Wall clock time and date at job start Tue Mar 31 2020 18:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.45126 * 2 1 4 4 C 1.36939 * 119.99691 * 60.03324 * 3 2 1 5 5 H 1.08003 * 119.99869 * 0.02562 * 4 3 2 6 6 C 1.38806 * 120.00342 * 180.02562 * 4 3 2 7 7 N 1.31617 * 120.00346 * 180.02562 * 6 4 3 8 8 Si 1.86808 * 119.99717 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47089 * 89.99764 * 8 6 4 10 10 H 1.48496 * 109.46925 * 210.00041 * 8 6 4 11 11 H 1.48505 * 109.46961 * 330.00088 * 8 6 4 12 12 C 1.53038 * 109.46093 * 240.03871 * 2 1 3 13 13 C 1.53191 * 109.31671 * 178.61238 * 12 2 1 14 14 N 1.46933 * 108.77254 * 54.63169 * 13 12 2 15 15 C 1.34784 * 120.62668 * 126.36991 * 14 13 12 16 16 O 1.21281 * 120.00039 * 355.04686 * 15 14 13 17 17 C 1.50703 * 119.99546 * 175.04555 * 15 14 13 18 18 H 1.08992 * 109.77650 * 40.17555 * 17 15 14 19 19 C 1.53634 * 109.78037 * 279.41052 * 17 15 14 20 20 C 1.52823 * 110.64992 * 183.28121 * 19 17 15 21 21 C 1.53637 * 110.60678 * 53.86447 * 20 19 17 22 22 C 1.52367 * 107.60204 * 303.59493 * 21 20 19 23 23 H 1.09005 * 110.92490 * 301.26495 * 22 21 20 24 24 C 1.53921 * 113.27071 * 174.93740 * 22 21 20 25 25 C 1.55331 * 102.08241 * 204.91014 * 24 22 21 26 26 C 1.54800 * 104.99347 * 22.19898 * 25 24 22 27 27 N 1.45537 * 109.77787 * 161.00076 * 17 15 14 28 28 C 1.46920 * 118.74169 * 306.64531 * 14 13 12 29 29 C 1.52763 * 109.00529 * 53.30785 * 28 14 13 30 30 H 1.08994 * 109.46845 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46993 * 299.96280 * 1 2 3 32 32 H 1.09001 * 109.46879 * 59.96591 * 1 2 3 33 33 H 0.96992 * 120.00343 * 240.03562 * 3 2 1 34 34 H 0.97000 * 120.00097 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.50272 * 58.66379 * 12 2 1 36 36 H 1.09002 * 109.49984 * 298.56479 * 12 2 1 37 37 H 1.09000 * 109.58855 * 294.84817 * 13 12 2 38 38 H 1.09004 * 109.59099 * 174.41609 * 13 12 2 39 39 H 1.09001 * 109.24374 * 303.58091 * 19 17 15 40 40 H 1.09004 * 109.24392 * 63.02042 * 19 17 15 41 41 H 1.08996 * 109.25648 * 174.15797 * 20 19 17 42 42 H 1.09008 * 109.24849 * 293.61958 * 20 19 17 43 43 H 1.09001 * 109.82964 * 63.11535 * 21 20 19 44 44 H 1.09001 * 109.83558 * 184.06169 * 21 20 19 45 45 H 1.08997 * 110.91184 * 323.11053 * 24 22 21 46 46 H 1.08998 * 110.90855 * 86.71877 * 24 22 21 47 47 H 1.09008 * 110.33713 * 263.32063 * 25 24 22 48 48 H 1.08994 * 110.33646 * 141.07651 * 25 24 22 49 49 H 1.08999 * 110.15736 * 244.52478 * 26 25 24 50 50 H 1.08998 * 110.15323 * 122.76639 * 26 25 24 51 51 H 1.09000 * 109.59200 * 173.14064 * 28 14 13 52 52 H 1.09003 * 109.58990 * 293.57286 * 28 14 13 53 53 H 1.09002 * 109.56424 * 185.55396 * 29 28 14 54 54 H 1.08998 * 109.36111 * 65.50392 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0179 1.3814 0.0000 4 6 1.6873 2.2243 1.0274 5 1 1.0673 1.8705 1.8379 6 6 2.1490 3.5333 1.0273 7 7 1.8317 4.3432 2.0150 8 14 3.2208 4.1454 -0.3749 9 1 2.3605 4.7111 -1.4450 10 1 4.1411 5.1968 0.1281 11 1 4.0129 3.0149 -0.9225 12 6 2.0399 -0.7206 -1.2501 13 6 3.5714 -0.6884 -1.2644 14 7 4.0679 -1.2487 -0.0001 15 6 4.9615 -2.2578 -0.0002 16 8 5.2954 -2.7720 -1.0466 17 6 5.5456 -2.7470 1.3000 18 1 4.7705 -2.7732 2.0658 19 6 6.6828 -1.8137 1.7429 20 6 7.3435 -2.3366 3.0179 21 6 7.7961 -3.7932 2.8341 22 6 6.5745 -4.6073 2.4261 23 1 5.7912 -4.5388 3.1810 24 6 6.9053 -6.0716 2.0860 25 6 5.7407 -6.4550 1.1324 26 6 5.2199 -5.1082 0.5746 27 7 6.1055 -4.0780 1.1185 28 6 3.5672 -0.6924 1.2642 29 6 2.0399 -0.7208 1.2500 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 2.5750 1.6991 -0.7277 34 1 2.1541 5.2581 2.0147 35 1 1.6573 -0.2206 -2.1399 36 1 1.6979 -1.7555 -1.2385 37 1 3.9143 0.3411 -1.3674 38 1 3.9417 -1.2844 -2.0986 39 1 7.4286 -1.7548 0.9501 40 1 6.2787 -0.8189 1.9305 41 1 8.2096 -1.7182 3.2535 42 1 6.6298 -2.2837 3.8401 43 1 8.5551 -3.8490 2.0537 44 1 8.1996 -4.1762 3.7714 45 1 7.8659 -6.1451 1.5762 46 1 6.8939 -6.6913 2.9827 47 1 4.9522 -6.9669 1.6841 48 1 6.1069 -7.0846 0.3215 49 1 4.1957 -4.9357 0.9052 50 1 5.2686 -5.1087 -0.5143 51 1 3.9347 -1.2908 2.0978 52 1 3.9097 0.3369 1.3715 53 1 1.6573 -0.2208 2.1398 54 1 1.6979 -1.7557 1.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274382330.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:06 Heat of formation + Delta-G solvation = -33.043652 kcal Electronic energy + Delta-G solvation = -31805.580996 eV Core-core repulsion = 27969.360571 eV Total energy + Delta-G solvation = -3836.220425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.93059 -40.50508 -39.05199 -36.28338 -35.83997 -34.23854 -33.46398 -32.10862 -31.59088 -30.25311 -29.36333 -28.23513 -25.82130 -25.22765 -24.34493 -23.57149 -22.58379 -22.00121 -21.11709 -20.50871 -19.78107 -19.40191 -18.17339 -17.32816 -16.60021 -16.53496 -16.43741 -16.24977 -15.85190 -15.75111 -15.28784 -15.04494 -14.90442 -14.75505 -14.41743 -14.37320 -14.17766 -13.84112 -13.72698 -13.68656 -13.45397 -13.17684 -12.96751 -12.75473 -12.70393 -12.59111 -12.53590 -12.29130 -12.17506 -12.16815 -12.03485 -11.85846 -11.71258 -11.66596 -11.63822 -11.43662 -11.27984 -11.14950 -10.92793 -10.55191 -9.69009 -9.27852 -9.19886 -7.94429 -5.25393 1.38640 1.39567 1.46386 1.53301 1.90126 2.52008 2.90629 3.32894 3.37890 3.52728 3.62828 3.72167 3.78556 3.88698 3.96991 4.01555 4.08093 4.09383 4.19089 4.22393 4.24459 4.32430 4.36851 4.45701 4.56370 4.59504 4.62764 4.69989 4.74091 4.82713 4.85349 4.92733 4.95236 4.98976 4.99486 5.03643 5.05543 5.06546 5.11583 5.14411 5.17276 5.25089 5.27944 5.29378 5.33353 5.46237 5.53737 5.61542 5.88965 6.04019 6.11124 6.30071 6.43845 7.14185 7.15976 7.92694 8.10722 9.27087 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.003569 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.200391 B = 7842.623593 C = 8532.449324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.195 3.805 3 N -0.743 5.743 4 C -0.198 4.198 5 H 0.068 0.932 6 C -0.060 4.060 7 N -0.984 5.984 8 Si 0.937 3.063 9 H -0.286 1.286 10 H -0.304 1.304 11 H -0.257 1.257 12 C -0.121 4.121 13 C 0.115 3.885 14 N -0.601 5.601 15 C 0.515 3.485 16 O -0.566 6.566 17 C 0.081 3.919 18 H 0.071 0.929 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.102 4.102 22 C 0.063 3.937 23 H 0.059 0.941 24 C -0.107 4.107 25 C -0.122 4.122 26 C 0.052 3.948 27 N -0.531 5.531 28 C 0.120 3.880 29 C -0.129 4.129 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.361 0.639 34 H 0.253 0.747 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.026 0.974 50 H 0.059 0.941 51 H 0.094 0.906 52 H 0.060 0.940 53 H 0.064 0.936 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 -22.048 1.303 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.106 3.894 3 N -0.387 5.387 4 C -0.330 4.330 5 H 0.085 0.915 6 C -0.251 4.251 7 N -0.636 5.636 8 Si 0.767 3.233 9 H -0.213 1.213 10 H -0.232 1.232 11 H -0.182 1.182 12 C -0.160 4.160 13 C -0.008 4.008 14 N -0.334 5.334 15 C 0.304 3.696 16 O -0.445 6.445 17 C -0.031 4.031 18 H 0.088 0.912 19 C -0.141 4.141 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.044 4.044 23 H 0.077 0.923 24 C -0.145 4.145 25 C -0.160 4.160 26 C -0.075 4.075 27 N -0.257 5.257 28 C -0.002 4.002 29 C -0.169 4.169 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.195 0.805 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.044 0.956 50 H 0.078 0.922 51 H 0.112 0.888 52 H 0.078 0.922 53 H 0.082 0.918 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.418 -22.161 0.558 24.086 hybrid contribution -0.461 1.490 -0.435 1.620 sum 8.957 -20.671 0.122 22.528 Atomic orbital electron populations 1.22109 0.96190 1.00857 1.01136 1.19790 0.92904 0.83212 0.93539 1.42932 1.61271 1.08948 1.25501 1.18880 1.23250 0.91212 0.99616 0.91461 1.25234 1.02989 0.97007 0.99867 1.69842 1.52448 1.06572 1.34750 0.85691 0.79323 0.78087 0.80249 1.21310 1.23170 1.18236 1.22051 0.94117 1.01485 0.98322 1.21501 0.94752 0.98053 0.86470 1.48181 1.42405 1.34806 1.08013 1.20880 0.78292 0.78958 0.91515 1.90625 1.61550 1.57658 1.34639 1.21494 0.96998 0.91550 0.93031 0.91165 1.21537 0.96151 0.97280 0.99147 1.21569 1.00931 0.96949 0.95769 1.21540 0.96514 0.93834 1.02071 1.22781 0.97388 0.95079 0.89129 0.92294 1.22352 0.98550 0.93913 0.99692 1.22627 0.98618 0.95236 0.99561 1.22461 0.93572 0.91667 0.99836 1.62566 1.39009 0.99978 1.24139 1.21608 0.94936 0.99046 0.84596 1.22125 0.94803 1.00137 0.99806 0.91311 0.94461 0.93384 0.80539 0.93816 0.89798 0.89778 0.92733 0.89703 0.92385 0.91283 0.90303 0.91126 0.91682 0.89078 0.90733 0.88805 0.90155 0.90631 0.95564 0.92218 0.88790 0.92189 0.91784 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.44 71.98 0.61 -4.03 16 2 C 0.19 6.49 0.74 3.63 0.00 6.49 16 3 N -0.74 -31.12 3.94 -303.22 -1.20 -32.31 16 4 C -0.20 -10.22 9.16 84.03 0.77 -9.45 16 5 H 0.07 3.78 6.93 -2.91 -0.02 3.76 16 6 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 7 N -0.98 -60.81 13.97 21.65 0.30 -60.51 16 8 Si 0.94 44.55 27.74 68.60 1.90 46.46 16 9 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 11 H -0.26 -11.16 6.52 99.48 0.65 -10.51 16 12 C -0.12 -3.44 4.96 30.67 0.15 -3.29 16 13 C 0.11 3.56 6.17 86.36 0.53 4.09 16 14 N -0.60 -18.36 2.98 -819.71 -2.44 -20.80 16 15 C 0.52 16.05 6.48 87.66 0.57 16.61 16 16 O -0.57 -21.04 14.58 -3.03 -0.04 -21.08 16 17 C 0.08 2.03 1.53 44.64 0.07 2.10 16 18 H 0.07 1.63 6.23 -2.39 -0.01 1.61 16 19 C -0.10 -2.37 5.29 30.75 0.16 -2.21 16 20 C -0.11 -1.95 5.94 30.75 0.18 -1.76 16 21 C -0.10 -1.56 5.68 30.60 0.17 -1.38 16 22 C 0.06 1.08 2.63 44.68 0.12 1.20 16 23 H 0.06 0.97 8.05 -2.38 -0.02 0.95 16 24 C -0.11 -1.50 6.61 31.71 0.21 -1.29 16 25 C -0.12 -1.96 6.98 32.01 0.22 -1.74 16 26 C 0.05 1.22 5.77 87.02 0.50 1.72 16 27 N -0.53 -12.60 4.20 -845.12 -3.55 -16.15 16 28 C 0.12 3.62 5.57 86.22 0.48 4.10 16 29 C -0.13 -3.97 4.69 30.53 0.14 -3.83 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.37 7.27 -2.39 -0.02 1.35 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.36 15.18 4.32 -92.71 -0.40 14.77 16 34 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 1.84 6.94 -2.39 -0.02 1.82 16 38 H 0.08 2.65 7.00 -2.39 -0.02 2.64 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.65 7.68 -2.38 -0.02 1.63 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 46 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.03 0.62 8.04 -2.39 -0.02 0.60 16 50 H 0.06 1.71 7.27 -2.39 -0.02 1.69 16 51 H 0.09 2.36 5.44 -2.39 -0.01 2.34 16 52 H 0.06 2.17 7.74 -2.39 -0.02 2.15 16 53 H 0.06 2.23 7.31 -2.39 -0.02 2.21 16 54 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -66.89 392.77 0.74 -66.14 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.41 Total: 33.81 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.36 Total: 4.45 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -6.89 Total: -129.77 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.04 Total: -21.08 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.46 kcal Total: -66.89 0.74 -66.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274382330.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.101 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds