Wall clock time and date at job start Tue Mar 31 2020 18:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47493 * 2 1 4 4 C 1.52996 * 109.47493 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47266 * 175.81058 * 4 3 2 6 6 C 1.50695 * 115.54933 * 294.64261 * 5 4 3 7 7 O 1.21285 * 120.00486 * 100.48894 * 6 5 4 8 8 N 1.34780 * 120.00258 * 280.49017 * 6 5 4 9 9 C 1.47078 * 120.88532 * 175.09224 * 8 6 5 10 10 C 1.53241 * 108.51738 * 231.20688 * 9 8 6 11 11 N 1.46899 * 109.34139 * 306.16554 * 10 9 8 12 12 C 1.46902 * 110.99915 * 187.25553 * 11 10 9 13 13 C 1.53495 * 114.20194 * 179.97438 * 12 11 10 14 14 N 1.47073 * 88.04803 * 220.37605 * 13 12 11 15 15 C 1.36935 * 136.05682 * 207.06074 * 14 13 12 16 16 H 1.08002 * 120.00153 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00138 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99583 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00331 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46843 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47023 * 119.99902 * 19 17 15 22 22 H 1.48498 * 109.46991 * 240.00074 * 19 17 15 23 23 C 1.47064 * 87.88335 * 27.09519 * 14 13 12 24 24 C 1.46895 * 111.26754 * 63.10658 * 11 10 9 25 25 C 1.47078 * 120.87932 * 355.11233 * 8 6 5 26 26 C 1.52997 * 117.51703 * 80.34289 * 5 4 3 27 27 C 1.53001 * 60.00227 * 107.48181 * 26 5 4 28 28 H 1.08996 * 109.47770 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47307 * 300.00401 * 1 2 3 30 30 H 1.09011 * 109.46821 * 59.99919 * 1 2 3 31 31 H 1.09002 * 109.47307 * 239.99599 * 2 1 3 32 32 H 1.08999 * 109.47120 * 119.99983 * 2 1 3 33 33 H 1.09002 * 109.47171 * 59.99516 * 3 2 1 34 34 H 1.08999 * 109.46924 * 300.00103 * 3 2 1 35 35 H 1.08995 * 109.46983 * 55.80560 * 4 3 2 36 36 H 1.09004 * 109.46767 * 295.80832 * 4 3 2 37 37 H 1.08990 * 109.62843 * 111.49534 * 9 8 6 38 38 H 1.08995 * 109.78622 * 351.00873 * 9 8 6 39 39 H 1.09005 * 109.48970 * 186.20945 * 10 9 8 40 40 H 1.08992 * 109.49398 * 66.13027 * 10 9 8 41 41 H 1.08994 * 113.41549 * 313.19947 * 12 11 10 42 42 H 1.09005 * 113.46705 * 105.57216 * 13 12 11 43 43 H 1.09000 * 113.47360 * 335.18784 * 13 12 11 44 44 H 0.97000 * 119.99528 * 180.02562 * 18 17 15 45 45 H 1.08996 * 113.47037 * 87.66068 * 23 14 13 46 46 H 1.09000 * 113.46855 * 218.04109 * 23 14 13 47 47 H 1.09004 * 109.49218 * 56.85290 * 24 11 10 48 48 H 1.08999 * 109.49376 * 176.93354 * 24 11 10 49 49 H 1.09003 * 109.63433 * 248.50842 * 25 8 6 50 50 H 1.09011 * 109.63194 * 8.88743 * 25 8 6 51 51 H 1.09004 * 117.50016 * 214.96650 * 26 5 4 52 52 H 1.08998 * 117.50158 * 359.97438 * 26 5 4 53 53 H 1.08999 * 117.50127 * 252.51247 * 27 26 5 54 54 H 1.08997 * 117.50428 * 107.48705 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8811 -0.1060 6 6 3.7616 3.5906 -1.3968 7 8 2.8386 4.3759 -1.4456 8 7 4.5026 3.3526 -2.4972 9 6 4.1449 3.9510 -3.7923 10 6 4.0985 2.8392 -4.8459 11 7 5.3693 2.1024 -4.8320 12 6 5.4326 1.1410 -5.9409 13 6 6.7341 0.3291 -5.9964 14 7 6.7098 0.4849 -7.4586 15 6 7.1818 -0.2204 -8.5333 16 1 7.7245 -1.1413 -8.3787 17 6 6.9630 0.2483 -9.8214 18 7 6.3012 1.3703 -10.0098 19 14 7.6075 -0.7134 -11.2874 20 1 8.3127 -1.9299 -10.8100 21 1 6.4715 -1.1089 -12.1583 22 1 8.5513 0.1343 -12.0593 23 6 5.9562 1.7318 -7.2587 24 6 5.5830 1.4330 -3.5420 25 6 5.6902 2.4871 -2.4349 26 6 4.1016 3.7190 1.1739 27 6 5.4123 3.2097 0.5708 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9329 0.8650 -0.8509 36 1 3.9337 0.9949 0.9243 37 1 4.8943 4.6907 -4.0733 38 1 3.1678 4.4286 -3.7207 39 1 3.9435 3.2784 -5.8314 40 1 3.2798 2.1566 -4.6186 41 1 4.5276 0.5430 -6.0479 42 1 6.6159 -0.7035 -5.6679 43 1 7.5780 0.8287 -5.5206 44 1 6.1479 1.6976 -10.9100 45 1 6.5922 2.6058 -7.1190 46 1 5.1772 1.8925 -8.0040 47 1 4.7435 0.7700 -3.3328 48 1 6.5046 0.8523 -3.5818 49 1 6.5883 3.0862 -2.5854 50 1 5.7357 1.9972 -1.4621 51 1 3.8856 4.7835 1.0824 52 1 3.7520 3.2455 2.0914 53 1 5.9252 2.4011 1.0915 54 1 6.0585 3.9390 0.0824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274479327.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:16 Heat of formation + Delta-G solvation = 28.577298 kcal Electronic energy + Delta-G solvation = -30306.695352 eV Core-core repulsion = 26473.147012 eV Total energy + Delta-G solvation = -3833.548340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.67932 -40.39097 -38.54561 -37.84333 -35.85337 -35.17414 -33.87173 -32.24308 -30.86472 -29.88634 -27.98731 -26.59173 -25.83030 -24.67573 -24.44063 -23.59107 -23.29165 -21.88661 -21.51298 -20.80521 -19.51488 -18.76333 -17.85031 -17.29613 -16.94108 -16.70113 -16.57536 -16.23278 -16.01069 -15.80621 -15.65544 -15.26950 -15.02291 -14.73438 -14.41944 -14.13043 -13.95992 -13.88751 -13.81212 -13.37370 -13.34658 -13.11871 -12.97462 -12.86204 -12.66471 -12.61192 -12.39086 -12.33630 -12.25121 -12.20148 -12.12248 -11.96164 -11.78874 -11.71738 -11.48044 -11.24276 -11.00035 -10.90216 -10.87817 -10.58873 -9.83297 -9.26391 -8.93411 -7.91447 -5.25660 1.45882 1.47381 1.54167 1.57688 1.89666 2.44665 2.71550 2.85779 3.30641 3.41746 3.52907 3.61725 3.66299 3.85879 3.93011 3.97197 4.03671 4.11232 4.19031 4.21155 4.25035 4.32259 4.36762 4.41019 4.53470 4.55491 4.69562 4.72676 4.74318 4.76912 4.79627 4.83368 4.86709 4.88186 4.90693 4.97004 5.00275 5.03710 5.07383 5.10390 5.16669 5.23794 5.26284 5.27680 5.36301 5.40049 5.44150 5.48161 5.50594 5.89979 6.12239 6.13314 6.41913 6.89699 7.12150 7.58937 8.59813 9.26529 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002465 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.915971 B =11357.678830 C =11930.532548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.114 4.114 4 C -0.069 4.069 5 C -0.167 4.167 6 C 0.548 3.452 7 O -0.585 6.585 8 N -0.606 5.606 9 C 0.123 3.877 10 C 0.051 3.949 11 N -0.524 5.524 12 C 0.054 3.946 13 C 0.136 3.864 14 N -0.644 5.644 15 C -0.226 4.226 16 H 0.089 0.911 17 C -0.070 4.070 18 N -0.954 5.954 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.173 3.827 24 C 0.040 3.960 25 C 0.117 3.883 26 C -0.148 4.148 27 C -0.144 4.144 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.248 0.752 45 H 0.020 0.980 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.119 0.881 51 H 0.080 0.920 52 H 0.122 0.878 53 H 0.135 0.865 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 -0.284 27.105 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.152 4.152 4 C -0.106 4.106 5 C -0.170 4.170 6 C 0.338 3.662 7 O -0.466 6.466 8 N -0.338 5.338 9 C 0.000 4.000 10 C -0.078 4.078 11 N -0.250 5.250 12 C -0.056 4.056 13 C 0.011 3.989 14 N -0.370 5.370 15 C -0.354 4.354 16 H 0.107 0.893 17 C -0.263 4.263 18 N -0.603 5.603 19 Si 0.810 3.190 20 H -0.186 1.186 21 H -0.219 1.219 22 H -0.220 1.220 23 C 0.046 3.954 24 C -0.088 4.088 25 C -0.005 4.005 26 C -0.185 4.185 27 C -0.180 4.180 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.119 0.881 49 H 0.101 0.899 50 H 0.137 0.863 51 H 0.099 0.901 52 H 0.141 0.859 53 H 0.153 0.847 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.277 0.362 26.672 27.016 hybrid contribution -0.651 -0.383 -1.632 1.798 sum -4.928 -0.021 25.041 25.521 Atomic orbital electron populations 1.21789 0.96146 1.01879 1.01429 1.21510 0.95812 0.96041 1.02465 1.21513 0.95605 0.96951 1.01107 1.21125 0.95001 0.90451 1.04029 1.21399 1.06097 0.98268 0.91190 1.20193 0.80563 0.80584 0.84904 1.90654 1.32451 1.37967 1.85485 1.48241 1.28474 1.48815 1.08287 1.21573 1.01865 0.95046 0.81503 1.22342 0.90021 0.95837 0.99599 1.62052 1.33204 1.26937 1.02804 1.23490 0.96989 0.93648 0.91442 1.22494 0.94604 0.97561 0.84241 1.45744 1.65408 1.24451 1.01442 1.19367 1.28777 1.03036 0.84222 0.89327 1.25706 1.01792 0.98749 1.00081 1.70048 1.46480 1.23286 1.20487 0.84955 0.77190 0.77949 0.78903 1.18572 1.21928 1.21991 1.21927 0.92988 0.88748 0.91703 1.22561 1.02290 0.95801 0.88159 1.22080 0.86934 0.91662 0.99862 1.23050 1.00953 0.99255 0.95246 1.23325 0.89262 1.04060 1.01397 0.91992 0.92338 0.94165 0.92589 0.90276 0.91707 0.95195 0.91185 0.87955 0.90400 0.89972 0.90217 0.95184 0.92275 0.92954 0.92812 0.94317 0.96233 0.95172 0.94555 0.88091 0.89896 0.86322 0.90131 0.85948 0.84727 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -1.70 5.93 30.59 0.18 -1.52 16 3 C -0.11 -1.90 5.14 30.59 0.16 -1.74 16 4 C -0.07 -0.89 4.86 30.59 0.15 -0.74 16 5 C -0.17 -2.65 0.75 -52.93 -0.04 -2.69 16 6 C 0.55 13.38 6.19 87.65 0.54 13.93 16 7 O -0.59 -19.25 16.47 -3.04 -0.05 -19.30 16 8 N -0.61 -13.79 3.01 -817.95 -2.46 -16.26 16 9 C 0.12 3.16 6.58 86.35 0.57 3.73 16 10 C 0.05 1.43 5.61 86.38 0.48 1.91 16 11 N -0.52 -15.27 4.62 -868.91 -4.01 -19.28 16 12 C 0.05 1.97 3.53 45.41 0.16 2.13 16 13 C 0.14 5.28 7.13 83.18 0.59 5.88 16 14 N -0.64 -33.33 3.78 -737.88 -2.79 -36.12 16 15 C -0.23 -12.72 10.75 84.03 0.90 -11.82 16 16 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 18 N -0.95 -58.59 11.51 21.65 0.25 -58.34 16 19 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 C 0.17 8.36 7.22 83.22 0.60 8.96 16 24 C 0.04 0.87 5.46 86.38 0.47 1.34 16 25 C 0.12 2.05 6.13 86.35 0.53 2.58 16 26 C -0.15 -2.02 9.87 30.59 0.30 -1.72 16 27 C -0.14 -1.48 8.28 30.60 0.25 -1.23 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.03 0.69 7.59 -2.39 -0.02 0.68 16 35 H 0.07 0.94 7.61 -2.39 -0.02 0.92 16 36 H 0.10 0.79 8.09 -2.39 -0.02 0.77 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.28 7.11 -2.39 -0.02 2.26 16 39 H 0.08 2.41 8.11 -2.38 -0.02 2.39 16 40 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 42 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.05 1.98 7.90 -2.39 -0.02 1.96 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.03 1.66 7.12 -2.39 -0.02 1.64 16 47 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.10 2.01 6.82 -2.39 -0.02 1.99 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.12 1.44 4.77 -2.38 -0.01 1.42 16 51 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 52 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 54 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -73.04 418.78 0.84 -72.20 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.84 Total: 15.40 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 7.04 Total: 13.82 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -9.02 Total: -130.00 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.04 0.84 -72.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274479327.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.776 kcal (2) G-P(sol) polarization free energy of solvation -73.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds