Wall clock time and date at job start Tue Mar 31 2020 18:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 120.00089 * 2 1 4 4 C 1.52999 * 109.47197 * 124.99642 * 3 2 1 5 5 C 1.53008 * 109.46868 * 60.00329 * 4 3 2 6 6 C 1.53001 * 109.47329 * 300.00421 * 4 3 2 7 7 C 1.50696 * 109.47238 * 180.02562 * 4 3 2 8 8 O 1.21286 * 119.99627 * 6.62261 * 7 4 3 9 9 N 1.34774 * 120.00225 * 186.62952 * 7 4 3 10 10 C 1.47083 * 120.88056 * 354.86806 * 9 7 4 11 11 C 1.53243 * 108.51886 * 231.20906 * 10 9 7 12 12 N 1.46895 * 109.34071 * 306.16916 * 11 10 9 13 13 C 1.46899 * 110.99965 * 187.25405 * 12 11 10 14 14 H 1.09005 * 110.91240 * 51.09914 * 13 12 11 15 15 C 1.55163 * 111.00624 * 174.99886 * 13 12 11 16 16 C 1.54316 * 102.94058 * 153.57932 * 15 13 12 17 17 N 1.47022 * 107.27624 * 337.80366 * 16 15 13 18 18 C 1.36931 * 125.64997 * 178.97737 * 17 16 15 19 19 H 1.08010 * 120.00010 * 174.80573 * 18 17 16 20 20 C 1.38810 * 120.00153 * 354.80590 * 18 17 16 21 21 N 1.31617 * 119.99936 * 7.04924 * 20 18 17 22 22 Si 1.86803 * 119.99870 * 187.04964 * 20 18 17 23 23 H 1.48498 * 109.47075 * 94.98737 * 22 20 18 24 24 H 1.48497 * 109.47068 * 214.98540 * 22 20 18 25 25 H 1.48498 * 109.47150 * 334.98523 * 22 20 18 26 26 C 1.47425 * 108.69872 * 358.94767 * 17 16 15 27 27 C 1.46904 * 111.27054 * 63.10529 * 12 11 10 28 28 C 1.47076 * 120.88345 * 174.89373 * 9 7 4 29 29 H 1.07995 * 119.99843 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99856 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00070 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46845 * 5.00129 * 3 2 1 33 33 H 1.09001 * 109.47140 * 244.99844 * 3 2 1 34 34 H 1.08996 * 109.46769 * 186.63127 * 5 4 3 35 35 H 1.09002 * 109.47006 * 306.63380 * 5 4 3 36 36 H 1.09003 * 109.47035 * 66.63142 * 5 4 3 37 37 H 1.09001 * 109.46895 * 315.96295 * 6 4 3 38 38 H 1.08998 * 109.47102 * 75.96341 * 6 4 3 39 39 H 1.09000 * 109.46668 * 195.96374 * 6 4 3 40 40 H 1.08994 * 109.63028 * 111.50039 * 10 9 7 41 41 H 1.09002 * 109.62614 * 350.91892 * 10 9 7 42 42 H 1.09004 * 109.48679 * 186.20663 * 11 10 9 43 43 H 1.09004 * 109.49299 * 66.13026 * 11 10 9 44 44 H 1.09001 * 110.71458 * 35.21448 * 15 13 12 45 45 H 1.09001 * 110.71730 * 271.94042 * 15 13 12 46 46 H 1.08997 * 109.88660 * 97.22809 * 16 15 13 47 47 H 1.09005 * 109.88227 * 218.39202 * 16 15 13 48 48 H 0.97003 * 119.99823 * 179.97438 * 21 20 18 49 49 H 1.08999 * 110.36793 * 142.96689 * 26 17 16 50 50 H 1.08998 * 110.36891 * 265.17495 * 26 17 16 51 51 H 1.09000 * 109.49093 * 56.85389 * 27 12 11 52 52 H 1.08999 * 109.49059 * 176.93655 * 27 12 11 53 53 H 1.09007 * 109.62816 * 248.50084 * 28 9 7 54 54 H 1.08999 * 109.62999 * 9.08093 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3332 1.1817 5 6 4.0246 0.1729 1.0559 6 6 2.2521 1.1962 2.4890 7 6 3.7881 2.6385 1.1820 8 8 3.4868 3.5125 0.3970 9 7 4.7964 2.8345 2.0545 10 6 5.1058 1.8346 3.0879 11 6 5.1715 2.5420 4.4456 12 7 6.1163 3.6639 4.3644 13 6 6.3385 4.2619 5.6876 14 1 6.5970 3.4983 6.4212 15 6 7.4290 5.3639 5.6240 16 6 7.0561 6.2876 6.8025 17 7 5.6325 6.0673 7.0965 18 6 4.9181 6.6825 8.0895 19 1 3.8542 6.5155 8.1723 20 6 5.5611 7.5210 8.9897 21 7 6.8263 7.8349 8.8083 22 14 4.6307 8.2036 10.4586 23 1 4.8675 7.3369 11.6409 24 1 5.1069 9.5796 10.7503 25 1 3.1780 8.2372 10.1524 26 6 5.1015 5.0747 6.1445 27 6 5.6620 4.6744 3.3996 28 6 5.6163 4.0543 1.9990 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4026 -0.9314 34 1 4.6401 0.1215 1.9540 35 1 3.4759 -0.7614 0.9374 36 1 4.6628 0.3323 0.1867 37 1 1.3707 1.8366 2.4534 38 1 1.9428 0.1594 2.6204 39 1 2.8850 1.4953 3.3245 40 1 6.0670 1.3689 2.8707 41 1 4.3241 1.0752 3.1081 42 1 5.5076 1.8378 5.2067 43 1 4.1825 2.9176 4.7083 44 1 7.3764 5.9042 4.6788 45 1 8.4202 4.9343 5.7693 46 1 7.6582 6.0361 7.6756 47 1 7.2202 7.3286 6.5239 48 1 7.2756 8.4211 9.4372 49 1 4.3807 4.4231 6.6385 50 1 4.6387 5.5747 5.2937 51 1 4.6662 5.0202 3.6769 52 1 6.3539 5.5166 3.4021 53 1 6.6268 3.8019 1.6772 54 1 5.1723 4.7624 1.2995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278349967.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:12 Heat of formation + Delta-G solvation = 20.305197 kcal Electronic energy + Delta-G solvation = -30763.945418 eV Core-core repulsion = 26930.038373 eV Total energy + Delta-G solvation = -3833.907046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91992 -40.30112 -38.10636 -37.64144 -35.71991 -34.07661 -33.54196 -32.02066 -31.08280 -29.41123 -28.32304 -27.73340 -27.49101 -26.01706 -25.03082 -23.90978 -22.46945 -21.81845 -20.98736 -20.06347 -19.47643 -18.94334 -17.79400 -17.30838 -17.02003 -16.64163 -16.52799 -16.18612 -15.97891 -15.74681 -15.70896 -15.16248 -14.95768 -14.71566 -14.52939 -14.20921 -14.10030 -13.91057 -13.67595 -13.50042 -13.25848 -13.22792 -12.95778 -12.88571 -12.78182 -12.68075 -12.44333 -12.32405 -12.15941 -12.09672 -12.02272 -11.91696 -11.83425 -11.80798 -11.76436 -11.45044 -11.29638 -10.71678 -10.56390 -10.16072 -9.81699 -9.31996 -8.86305 -7.89748 -5.24688 1.42488 1.42932 1.44684 1.53633 1.57662 1.96472 2.45338 2.79518 3.28083 3.34667 3.72886 3.73468 3.79645 3.86011 3.91199 3.97150 3.99288 4.19726 4.21005 4.22434 4.26266 4.32040 4.34925 4.44167 4.49593 4.61939 4.64815 4.67082 4.72825 4.74943 4.79788 4.81927 4.88295 4.90326 4.92550 5.00100 5.04584 5.10796 5.13878 5.17202 5.19648 5.30419 5.35518 5.40694 5.47116 5.64771 5.72609 5.78409 5.94548 5.95701 6.09392 6.18180 6.41198 7.06533 7.11664 7.73379 8.37962 9.20667 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.002513 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.456620 B =11137.502578 C =11811.084556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.068 4.068 4 C -0.070 4.070 5 C -0.155 4.155 6 C -0.150 4.150 7 C 0.517 3.483 8 O -0.590 6.590 9 N -0.608 5.608 10 C 0.097 3.903 11 C 0.032 3.968 12 N -0.511 5.511 13 C 0.090 3.910 14 H 0.097 0.903 15 C -0.120 4.120 16 C 0.184 3.816 17 N -0.624 5.624 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.271 1.271 26 C 0.106 3.894 27 C 0.040 3.960 28 C 0.123 3.877 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.016 0.984 47 H 0.001 0.999 48 H 0.248 0.752 49 H 0.033 0.967 50 H 0.015 0.985 51 H 0.022 0.978 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 -21.983 -16.487 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.106 4.106 4 C -0.073 4.073 5 C -0.212 4.212 6 C -0.207 4.207 7 C 0.306 3.694 8 O -0.470 6.470 9 N -0.340 5.340 10 C -0.024 4.024 11 C -0.097 4.097 12 N -0.235 5.235 13 C -0.019 4.019 14 H 0.115 0.885 15 C -0.159 4.159 16 C 0.059 3.941 17 N -0.351 5.351 18 C -0.376 4.376 19 H 0.094 0.906 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.806 3.194 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.195 1.195 26 C -0.021 4.021 27 C -0.089 4.089 28 C 0.000 4.000 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.150 0.850 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.150 0.850 42 H 0.127 0.873 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.035 0.965 47 H 0.020 0.980 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.033 0.967 51 H 0.040 0.960 52 H 0.105 0.895 53 H 0.108 0.892 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.680 -21.579 -16.916 27.816 hybrid contribution -1.172 1.858 1.261 2.533 sum -5.852 -19.722 -15.655 25.851 Atomic orbital electron populations 1.24004 0.96109 1.02239 1.00904 1.22956 0.95914 0.97835 0.99986 1.20530 0.97127 0.96115 0.96791 1.20723 0.96178 0.92152 0.98208 1.22335 0.98379 0.96667 1.03770 1.22149 0.99694 1.04361 0.94477 1.21296 0.79247 0.89630 0.79188 1.90658 1.67523 1.46769 1.42052 1.48222 1.32063 1.21133 1.32581 1.22720 1.04356 0.90787 0.84576 1.22681 0.94147 0.93936 0.98908 1.62204 1.45698 1.09186 1.06375 1.22730 0.93930 0.95320 0.89945 0.88470 1.22809 0.98934 0.96018 0.98119 1.20946 0.84257 0.95068 0.93845 1.44690 1.07688 1.47321 1.35418 1.19391 0.91939 1.21844 1.04444 0.90597 1.25664 0.97249 1.00828 1.01857 1.70192 1.11362 1.40128 1.37891 0.85078 0.77942 0.76959 0.79465 1.21005 1.22008 1.19532 1.22318 0.96718 0.91075 0.91944 1.22503 0.98819 0.95381 0.92178 1.21621 0.95838 0.86801 0.95761 0.86817 0.89625 0.84985 0.93075 0.91643 0.89287 0.88930 0.92602 0.93427 0.88548 0.91009 0.88480 0.85042 0.87310 0.95525 0.91093 0.89590 0.96525 0.98045 0.94245 0.94853 0.96711 0.96022 0.89517 0.89211 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.37 14.32 67.78 0.97 -1.40 16 2 C -0.15 -1.80 7.98 25.64 0.20 -1.60 16 3 C -0.07 -1.19 3.98 29.85 0.12 -1.07 16 4 C -0.07 -1.11 0.52 -52.93 -0.03 -1.13 16 5 C -0.15 -1.50 7.86 71.98 0.57 -0.94 16 6 C -0.15 -2.06 7.53 71.98 0.54 -1.52 16 7 C 0.52 12.38 6.47 87.66 0.57 12.95 16 8 O -0.59 -19.38 15.43 -3.05 -0.05 -19.43 16 9 N -0.61 -12.90 3.00 -817.94 -2.45 -15.35 16 10 C 0.10 1.44 4.05 86.35 0.35 1.79 16 11 C 0.03 0.63 5.28 86.39 0.46 1.08 16 12 N -0.51 -12.98 4.66 -861.88 -4.02 -17.00 16 13 C 0.09 2.93 3.11 46.31 0.14 3.07 16 14 H 0.10 3.07 8.05 -2.38 -0.02 3.06 16 15 C -0.12 -4.33 6.46 31.78 0.21 -4.13 16 16 C 0.18 9.16 5.38 86.73 0.47 9.63 16 17 N -0.62 -32.68 3.39 -692.01 -2.35 -35.03 16 18 C -0.25 -14.19 10.26 84.03 0.86 -13.33 16 19 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 20 C -0.06 -3.62 5.48 84.86 0.46 -3.15 16 21 N -0.95 -57.59 10.36 21.65 0.22 -57.37 16 22 Si 0.98 46.30 29.56 68.60 2.03 48.33 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 C 0.11 4.38 6.03 86.85 0.52 4.91 16 27 C 0.04 1.09 4.74 86.38 0.41 1.50 16 28 C 0.12 2.92 6.61 86.35 0.57 3.50 16 29 H 0.11 0.99 8.06 -2.91 -0.02 0.96 16 30 H 0.09 1.20 7.84 -2.91 -0.02 1.17 16 31 H 0.13 1.03 6.66 -2.91 -0.02 1.01 16 32 H 0.05 1.12 7.68 -2.39 -0.02 1.11 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 0.63 4.63 -2.39 -0.01 0.61 16 35 H 0.09 0.53 6.24 -2.39 -0.01 0.52 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 0.82 8.04 -2.39 -0.02 0.80 16 38 H 0.10 0.86 7.72 -2.39 -0.02 0.85 16 39 H 0.07 0.98 5.06 -2.39 -0.01 0.97 16 40 H 0.10 1.16 8.05 -2.39 -0.02 1.14 16 41 H 0.13 1.35 2.77 -2.39 -0.01 1.34 16 42 H 0.11 1.76 8.04 -2.38 -0.02 1.74 16 43 H 0.03 0.62 7.74 -2.38 -0.02 0.60 16 44 H 0.07 2.43 5.80 -2.39 -0.01 2.41 16 45 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.02 0.92 7.30 -2.39 -0.02 0.90 16 47 H 0.00 0.07 7.61 -2.38 -0.02 0.06 16 48 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 49 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.02 0.65 5.63 -2.39 -0.01 0.64 16 51 H 0.02 0.70 6.30 -2.39 -0.02 0.69 16 52 H 0.09 2.48 5.82 -2.39 -0.01 2.46 16 53 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 54 H 0.08 2.10 7.04 -2.39 -0.02 2.08 16 Total: -1.00 -73.52 392.72 1.66 -71.86 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.88 Total: 13.84 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 7.39 Total: 10.15 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -8.59 Total: -124.74 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -73.52 1.66 -71.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278349967.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.162 kcal (2) G-P(sol) polarization free energy of solvation -73.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds