Wall clock time and date at job start Tue Mar 31 2020 18:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.46154 * 2 1 4 4 C 1.36938 * 119.99954 * 60.02185 * 3 2 1 5 5 H 1.07999 * 119.99551 * 0.02562 * 4 3 2 6 6 C 1.38813 * 119.99731 * 180.02562 * 4 3 2 7 7 N 1.31617 * 119.99741 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00329 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.46888 * 269.99867 * 8 6 4 10 10 H 1.48500 * 109.46850 * 29.99902 * 8 6 4 11 11 H 1.48500 * 109.47218 * 149.99779 * 8 6 4 12 12 C 1.53042 * 109.45410 * 119.96538 * 2 1 3 13 13 C 1.53188 * 109.31790 * 181.38145 * 12 2 1 14 14 N 1.46927 * 108.77291 * 305.36276 * 13 12 2 15 15 C 1.34774 * 120.63373 * 233.58386 * 14 13 12 16 16 O 1.21285 * 120.00094 * 174.70426 * 15 14 13 17 17 C 1.51489 * 119.99817 * 354.71375 * 15 14 13 18 18 C 1.52501 * 108.85252 * 306.68399 * 17 15 14 19 19 C 1.52154 * 112.51589 * 188.49225 * 18 17 15 20 20 C 1.52278 * 112.65812 * 45.31284 * 19 18 17 21 21 N 1.45829 * 112.45895 * 313.40902 * 20 19 18 22 22 C 1.45845 * 114.02796 * 289.01763 * 21 20 19 23 23 C 1.52275 * 112.21684 * 70.23968 * 22 21 20 24 24 C 1.52150 * 112.57016 * 47.16411 * 23 22 21 25 25 C 1.46505 * 112.07308 * 57.48536 * 21 20 19 26 26 C 1.46937 * 118.73831 * 53.61055 * 14 13 12 27 27 C 1.53042 * 109.46264 * 240.02794 * 2 1 3 28 28 H 1.09001 * 109.47563 * 60.00055 * 1 2 3 29 29 H 1.08999 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46975 * 299.99934 * 1 2 3 31 31 H 0.97004 * 119.99745 * 240.03453 * 3 2 1 32 32 H 0.96999 * 120.00103 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.49043 * 301.33290 * 12 2 1 34 34 H 1.08998 * 109.49675 * 61.42223 * 12 2 1 35 35 H 1.09000 * 109.58852 * 185.58042 * 13 12 2 36 36 H 1.09004 * 109.70394 * 65.21949 * 13 12 2 37 37 H 1.09694 * 109.04549 * 309.87500 * 18 17 15 38 38 H 1.09679 * 109.07815 * 67.06031 * 18 17 15 39 39 H 1.08682 * 110.93587 * 280.36266 * 19 18 17 40 40 H 1.10586 * 107.97565 * 164.29808 * 19 18 17 41 41 H 1.09678 * 109.03722 * 192.14019 * 20 19 18 42 42 H 1.09625 * 109.14130 * 74.86749 * 20 19 18 43 43 H 1.09673 * 109.20067 * 191.30685 * 22 21 20 44 44 H 1.09575 * 109.35930 * 308.88061 * 22 21 20 45 45 H 1.10545 * 107.92711 * 166.33640 * 23 22 21 46 46 H 1.08697 * 110.77170 * 282.32506 * 23 22 21 47 47 H 1.09713 * 109.20791 * 193.44563 * 24 23 22 48 48 H 1.09709 * 109.21867 * 76.15691 * 24 23 22 49 49 H 1.08869 * 109.93233 * 175.82470 * 25 21 20 50 50 H 1.08896 * 109.89508 * 54.80761 * 25 21 20 51 51 H 1.08999 * 109.58591 * 186.60482 * 26 14 13 52 52 H 1.08995 * 109.70454 * 66.24515 * 26 14 13 53 53 H 1.08997 * 109.49366 * 298.57861 * 27 2 1 54 54 H 1.09000 * 109.49904 * 58.64204 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6874 2.2243 1.0273 5 1 1.0672 1.8707 1.8376 6 6 2.1495 3.5333 1.0270 7 7 1.8322 4.3434 2.0146 8 14 3.2217 4.1451 -0.3750 9 1 4.6499 3.9035 -0.0477 10 1 2.8695 3.4180 -1.6211 11 1 2.9979 5.6000 -0.5708 12 6 2.0396 -0.7208 1.2502 13 6 3.5711 -0.6888 1.2645 14 7 4.0676 -1.2493 0.0004 15 6 4.9617 -2.2578 0.0004 16 8 5.2913 -2.7760 -1.0454 17 6 5.5547 -2.7441 1.3068 18 6 6.1444 -1.5527 2.0541 19 6 6.9435 -1.9709 3.2795 20 6 7.8792 -3.1391 2.9990 21 7 7.2229 -4.2148 2.2650 22 6 6.2454 -4.9594 3.0506 23 6 5.0015 -4.1347 3.3533 24 6 4.4599 -3.4218 2.1232 25 6 6.6640 -3.7519 0.9924 26 6 3.5713 -0.6889 -1.2641 27 6 2.0399 -0.7209 -1.2500 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5753 1.6988 -0.7278 32 1 2.1547 5.2582 2.0142 33 1 1.6569 -0.2206 2.1398 34 1 1.6974 -1.7555 1.2384 35 1 3.9412 -1.2848 2.0987 36 1 3.9163 0.3398 1.3688 37 1 6.7944 -0.9892 1.3734 38 1 5.3310 -0.8849 2.3629 39 1 6.2850 -2.1945 4.1148 40 1 7.5615 -1.1096 3.5942 41 1 8.2580 -3.5307 3.9509 42 1 8.7398 -2.7799 2.4226 43 1 5.9521 -5.8615 2.5002 44 1 6.7042 -5.2792 3.9928 45 1 4.2191 -4.8224 3.7232 46 1 5.1930 -3.4294 4.1579 47 1 3.7277 -2.6672 2.4365 48 1 3.9355 -4.1461 1.4876 49 1 6.2489 -4.5939 0.4411 50 1 7.4402 -3.2691 0.4005 51 1 3.9416 -1.2850 -2.0982 52 1 3.9144 0.3402 -1.3697 53 1 1.6976 -1.7557 -1.2382 54 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274345051.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:53 Heat of formation + Delta-G solvation = -22.753507 kcal Electronic energy + Delta-G solvation = -32605.756726 eV Core-core repulsion = 28769.982515 eV Total energy + Delta-G solvation = -3835.774211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55642 -40.51917 -39.11440 -36.33156 -34.85324 -34.05906 -33.95902 -31.96903 -31.76868 -31.56692 -29.21389 -27.40248 -25.87296 -25.34009 -24.84552 -23.98734 -23.16865 -22.44001 -21.04340 -19.79313 -19.65708 -19.42055 -17.95650 -17.26895 -16.81838 -16.52768 -16.35016 -16.02943 -15.99311 -15.45166 -15.34632 -15.20352 -14.97327 -14.85846 -14.44893 -14.30312 -14.07360 -14.06021 -13.71015 -13.59341 -13.45822 -13.40387 -13.00841 -12.75886 -12.69923 -12.60633 -12.49619 -12.43856 -12.39410 -12.18457 -11.99755 -11.88314 -11.82889 -11.69162 -11.65261 -11.39356 -11.15770 -10.88444 -10.76027 -10.54975 -9.67930 -9.20781 -9.00688 -7.95376 -5.25862 1.36825 1.37286 1.44440 1.55869 1.98213 2.50656 2.99934 3.32490 3.36875 3.53055 3.58210 3.60404 3.82686 3.86664 3.96245 4.02125 4.06187 4.10904 4.18544 4.22168 4.23247 4.32507 4.40406 4.47780 4.51687 4.57419 4.60480 4.66168 4.75148 4.79230 4.83625 4.93205 4.94231 4.96761 4.98722 4.99470 5.04108 5.06730 5.08338 5.10391 5.12694 5.19915 5.26100 5.30841 5.32812 5.46019 5.54043 5.63153 5.88446 6.15509 6.29282 6.38854 6.42956 7.10582 7.15227 7.92346 8.10094 9.26157 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.004040 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.679825 B = 6928.736003 C = 7383.139423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.194 3.806 3 N -0.743 5.743 4 C -0.197 4.197 5 H 0.068 0.932 6 C -0.059 4.059 7 N -0.984 5.984 8 Si 0.933 3.067 9 H -0.287 1.287 10 H -0.257 1.257 11 H -0.304 1.304 12 C -0.129 4.129 13 C 0.104 3.896 14 N -0.597 5.597 15 C 0.520 3.480 16 O -0.582 6.582 17 C -0.093 4.093 18 C -0.120 4.120 19 C -0.146 4.146 20 C 0.066 3.934 21 N -0.550 5.550 22 C 0.064 3.936 23 C -0.147 4.147 24 C -0.109 4.109 25 C 0.100 3.900 26 C 0.112 3.888 27 C -0.121 4.121 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.360 0.640 32 H 0.253 0.747 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.086 0.914 52 H 0.053 0.947 53 H 0.085 0.915 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 -19.842 2.301 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.105 3.895 3 N -0.386 5.386 4 C -0.329 4.329 5 H 0.086 0.914 6 C -0.250 4.250 7 N -0.636 5.636 8 Si 0.763 3.237 9 H -0.214 1.214 10 H -0.182 1.182 11 H -0.232 1.232 12 C -0.169 4.169 13 C -0.018 4.018 14 N -0.328 5.328 15 C 0.309 3.691 16 O -0.462 6.462 17 C -0.098 4.098 18 C -0.157 4.157 19 C -0.185 4.185 20 C -0.062 4.062 21 N -0.270 5.270 22 C -0.064 4.064 23 C -0.186 4.186 24 C -0.146 4.146 25 C -0.029 4.029 26 C -0.011 4.011 27 C -0.160 4.160 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.194 0.806 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.104 0.896 52 H 0.071 0.929 53 H 0.104 0.896 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.294 -20.370 1.838 22.070 hybrid contribution -0.250 2.179 -0.776 2.327 sum 8.044 -18.190 1.062 19.918 Atomic orbital electron populations 1.22110 0.96267 1.00889 1.01035 1.19806 0.92852 0.83202 0.93671 1.42940 1.61477 1.08950 1.25258 1.18892 1.23273 0.91310 0.99387 0.91382 1.25211 1.03009 0.97014 0.99773 1.69837 1.52450 1.06570 1.34697 0.85733 0.79378 0.77062 0.81500 1.21396 1.18189 1.23186 1.22218 0.94822 1.00240 0.99585 1.22295 0.94878 0.99019 0.85596 1.48124 1.42381 1.34498 1.07786 1.21276 0.78012 0.78476 0.91352 1.90625 1.62575 1.58041 1.34963 1.21190 0.98135 0.98007 0.92433 1.21725 1.00619 0.95797 0.97596 1.21964 0.99542 1.00160 0.96868 1.21834 0.95820 0.89355 0.99207 1.60259 1.33451 1.27843 1.05434 1.21874 0.90166 0.95799 0.98535 1.21962 0.99547 1.00488 0.96630 1.21534 0.96041 0.99982 0.97047 1.21586 0.93908 0.96002 0.91380 1.21514 0.94815 0.98051 0.86706 1.22045 0.94147 1.01556 0.98225 0.93562 0.91215 0.94483 0.80640 0.93845 0.91929 0.90505 0.86460 0.92765 0.93423 0.90265 0.90096 0.91206 0.88939 0.91443 0.90919 0.89021 0.90180 0.90550 0.90338 0.92146 0.90867 0.91841 0.89577 0.92878 0.89598 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 8.44 71.98 0.61 -3.99 16 2 C 0.19 6.39 0.74 3.63 0.00 6.39 16 3 N -0.74 -30.97 3.94 -303.22 -1.20 -32.16 16 4 C -0.20 -10.14 9.16 84.03 0.77 -9.37 16 5 H 0.07 3.81 6.93 -2.91 -0.02 3.79 16 6 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 7 N -0.98 -60.62 13.97 21.65 0.30 -60.32 16 8 Si 0.93 44.52 27.73 68.60 1.90 46.43 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.26 -11.18 6.52 99.48 0.65 -10.53 16 11 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 12 C -0.13 -3.87 4.70 30.67 0.14 -3.73 16 13 C 0.10 3.04 3.91 86.36 0.34 3.38 16 14 N -0.60 -17.67 2.96 -817.82 -2.42 -20.09 16 15 C 0.52 15.47 6.35 87.91 0.56 16.03 16 16 O -0.58 -20.68 15.34 -3.05 -0.05 -20.73 16 17 C -0.09 -2.14 0.43 -52.98 -0.02 -2.17 16 18 C -0.12 -2.70 4.22 30.15 0.13 -2.57 16 19 C -0.15 -2.51 5.12 30.08 0.15 -2.36 16 20 C 0.07 1.06 5.77 86.27 0.50 1.56 16 21 N -0.55 -10.10 4.79 -902.22 -4.32 -14.42 16 22 C 0.06 0.93 5.77 86.26 0.50 1.42 16 23 C -0.15 -2.12 5.13 30.07 0.15 -1.96 16 24 C -0.11 -2.09 4.39 30.13 0.13 -1.95 16 25 C 0.10 2.32 4.22 86.42 0.36 2.68 16 26 C 0.11 3.40 6.17 86.36 0.53 3.93 16 27 C -0.12 -3.40 4.96 30.67 0.15 -3.25 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.35 7.27 -2.39 -0.02 1.34 16 31 H 0.36 15.14 4.33 -92.71 -0.40 14.74 16 32 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.06 2.13 7.31 -2.39 -0.02 2.12 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.12 2.90 2.30 -2.39 -0.01 2.90 16 36 H 0.05 1.96 7.69 -2.38 -0.02 1.94 16 37 H 0.05 1.22 8.14 -2.02 -0.02 1.20 16 38 H 0.08 1.91 4.57 -2.03 -0.01 1.90 16 39 H 0.08 1.24 5.70 -2.55 -0.01 1.22 16 40 H 0.07 1.15 8.27 -1.53 -0.01 1.14 16 41 H 0.09 1.15 8.11 -2.03 -0.02 1.13 16 42 H 0.07 1.15 8.19 -2.05 -0.02 1.13 16 43 H 0.07 1.06 8.20 -2.03 -0.02 1.04 16 44 H 0.09 1.02 8.11 -2.08 -0.02 1.01 16 45 H 0.08 0.94 8.27 -1.56 -0.01 0.93 16 46 H 0.08 1.04 5.68 -2.55 -0.01 1.02 16 47 H 0.08 1.54 5.17 -2.01 -0.01 1.53 16 48 H 0.06 1.23 8.14 -2.01 -0.02 1.22 16 49 H 0.07 1.83 7.98 -2.46 -0.02 1.82 16 50 H 0.06 1.66 8.13 -2.44 -0.02 1.64 16 51 H 0.09 2.62 7.00 -2.39 -0.02 2.61 16 52 H 0.05 1.75 6.94 -2.39 -0.02 1.73 16 53 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 54 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -65.20 375.88 0.17 -65.03 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.47 Total: 35.07 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.48 Total: 1.20 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -7.63 Total: -126.99 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.43 kcal Total: -65.20 0.17 -65.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274345051.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.272 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds