Wall clock time and date at job start Tue Mar 31 2020 18:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.45244 * 2 1 4 4 C 1.36932 * 120.00070 * 299.97379 * 3 2 1 5 5 H 1.08000 * 119.99775 * 359.97438 * 4 3 2 6 6 C 1.38816 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31615 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99887 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47313 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46938 * 120.00191 * 8 6 4 11 11 H 1.48495 * 109.47014 * 239.99710 * 8 6 4 12 12 C 1.53042 * 109.46283 * 119.96626 * 2 1 3 13 13 C 1.53193 * 109.31601 * 181.38243 * 12 2 1 14 14 N 1.46923 * 108.77835 * 305.36893 * 13 12 2 15 15 C 1.34770 * 120.63116 * 233.58484 * 14 13 12 16 16 O 1.21281 * 120.00308 * 174.36353 * 15 14 13 17 17 C 1.50699 * 119.99997 * 354.36789 * 15 14 13 18 18 H 1.08995 * 109.78834 * 3.95276 * 17 15 14 19 19 C 1.53619 * 109.79732 * 124.75217 * 17 15 14 20 20 C 1.52818 * 110.70921 * 62.19720 * 19 17 15 21 21 C 1.53668 * 110.60131 * 53.75236 * 20 19 17 22 22 C 1.52247 * 107.56741 * 303.86874 * 21 20 19 23 23 H 1.08999 * 110.27188 * 301.88561 * 22 21 20 24 24 C 1.53258 * 113.91088 * 177.27089 * 22 21 20 25 25 C 1.54985 * 104.18888 * 215.56996 * 24 22 21 26 26 C 1.55194 * 104.93151 * 2.48881 * 25 24 22 27 27 N 1.45668 * 109.79294 * 243.16331 * 17 15 14 28 28 C 1.46923 * 118.73802 * 53.60490 * 14 13 12 29 29 C 1.53045 * 109.46158 * 240.03537 * 2 1 3 30 30 H 1.09001 * 109.46663 * 300.03254 * 1 2 3 31 31 H 1.08999 * 109.47073 * 60.03176 * 1 2 3 32 32 H 1.09004 * 109.46718 * 180.02562 * 1 2 3 33 33 H 0.97005 * 119.99914 * 119.95902 * 3 2 1 34 34 H 0.96994 * 120.00068 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.50016 * 301.33920 * 12 2 1 36 36 H 1.09003 * 109.49404 * 61.43180 * 12 2 1 37 37 H 1.09003 * 109.58305 * 65.15480 * 13 12 2 38 38 H 1.08996 * 109.58461 * 185.58001 * 13 12 2 39 39 H 1.08997 * 109.23342 * 182.52238 * 19 17 15 40 40 H 1.09008 * 109.23242 * 301.92522 * 19 17 15 41 41 H 1.09003 * 109.25533 * 174.03744 * 20 19 17 42 42 H 1.08995 * 109.25412 * 293.45907 * 20 19 17 43 43 H 1.08993 * 109.84388 * 63.39160 * 21 20 19 44 44 H 1.09006 * 109.83420 * 184.29152 * 21 20 19 45 45 H 1.09007 * 110.48758 * 334.24138 * 24 22 21 46 46 H 1.09001 * 110.49070 * 96.75541 * 24 22 21 47 47 H 1.09001 * 110.35341 * 121.35689 * 25 24 22 48 48 H 1.09004 * 110.34468 * 243.52587 * 25 24 22 49 49 H 1.09003 * 110.60513 * 142.50669 * 26 25 24 50 50 H 1.08992 * 110.61474 * 265.33147 * 26 25 24 51 51 H 1.08999 * 109.58803 * 186.60716 * 28 14 13 52 52 H 1.09000 * 109.70873 * 66.24797 * 28 14 13 53 53 H 1.09000 * 109.49467 * 298.56387 * 29 2 1 54 54 H 1.09000 * 109.49444 * 58.66529 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0179 1.3814 0.0000 4 6 1.6872 2.2243 -1.0273 5 1 1.0671 1.8706 -1.8377 6 6 2.1491 3.5334 -1.0270 7 7 2.9044 3.9645 -0.0391 8 14 1.6986 4.6829 -2.4288 9 1 0.8460 3.9607 -3.4067 10 1 0.9547 5.8506 -1.8917 11 1 2.9365 5.1517 -3.1018 12 6 2.0399 -0.7207 1.2501 13 6 3.5715 -0.6886 1.2642 14 7 4.0679 -1.2488 0.0000 15 6 4.9621 -2.2572 -0.0001 16 8 5.2872 -2.7794 -1.0453 17 6 5.5581 -2.7358 1.2987 18 1 5.1011 -2.2034 2.1327 19 6 5.3227 -4.2460 1.4538 20 6 6.0183 -5.0191 0.3341 21 6 7.5066 -4.6438 0.2616 22 6 7.5917 -3.1340 0.0846 23 1 7.0569 -2.8285 -0.8146 24 6 9.0247 -2.5912 0.0609 25 6 8.9233 -1.2197 0.7756 26 6 7.4394 -1.1069 1.2157 27 7 6.9965 -2.5061 1.2956 28 6 3.5714 -0.6885 -1.2642 29 6 2.0399 -0.7207 -1.2501 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 2.5750 1.6990 0.7278 34 1 3.2268 4.8793 -0.0387 35 1 1.6573 -0.2208 2.1398 36 1 1.6978 -1.7556 1.2383 37 1 3.9144 0.3409 1.3673 38 1 3.9417 -1.2846 2.0983 39 1 5.7173 -4.5739 2.4155 40 1 4.2521 -4.4481 1.4174 41 1 5.9263 -6.0884 0.5247 42 1 5.5411 -4.7819 -0.6167 43 1 8.0075 -4.9369 1.1841 44 1 7.9732 -5.1436 -0.5874 45 1 9.6940 -3.2568 0.6061 46 1 9.3677 -2.4642 -0.9660 47 1 9.5796 -1.1961 1.6456 48 1 9.1784 -0.4139 0.0872 49 1 7.3639 -0.6248 2.1904 50 1 6.8592 -0.5601 0.4725 51 1 3.9417 -1.2844 -2.0984 52 1 3.9143 0.3407 -1.3699 53 1 1.6979 -1.7556 -1.2383 54 1 1.6573 -0.2206 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274382336.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:13 Heat of formation + Delta-G solvation = -23.644956 kcal Electronic energy + Delta-G solvation = -32188.527339 eV Core-core repulsion = 28352.714472 eV Total energy + Delta-G solvation = -3835.812867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32780 -40.35216 -38.70496 -36.16477 -35.75356 -34.28058 -33.43579 -32.05282 -30.89762 -30.20847 -29.25015 -28.26485 -25.92093 -25.35979 -24.23808 -23.61477 -22.58589 -21.98313 -21.46250 -20.57169 -19.32843 -19.00858 -18.13645 -17.57611 -16.76061 -16.54350 -16.23510 -15.94691 -15.78107 -15.61621 -15.35140 -15.19452 -14.96623 -14.65956 -14.45148 -14.18236 -13.95465 -13.78185 -13.54200 -13.34893 -13.26204 -13.10407 -12.92628 -12.78644 -12.70138 -12.60145 -12.53189 -12.33841 -12.17441 -12.09441 -12.06231 -11.87434 -11.76881 -11.53223 -11.46886 -11.30120 -11.24563 -11.01348 -10.87976 -10.73140 -9.58636 -9.21617 -8.90208 -7.89525 -5.13802 1.44248 1.46764 1.52645 1.53764 2.02910 2.57629 2.91667 3.43706 3.47739 3.56080 3.67166 3.75360 3.86871 4.00428 4.03261 4.10756 4.11557 4.19092 4.23033 4.25175 4.35196 4.43029 4.47551 4.57379 4.61017 4.67970 4.72462 4.74686 4.79345 4.89916 4.91656 4.96226 4.97814 4.99689 5.03341 5.05429 5.07332 5.08911 5.13426 5.18062 5.21191 5.27477 5.33135 5.33809 5.35996 5.55706 5.58142 5.62715 5.65981 5.90386 6.05466 6.33836 6.50756 7.15955 7.41434 8.17882 8.41117 9.34075 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.003699 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.200412 B = 7567.249808 C = 8482.345483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.188 3.812 3 N -0.721 5.721 4 C -0.211 4.211 5 H 0.071 0.929 6 C -0.072 4.072 7 N -0.967 5.967 8 Si 0.952 3.048 9 H -0.270 1.270 10 H -0.298 1.298 11 H -0.302 1.302 12 C -0.121 4.121 13 C 0.109 3.891 14 N -0.596 5.596 15 C 0.480 3.520 16 O -0.564 6.564 17 C 0.061 3.939 18 H 0.117 0.883 19 C -0.093 4.093 20 C -0.126 4.126 21 C -0.090 4.090 22 C 0.026 3.974 23 H 0.068 0.932 24 C -0.114 4.114 25 C -0.117 4.117 26 C 0.032 3.968 27 N -0.488 5.488 28 C 0.130 3.870 29 C -0.123 4.123 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.374 0.626 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.012 0.988 51 H 0.064 0.936 52 H 0.044 0.956 53 H 0.067 0.933 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.172 -18.425 6.747 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.098 3.902 3 N -0.361 5.361 4 C -0.343 4.343 5 H 0.089 0.911 6 C -0.264 4.264 7 N -0.618 5.618 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.225 1.225 11 H -0.230 1.230 12 C -0.160 4.160 13 C -0.013 4.013 14 N -0.328 5.328 15 C 0.269 3.731 16 O -0.444 6.444 17 C -0.050 4.050 18 H 0.135 0.865 19 C -0.131 4.131 20 C -0.163 4.163 21 C -0.127 4.127 22 C -0.081 4.081 23 H 0.085 0.915 24 C -0.152 4.152 25 C -0.155 4.155 26 C -0.096 4.096 27 N -0.212 5.212 28 C 0.007 3.993 29 C -0.163 4.163 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.207 0.793 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.031 0.969 51 H 0.083 0.917 52 H 0.063 0.937 53 H 0.086 0.914 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.397 -18.848 6.538 21.277 hybrid contribution -0.561 2.199 -1.745 2.863 sum 6.836 -16.649 4.793 18.625 Atomic orbital electron populations 1.22125 0.96492 1.00699 1.00933 1.19855 0.92817 0.84209 0.93327 1.42621 1.60495 1.07320 1.25704 1.19407 1.23073 0.91674 1.00187 0.91142 1.25265 1.01943 0.98986 1.00235 1.69772 1.41607 1.16434 1.34036 0.85365 0.76801 0.79579 0.79864 1.19483 1.22517 1.22972 1.22042 0.94334 1.01552 0.98035 1.21901 0.95084 0.98989 0.85362 1.48339 1.42243 1.34536 1.07709 1.22328 0.78767 0.79024 0.93013 1.90489 1.60664 1.57442 1.35854 1.22156 0.89243 0.99942 0.93694 0.86537 1.21472 1.01003 0.89905 1.00708 1.21666 0.95831 0.99814 0.99040 1.21331 0.96473 0.92982 1.01953 1.23118 0.95449 0.96400 0.93173 0.91474 1.22166 0.95887 0.96656 1.00511 1.22511 0.94840 0.97248 1.00892 1.22933 0.96500 0.89264 1.00891 1.64466 1.06755 1.11729 1.38243 1.21189 0.94982 0.97104 0.86014 1.22175 0.94194 0.99815 1.00095 0.93457 0.94615 0.91426 0.79334 0.94519 0.89667 0.89194 0.92893 0.86959 0.88562 0.90851 0.90646 0.92858 0.90459 0.91679 0.89645 0.91780 0.89254 0.91818 0.88806 0.96934 0.91711 0.93710 0.91404 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 8.44 71.98 0.61 -4.08 16 2 C 0.19 6.53 0.74 3.63 0.00 6.53 16 3 N -0.72 -32.53 4.13 -303.21 -1.25 -33.79 16 4 C -0.21 -10.92 8.68 84.04 0.73 -10.19 16 5 H 0.07 3.60 6.70 -2.91 -0.02 3.58 16 6 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 7 N -0.97 -57.07 13.06 21.65 0.28 -56.79 16 8 Si 0.95 45.81 29.55 68.60 2.03 47.84 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 11 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 12 C -0.12 -3.28 4.96 30.67 0.15 -3.13 16 13 C 0.11 3.00 6.03 86.36 0.52 3.52 16 14 N -0.60 -18.80 2.97 -818.93 -2.43 -21.23 16 15 C 0.48 14.60 5.39 87.66 0.47 15.07 16 16 O -0.56 -20.29 10.71 -3.03 -0.03 -20.32 16 17 C 0.06 1.44 2.84 44.61 0.13 1.56 16 18 H 0.12 2.35 5.18 -2.39 -0.01 2.34 16 19 C -0.09 -1.80 5.55 30.74 0.17 -1.63 16 20 C -0.13 -2.69 5.57 30.76 0.17 -2.52 16 21 C -0.09 -1.87 5.64 30.57 0.17 -1.70 16 22 C 0.03 0.65 2.23 44.38 0.10 0.75 16 23 H 0.07 2.20 4.75 -4.74 -0.02 2.18 16 24 C -0.11 -2.40 6.65 31.36 0.21 -2.19 16 25 C -0.12 -2.47 7.05 32.03 0.23 -2.24 16 26 C 0.03 0.80 6.55 87.04 0.57 1.37 16 27 N -0.49 -11.56 4.82 -843.39 -4.06 -15.63 16 28 C 0.13 4.85 6.18 86.36 0.53 5.38 16 29 C -0.12 -4.27 4.71 30.67 0.14 -4.12 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.29 7.27 -2.39 -0.02 1.27 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.37 18.28 6.46 -92.70 -0.60 17.68 16 34 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.77 6.94 -2.39 -0.02 1.75 16 38 H 0.11 2.30 5.15 -2.39 -0.01 2.29 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.48 5.99 -2.39 -0.01 1.46 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.08 1.51 8.00 -2.38 -0.02 1.49 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.01 0.39 7.32 -2.39 -0.02 0.37 16 51 H 0.06 2.50 7.00 -2.39 -0.02 2.48 16 52 H 0.04 2.01 7.74 -2.39 -0.02 1.99 16 53 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 54 H 0.05 2.07 7.31 -2.39 -0.02 2.06 16 Total: -1.00 -63.58 387.36 0.18 -63.41 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.27 Total: 37.67 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.37 Total: -1.16 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -7.47 Total: -127.43 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.03 Total: -20.32 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -63.58 0.18 -63.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274382336.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.761 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds