Wall clock time and date at job start Tue Mar 31 2020 18:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46260 * 2 1 4 4 C 1.36932 * 119.99795 * 59.99982 * 3 2 1 5 5 H 1.07994 * 120.00411 * 0.02562 * 4 3 2 6 6 C 1.38815 * 119.99632 * 179.97438 * 4 3 2 7 7 N 1.31618 * 120.00291 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99906 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46998 * 270.00313 * 8 6 4 10 10 H 1.48501 * 109.47076 * 30.00056 * 8 6 4 11 11 H 1.48496 * 109.47139 * 150.00030 * 8 6 4 12 12 C 1.53039 * 109.46016 * 119.97331 * 2 1 3 13 13 C 1.53163 * 109.32821 * 181.38231 * 12 2 1 14 14 N 1.46929 * 108.77032 * 305.35705 * 13 12 2 15 15 C 1.34772 * 120.63306 * 233.59125 * 14 13 12 16 16 O 1.21282 * 120.00176 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99877 * 0.02562 * 15 14 13 18 18 H 1.08999 * 110.13260 * 332.85961 * 17 15 14 19 19 C 1.54805 * 110.14826 * 94.62775 * 17 15 14 20 20 C 1.55327 * 104.98962 * 115.47913 * 19 17 15 21 21 C 1.53918 * 102.08988 * 337.80186 * 20 19 17 22 22 H 1.09002 * 111.54320 * 281.07991 * 21 20 19 23 23 C 1.52365 * 113.26853 * 155.07297 * 21 20 19 24 24 C 1.53639 * 107.59765 * 185.07219 * 23 21 20 25 25 C 1.52824 * 110.61658 * 56.40788 * 24 23 21 26 26 C 1.53639 * 110.64213 * 306.13592 * 25 24 23 27 27 N 1.45532 * 107.85878 * 57.13054 * 26 25 24 28 28 C 1.46929 * 118.73729 * 53.60401 * 14 13 12 29 29 C 1.53043 * 109.45894 * 240.02876 * 2 1 3 30 30 H 1.09000 * 109.46950 * 59.99349 * 1 2 3 31 31 H 1.08993 * 109.47412 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46778 * 299.99847 * 1 2 3 33 33 H 0.96997 * 120.00003 * 240.00270 * 3 2 1 34 34 H 0.96998 * 120.00016 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.49834 * 301.32365 * 12 2 1 36 36 H 1.09005 * 109.49564 * 61.42276 * 12 2 1 37 37 H 1.08995 * 109.59219 * 185.57689 * 13 12 2 38 38 H 1.08998 * 109.59085 * 65.13743 * 13 12 2 39 39 H 1.09001 * 110.33503 * 234.36044 * 19 17 15 40 40 H 1.08996 * 110.33947 * 356.60173 * 19 17 15 41 41 H 1.09006 * 110.90784 * 219.60138 * 20 19 17 42 42 H 1.09007 * 110.90740 * 95.99861 * 20 19 17 43 43 H 1.08997 * 109.83602 * 65.55061 * 23 21 20 44 44 H 1.08997 * 109.89016 * 304.62224 * 23 21 20 45 45 H 1.09005 * 109.24659 * 296.11128 * 24 23 21 46 46 H 1.09003 * 109.21837 * 176.67840 * 24 23 21 47 47 H 1.08998 * 109.24104 * 185.83862 * 25 24 23 48 48 H 1.09003 * 109.21179 * 66.41257 * 25 24 23 49 49 H 1.09001 * 109.78484 * 297.53897 * 26 25 24 50 50 H 1.08997 * 109.82849 * 176.74738 * 26 25 24 51 51 H 1.09004 * 109.58831 * 186.60296 * 28 14 13 52 52 H 1.09000 * 109.58465 * 66.18510 * 28 14 13 53 53 H 1.09006 * 109.49431 * 298.58211 * 29 2 1 54 54 H 1.08997 * 109.49602 * 58.64419 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6872 2.2244 1.0270 5 1 1.0667 1.8710 1.8372 6 6 2.1502 3.5330 1.0272 7 7 2.9068 3.9636 0.0401 8 14 1.6993 4.6830 2.4286 9 1 0.4366 5.3922 2.1002 10 1 1.5155 3.8965 3.6748 11 1 2.7873 5.6744 2.6249 12 6 2.0399 -0.7209 1.2500 13 6 3.5711 -0.6890 1.2645 14 7 4.0676 -1.2494 0.0003 15 6 4.9615 -2.2580 0.0003 16 8 5.3641 -2.7117 -1.0499 17 6 5.4609 -2.8222 1.3055 18 1 5.4113 -2.0628 2.0859 19 6 4.6208 -4.0586 1.7082 20 6 5.6166 -5.2501 1.6716 21 6 6.7168 -4.7221 0.7336 22 1 6.4211 -4.7980 -0.3128 23 6 8.0719 -5.3791 0.9654 24 6 9.0918 -4.6724 0.0593 25 6 9.1076 -3.1697 0.3368 26 6 7.6922 -2.5830 0.2233 27 7 6.8353 -3.3013 1.1548 28 6 3.5713 -0.6891 -1.2641 29 6 2.0398 -0.7209 -1.2500 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.5757 1.6986 -0.7275 34 1 3.2300 4.8782 0.0401 35 1 1.6574 -0.2208 2.1398 36 1 1.6976 -1.7558 1.2381 37 1 3.9412 -1.2850 2.0986 38 1 3.9142 0.3404 1.3675 39 1 4.2182 -3.9320 2.7132 40 1 3.8137 -4.2174 0.9931 41 1 5.1439 -6.1395 1.2549 42 1 6.0169 -5.4532 2.6650 43 1 8.0189 -6.4368 0.7078 44 1 8.3646 -5.2669 2.0093 45 1 8.8244 -4.8426 -0.9836 46 1 10.0838 -5.0830 0.2475 47 1 9.7593 -2.6779 -0.3855 48 1 9.4895 -2.9946 1.3426 49 1 7.3204 -2.7104 -0.7934 50 1 7.7094 -1.5237 0.4796 51 1 3.9416 -1.2851 -2.0982 52 1 3.9145 0.3403 -1.3672 53 1 1.6975 -1.7557 -1.2383 54 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281500521.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:29 Heat of formation + Delta-G solvation = -35.495974 kcal Electronic energy + Delta-G solvation = -31731.978593 eV Core-core repulsion = 27895.651827 eV Total energy + Delta-G solvation = -3836.326766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11816 -40.39445 -38.80480 -36.13699 -35.85831 -34.18475 -33.23951 -32.21562 -30.88996 -30.30684 -29.33016 -28.31415 -25.90377 -24.73918 -24.28651 -23.91207 -22.79346 -22.08291 -21.05906 -20.54978 -19.38899 -18.96141 -18.36006 -17.25236 -16.66296 -16.49733 -16.42392 -16.14354 -15.67037 -15.44665 -15.28101 -15.18153 -14.97125 -14.78566 -14.49055 -14.11932 -14.04803 -13.82693 -13.67592 -13.46701 -13.22734 -13.08217 -12.83988 -12.73904 -12.68721 -12.58330 -12.51677 -12.30004 -12.15263 -12.10103 -11.95131 -11.80339 -11.72549 -11.57152 -11.45734 -11.25715 -11.23098 -11.13202 -11.02777 -10.81629 -9.64193 -9.20678 -8.89912 -7.85927 -5.11851 1.49569 1.50374 1.52011 1.57676 2.02607 2.61071 2.90613 3.44735 3.48508 3.53698 3.69244 3.82361 3.90814 3.96817 4.03418 4.06241 4.10588 4.17369 4.19867 4.29248 4.38410 4.42092 4.48081 4.55402 4.62708 4.65238 4.70867 4.73843 4.77524 4.86328 4.88077 4.94245 4.96853 5.01024 5.03445 5.06122 5.06544 5.07414 5.13713 5.17245 5.20275 5.26251 5.33438 5.34580 5.35768 5.51530 5.57381 5.65492 5.68669 5.96442 6.10836 6.35726 6.47635 7.12309 7.42852 8.19223 8.42208 9.37948 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.003236 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.005748 B = 8650.042718 C = 9167.106943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.188 3.812 3 N -0.725 5.725 4 C -0.209 4.209 5 H 0.080 0.920 6 C -0.078 4.078 7 N -0.973 5.973 8 Si 0.958 3.042 9 H -0.295 1.295 10 H -0.266 1.266 11 H -0.305 1.305 12 C -0.126 4.126 13 C 0.120 3.880 14 N -0.595 5.595 15 C 0.489 3.511 16 O -0.581 6.581 17 C 0.056 3.944 18 H 0.112 0.888 19 C -0.108 4.108 20 C -0.106 4.106 21 C 0.059 3.941 22 H 0.039 0.961 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.107 4.107 26 C 0.044 3.956 27 N -0.506 5.506 28 C 0.119 3.881 29 C -0.117 4.117 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.369 0.631 34 H 0.245 0.755 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.040 0.960 50 H 0.049 0.951 51 H 0.076 0.924 52 H 0.046 0.954 53 H 0.082 0.918 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 -21.665 4.541 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.098 3.902 3 N -0.366 5.366 4 C -0.341 4.341 5 H 0.098 0.902 6 C -0.269 4.269 7 N -0.625 5.625 8 Si 0.789 3.211 9 H -0.223 1.223 10 H -0.191 1.191 11 H -0.233 1.233 12 C -0.166 4.166 13 C -0.002 4.002 14 N -0.327 5.327 15 C 0.277 3.723 16 O -0.462 6.462 17 C -0.056 4.056 18 H 0.129 0.871 19 C -0.146 4.146 20 C -0.144 4.144 21 C -0.049 4.049 22 H 0.057 0.943 23 C -0.136 4.136 24 C -0.156 4.156 25 C -0.145 4.145 26 C -0.085 4.085 27 N -0.230 5.230 28 C -0.004 4.004 29 C -0.155 4.155 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.202 0.798 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.095 0.905 52 H 0.064 0.936 53 H 0.101 0.899 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.450 -21.751 4.627 23.154 hybrid contribution -0.466 2.064 -0.939 2.315 sum 5.985 -19.687 3.688 20.904 Atomic orbital electron populations 1.22134 0.96461 1.00772 1.00943 1.19853 0.92786 0.84197 0.93316 1.42704 1.60414 1.07530 1.25903 1.19437 1.22945 0.91541 1.00141 0.90246 1.25365 1.01943 0.99211 1.00417 1.69809 1.41713 1.16437 1.34518 0.85354 0.76258 0.79250 0.80252 1.22332 1.19063 1.23271 1.22204 0.94327 1.00410 0.99667 1.21714 0.95338 0.98596 0.84598 1.48291 1.42220 1.34245 1.07916 1.22196 0.78271 0.79126 0.92709 1.90577 1.58690 1.61868 1.35088 1.22573 0.90086 0.99728 0.93224 0.87076 1.22584 0.97127 0.91689 1.03238 1.22389 0.94541 0.96900 1.00545 1.22739 0.96946 0.87900 0.97291 0.94321 1.21507 0.92346 0.99019 1.00753 1.21569 1.00252 0.94626 0.99171 1.21544 0.94245 0.96327 1.02380 1.22157 0.94368 0.96885 0.95061 1.63330 1.08595 1.03724 1.47341 1.21367 0.94873 0.97601 0.86550 1.21979 0.93932 1.01130 0.98493 0.94319 0.91315 0.93753 0.79809 0.94659 0.91257 0.90345 0.88014 0.93129 0.87611 0.91879 0.89720 0.88760 0.90021 0.90269 0.93492 0.90112 0.91509 0.90977 0.94195 0.93202 0.90511 0.93562 0.89896 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 8.44 71.98 0.61 -4.06 16 2 C 0.19 6.53 0.74 3.63 0.00 6.53 16 3 N -0.73 -33.00 4.13 -303.23 -1.25 -34.25 16 4 C -0.21 -10.51 8.68 84.04 0.73 -9.78 16 5 H 0.08 3.82 6.70 -2.91 -0.02 3.80 16 6 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 7 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 8 Si 0.96 44.84 29.55 68.60 2.03 46.87 16 9 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.31 -14.80 7.11 99.48 0.71 -14.10 16 12 C -0.13 -3.80 4.70 30.66 0.14 -3.66 16 13 C 0.12 3.70 5.98 86.35 0.52 4.21 16 14 N -0.60 -19.16 2.97 -818.96 -2.43 -21.59 16 15 C 0.49 15.40 5.91 87.66 0.52 15.92 16 16 O -0.58 -21.60 12.46 -3.03 -0.04 -21.64 16 17 C 0.06 1.38 2.83 44.89 0.13 1.51 16 18 H 0.11 2.65 6.08 -2.39 -0.01 2.63 16 19 C -0.11 -2.01 6.62 32.01 0.21 -1.80 16 20 C -0.11 -1.73 6.61 31.70 0.21 -1.52 16 21 C 0.06 1.26 2.35 44.67 0.11 1.37 16 22 H 0.04 1.07 7.14 -2.39 -0.02 1.06 16 23 C -0.10 -1.65 5.68 30.60 0.17 -1.48 16 24 C -0.12 -2.14 5.94 30.75 0.18 -1.96 16 25 C -0.11 -2.28 6.06 30.75 0.19 -2.09 16 26 C 0.04 1.21 4.87 86.78 0.42 1.63 16 27 N -0.51 -12.51 4.60 -845.27 -3.89 -16.40 16 28 C 0.12 4.14 6.16 86.36 0.53 4.67 16 29 C -0.12 -3.68 4.96 30.67 0.15 -3.53 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.53 7.27 -2.39 -0.02 1.51 16 33 H 0.37 18.89 6.46 -92.71 -0.60 18.29 16 34 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.07 2.21 7.31 -2.39 -0.02 2.19 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.10 2.48 5.46 -2.39 -0.01 2.47 16 38 H 0.05 1.98 7.74 -2.39 -0.02 1.96 16 39 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.29 7.71 -2.39 -0.02 1.27 16 41 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.09 1.26 8.10 -2.38 -0.02 1.24 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 49 H 0.04 1.35 5.61 -2.39 -0.01 1.33 16 50 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.08 2.70 7.01 -2.38 -0.02 2.68 16 52 H 0.05 1.87 6.94 -2.39 -0.02 1.85 16 53 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 54 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -64.40 391.95 0.26 -64.14 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.28 Total: 38.58 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.29 Total: 2.16 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -7.29 Total: -130.11 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.40 0.26 -64.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281500521.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.640 kcal (2) G-P(sol) polarization free energy of solvation -64.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds