Wall clock time and date at job start Tue Mar 31 2020 18:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47408 * 2 1 4 4 C 1.32989 * 119.99852 * 88.83649 * 3 2 1 5 5 C 1.47107 * 120.00285 * 353.58867 * 4 3 2 6 6 O 1.21616 * 119.99559 * 353.90337 * 5 4 3 7 7 N 1.34769 * 120.00007 * 173.90151 * 5 4 3 8 8 C 1.47023 * 125.65183 * 359.69124 * 7 5 4 9 9 C 1.54309 * 107.27981 * 180.97239 * 8 7 5 10 10 C 1.55157 * 102.86170 * 22.52418 * 9 8 7 11 11 H 1.09002 * 111.03220 * 82.40124 * 10 9 8 12 12 N 1.46901 * 111.00045 * 206.22927 * 10 9 8 13 13 C 1.46897 * 111.00323 * 297.95410 * 12 10 9 14 14 C 1.53236 * 109.33806 * 172.75057 * 13 12 10 15 15 N 1.47078 * 108.52512 * 53.83101 * 14 13 12 16 16 C 1.36934 * 120.88372 * 128.79199 * 15 14 13 17 17 H 1.07999 * 120.00088 * 209.41737 * 16 15 14 18 18 C 1.38813 * 120.00138 * 29.41898 * 16 15 14 19 19 N 1.31626 * 119.99905 * 27.66239 * 18 16 15 20 20 Si 1.86800 * 120.00295 * 207.65833 * 18 16 15 21 21 H 1.48503 * 109.46906 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47152 * 120.00122 * 20 18 16 23 23 H 1.48496 * 109.46950 * 240.00043 * 20 18 16 24 24 C 1.47082 * 118.23471 * 308.81205 * 15 14 13 25 25 C 1.46908 * 110.99740 * 173.65112 * 12 10 9 26 26 C 1.47422 * 125.65117 * 180.02562 * 7 5 4 27 27 C 1.50700 * 119.99630 * 268.83766 * 3 2 1 28 28 C 1.53003 * 109.46962 * 274.99634 * 27 3 2 29 29 H 1.08996 * 109.47032 * 59.99469 * 1 2 3 30 30 H 1.09006 * 109.46532 * 299.99979 * 1 2 3 31 31 H 1.08996 * 109.47353 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47032 * 120.00531 * 2 1 3 33 33 H 1.09006 * 109.46532 * 240.00021 * 2 1 3 34 34 H 1.08004 * 119.99860 * 173.59226 * 4 3 2 35 35 H 1.09005 * 109.87997 * 300.52043 * 8 7 5 36 36 H 1.09006 * 109.87971 * 61.67759 * 8 7 5 37 37 H 1.09009 * 110.92167 * 264.11005 * 9 8 7 38 38 H 1.08997 * 110.59553 * 140.78845 * 9 8 7 39 39 H 1.09006 * 109.49442 * 292.70787 * 13 12 10 40 40 H 1.08999 * 109.49414 * 52.78887 * 13 12 10 41 41 H 1.09004 * 109.62949 * 294.11826 * 14 13 12 42 42 H 1.09011 * 109.62730 * 173.53864 * 14 13 12 43 43 H 0.97001 * 119.99872 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.63105 * 291.47664 * 24 15 14 45 45 H 1.09000 * 109.62283 * 170.89347 * 24 15 14 46 46 H 1.08997 * 109.49215 * 307.21839 * 25 12 10 47 47 H 1.09000 * 109.48731 * 67.26941 * 25 12 10 48 48 H 1.08997 * 110.36876 * 274.67810 * 26 7 5 49 49 H 1.09005 * 110.36690 * 36.88253 * 26 7 5 50 50 H 1.08993 * 109.47575 * 34.99623 * 27 3 2 51 51 H 1.08999 * 109.46680 * 155.00042 * 27 3 2 52 52 H 1.08999 * 109.47220 * 300.00003 * 28 27 3 53 53 H 1.08999 * 109.47089 * 60.00659 * 28 27 3 54 54 H 1.09005 * 109.46931 * 180.02562 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2321 2.0555 1.1515 5 6 1.8307 1.4245 2.4184 6 8 1.2173 0.3745 2.4071 7 7 2.1429 2.0102 3.5913 8 6 2.8830 3.2706 3.7497 9 6 3.0232 3.5327 5.2639 10 6 2.8569 2.1169 5.8763 11 1 3.7947 1.5625 5.8405 12 7 2.3469 2.1948 7.2517 13 6 3.2880 2.9118 8.1224 14 6 2.6436 3.1297 9.4955 15 7 2.1882 1.8291 10.0097 16 6 2.5339 1.4101 11.2666 17 1 2.6304 0.3551 11.4766 18 6 2.7602 2.3412 12.2710 19 7 2.1566 3.5103 12.2327 20 14 3.9212 1.9351 13.6769 21 1 4.4672 0.5670 13.4884 22 1 5.0364 2.9154 13.6968 23 1 3.1823 1.9998 14.9633 24 6 1.3519 0.9904 9.1376 25 6 2.0470 0.8567 7.7786 26 6 1.8048 1.4895 4.9285 27 6 2.3086 2.1223 -1.3049 28 6 3.7215 1.7777 -1.7801 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 0.5139 0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 2.6888 3.0342 1.1565 35 1 3.8692 3.1811 3.2941 36 1 2.3299 4.0863 3.2838 37 1 2.2378 4.2007 5.6177 38 1 4.0084 3.9388 5.4931 39 1 4.1982 2.3231 8.2371 40 1 3.5319 3.8767 7.6779 41 1 1.7923 3.8033 9.3978 42 1 3.3762 3.5578 10.1800 43 1 2.3150 4.1611 12.9343 44 1 0.3764 1.4583 9.0054 45 1 1.2304 0.0041 9.5854 46 1 1.3911 0.3311 7.0847 47 1 2.9745 0.2965 7.8975 48 1 0.8012 1.8033 5.2152 49 1 1.8799 0.4021 4.9423 50 1 1.5847 1.7977 -2.0522 51 1 2.2258 3.1998 -1.1627 52 1 4.4455 2.1023 -1.0328 53 1 3.8043 0.7002 -1.9223 54 1 3.9214 2.2854 -2.7237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280680057.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:10 Heat of formation + Delta-G solvation = -7.116635 kcal Electronic energy + Delta-G solvation = -29724.567734 eV Core-core repulsion = 25889.471589 eV Total energy + Delta-G solvation = -3835.096145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.33898 -40.03566 -38.43458 -37.14311 -35.79787 -33.49018 -32.80189 -31.91341 -31.86110 -30.76507 -29.60245 -27.76270 -25.76624 -24.84091 -24.46915 -24.18156 -23.45965 -21.67245 -20.92992 -20.77719 -18.94599 -18.80907 -18.26039 -17.52899 -16.80298 -16.38634 -16.19310 -15.96742 -15.68938 -15.53323 -15.32992 -15.22567 -14.90192 -14.88524 -14.58218 -14.45604 -14.09271 -13.92845 -13.71864 -13.55932 -13.35215 -13.26942 -13.12865 -12.94010 -12.65699 -12.60233 -12.57729 -12.52839 -12.19881 -12.13370 -12.04143 -11.90967 -11.83102 -11.76161 -11.58771 -11.46078 -11.36615 -10.55668 -10.51187 -10.12551 -9.54329 -9.34015 -8.71471 -7.92927 -5.33347 0.40719 1.43580 1.46936 1.57929 1.96080 2.29377 2.49718 2.95037 3.18131 3.35191 3.64699 3.69397 3.74039 3.80731 4.06611 4.15665 4.20218 4.29768 4.31044 4.33093 4.38068 4.42687 4.44835 4.54369 4.56061 4.62155 4.64361 4.65688 4.68671 4.79112 4.80076 4.86646 4.90109 4.95012 4.97309 5.00087 5.04084 5.11451 5.14717 5.16221 5.22954 5.27056 5.35550 5.37914 5.43604 5.56529 5.57323 5.64976 5.69865 6.11021 6.22053 6.34473 6.58118 7.09783 7.20778 7.80515 8.38375 9.12713 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.002062 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.356760 B =13575.915620 C =14050.647874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C -0.016 4.016 4 C -0.235 4.235 5 C 0.548 3.452 6 O -0.572 6.572 7 N -0.618 5.618 8 C 0.106 3.894 9 C -0.118 4.118 10 C 0.072 3.928 11 H 0.051 0.949 12 N -0.527 5.527 13 C 0.056 3.944 14 C 0.186 3.814 15 N -0.611 5.611 16 C -0.274 4.274 17 H 0.061 0.939 18 C -0.040 4.040 19 N -0.922 5.922 20 Si 0.958 3.042 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.292 1.292 24 C 0.145 3.855 25 C 0.056 3.944 26 C 0.123 3.877 27 C -0.093 4.093 28 C -0.146 4.146 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.022 0.978 40 H 0.093 0.907 41 H 0.003 0.997 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.014 0.986 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.024 0.976 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.088 0.912 51 H 0.088 0.912 52 H 0.055 0.945 53 H 0.053 0.947 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 0.794 -29.870 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C -0.018 4.018 4 C -0.255 4.255 5 C 0.342 3.658 6 O -0.454 6.454 7 N -0.352 5.352 8 C -0.016 4.016 9 C -0.156 4.156 10 C -0.037 4.037 11 H 0.069 0.931 12 N -0.253 5.253 13 C -0.073 4.073 14 C 0.060 3.940 15 N -0.335 5.335 16 C -0.404 4.404 17 H 0.078 0.922 18 C -0.237 4.237 19 N -0.566 5.566 20 Si 0.785 3.215 21 H -0.194 1.194 22 H -0.212 1.212 23 H -0.219 1.219 24 C 0.019 3.981 25 C -0.074 4.074 26 C 0.000 4.000 27 C -0.130 4.130 28 C -0.203 4.203 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.167 0.833 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.040 0.960 40 H 0.111 0.889 41 H 0.022 0.978 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.032 0.968 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.043 0.957 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.106 0.894 51 H 0.106 0.894 52 H 0.074 0.926 53 H 0.072 0.928 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.281 0.607 -29.827 30.013 hybrid contribution 0.921 -0.604 1.651 1.985 sum 4.202 0.002 -28.176 28.488 Atomic orbital electron populations 1.21486 0.94398 1.01565 1.01028 1.20909 0.96941 0.93471 1.02746 1.22808 0.88699 0.95072 0.95245 1.22403 1.09483 1.03292 0.90338 1.18823 0.79103 0.83811 0.84020 1.90733 1.42926 1.24404 1.87354 1.48431 1.56513 1.25182 1.05031 1.22213 0.97283 0.85381 0.96723 1.22715 1.04249 0.95424 0.93219 1.22729 0.95377 0.97868 0.87769 0.93089 1.61911 1.44435 1.17842 1.01062 1.22541 0.92667 0.98371 0.93723 1.20567 0.95552 0.86573 0.91305 1.44407 1.57418 1.18798 1.12864 1.19378 1.41557 0.92279 0.87224 0.92158 1.25734 1.01147 0.97393 0.99423 1.70310 1.41533 1.09290 1.35483 0.85385 0.79207 0.77964 0.78908 1.19361 1.21197 1.21870 1.21088 0.92498 0.94541 0.89925 1.22445 0.98931 0.89356 0.96645 1.21961 0.98428 0.98124 0.81495 1.20812 0.98890 1.00556 0.92758 1.21724 0.94782 1.01967 1.01865 0.91947 0.94200 0.92857 0.90982 0.90526 0.83250 0.89302 0.89242 0.89782 0.88287 0.95973 0.88868 0.97844 0.93792 0.93892 0.96774 0.92512 0.89742 0.95749 0.91663 0.92159 0.89398 0.89367 0.92588 0.92764 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.40 71.98 0.68 -1.80 16 2 C -0.10 -1.94 5.33 29.85 0.16 -1.78 16 3 C -0.02 -0.25 4.62 -17.62 -0.08 -0.33 16 4 C -0.23 -4.03 9.11 23.43 0.21 -3.82 16 5 C 0.55 13.53 7.65 86.57 0.66 14.19 16 6 O -0.57 -17.81 11.66 -4.08 -0.05 -17.85 16 7 N -0.62 -14.09 3.33 -816.13 -2.72 -16.81 16 8 C 0.11 1.66 6.07 86.72 0.53 2.19 16 9 C -0.12 -2.23 5.34 31.78 0.17 -2.06 16 10 C 0.07 1.83 2.71 46.30 0.13 1.96 16 11 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 12 N -0.53 -17.34 4.53 -861.95 -3.90 -21.24 16 13 C 0.06 2.01 5.48 86.38 0.47 2.49 16 14 C 0.19 8.89 5.52 86.35 0.48 9.37 16 15 N -0.61 -31.44 3.01 -698.13 -2.10 -33.55 16 16 C -0.27 -15.44 9.51 84.03 0.80 -14.64 16 17 H 0.06 3.36 7.97 -2.91 -0.02 3.34 16 18 C -0.04 -2.24 4.60 84.86 0.39 -1.85 16 19 N -0.92 -55.02 12.12 21.65 0.26 -54.76 16 20 Si 0.96 44.89 29.63 68.60 2.03 46.92 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 C 0.15 6.33 6.69 86.35 0.58 6.91 16 25 C 0.06 1.96 5.48 86.38 0.47 2.43 16 26 C 0.12 3.26 5.32 86.85 0.46 3.72 16 27 C -0.09 -0.83 6.09 29.85 0.18 -0.65 16 28 C -0.15 -1.13 9.89 71.98 0.71 -0.41 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.98 6.65 -2.38 -0.02 0.97 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.80 5.74 -2.39 -0.01 1.79 16 33 H 0.08 1.12 8.12 -2.38 -0.02 1.10 16 34 H 0.15 1.73 7.40 -2.91 -0.02 1.71 16 35 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.10 1.54 7.94 -2.39 -0.02 1.52 16 39 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.09 2.79 6.87 -2.39 -0.02 2.78 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.04 2.31 6.68 -2.38 -0.02 2.30 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 46 H 0.08 2.63 6.79 -2.39 -0.02 2.62 16 47 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.06 1.75 7.74 -2.38 -0.02 1.73 16 50 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.09 0.60 8.03 -2.39 -0.02 0.58 16 52 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 54 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 Total: -1.00 -69.82 412.73 1.37 -68.45 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.84 Total: 12.93 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 7.00 Total: 15.90 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -8.46 Total: -126.36 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.05 Total: -17.85 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -69.82 1.37 -68.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280680057.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.334 kcal (2) G-P(sol) polarization free energy of solvation -69.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds