0.57 -19.74 14.60 -3.04 -0.04 -19.78 16 9 N -0.62 -15.51 3.31 -807.24 -2.67 -18.18 16 10 C 0.11 2.26 6.24 86.65 0.54 2.80 16 11 C -0.10 -3.05 3.31 -9.74 -0.03 -3.08 16 12 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.08 -2.45 3.12 -9.91 -0.03 -2.49 16 14 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 15 C 0.11 3.08 6.34 86.54 0.55 3.63 16 16 C -0.10 -3.61 2.88 -10.14 -0.03 -3.64 16 17 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 18 C -0.10 -2.96 5.38 30.59 0.16 -2.80 16 19 C -0.13 -3.64 5.49 30.68 0.17 -3.48 16 20 C 0.17 6.00 3.21 44.95 0.14 6.15 16 21 H 0.08 2.49 7.99 -2.39 -0.02 2.47 16 22 N -0.62 -29.09 2.87 -668.02 -1.92 -31.01 16 23 C -0.24 -12.59 9.99 84.03 0.84 -11.75 16 24 H 0.08 4.12 7.79 -2.91 -0.02 4.10 16 25 C -0.07 -3.90 5.47 84.86 0.46 -3.44 16 26 N -0.95 -56.84 9.76 21.65 0.21 -56.63 16 27 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 29 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 30 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 31 C 0.22 10.38 4.45 86.80 0.39 10.76 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.78 6.20 -2.39 -0.01 0.76 16 34 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.75 6.34 -2.39 -0.02 0.73 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 1.55 5.83 -2.38 -0.01 1.54 16 41 H 0.08 1.39 6.23 -2.39 -0.01 1.37 16 42 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 43 H 0.12 2.00 5.65 -2.39 -0.01 1.98 16 44 H 0.10 1.80 5.28 -2.39 -0.01 1.78 16 45 H 0.10 1.59 7.31 -2.39 -0.02 1.57 16 46 H 0.06 1.87 7.88 -2.38 -0.02 1.85 16 47 H 0.09 2.27 5.30 -2.39 -0.01 2.26 16 48 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.08 2.00 5.78 -2.39 -0.01 1.98 16 50 H 0.09 1.92 5.70 -2.39 -0.01 1.91 16 51 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 52 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 53 H 0.01 0.60 7.21 -2.39 -0.02 0.59 16 54 H 0.01 0.32 7.24 -2.39 -0.02 0.30 16 Total: -1.00 -69.76 386.48 1.25 -68.51 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.88 Total: 15.98 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.71 Total: 8.78 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -8.32 Total: -120.79 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.04 Total: -19.78 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.76 1.25 -68.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264035739.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.528 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds