Wall clock time and date at job start Tue Mar 31 2020 19:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.27517 * 2 1 4 4 C 1.54590 * 110.31018 * 122.19680 * 2 1 3 5 5 C 1.54936 * 102.92224 * 140.87615 * 4 2 1 6 6 N 1.48540 * 103.22597 * 322.58328 * 5 4 2 7 7 C 1.46897 * 110.99949 * 159.71998 * 6 5 4 8 8 C 1.50698 * 109.47056 * 52.60749 * 7 6 5 9 9 O 1.21281 * 120.00016 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00113 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00069 * 179.72459 * 10 8 7 12 12 C 1.52998 * 115.54901 * 179.97438 * 11 10 8 13 13 C 1.53030 * 109.45993 * 85.60819 * 12 11 10 14 14 C 1.53195 * 109.31309 * 178.59727 * 13 12 11 15 15 N 1.46932 * 108.76255 * 54.66098 * 14 13 12 16 16 C 1.36932 * 120.63398 * 126.36282 * 15 14 13 17 17 H 1.08001 * 119.99905 * 331.85914 * 16 15 14 18 18 C 1.38819 * 120.00191 * 151.86246 * 16 15 14 19 19 N 1.31614 * 119.99708 * 343.06180 * 18 16 15 20 20 Si 1.86801 * 119.99885 * 163.06246 * 18 16 15 21 21 H 1.48498 * 109.47102 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47085 * 119.99969 * 20 18 16 23 23 H 1.48500 * 109.46661 * 240.00032 * 20 18 16 24 24 C 1.46922 * 118.73601 * 306.38004 * 15 14 13 25 25 C 1.53043 * 109.46034 * 325.55498 * 12 11 10 26 26 C 1.53005 * 117.49707 * 34.32671 * 11 10 8 27 27 C 1.52998 * 117.49634 * 325.66853 * 11 10 8 28 28 C 1.47903 * 105.81770 * 39.20877 * 6 5 4 29 29 H 1.09004 * 109.46978 * 182.08486 * 1 2 3 30 30 H 1.08999 * 109.47463 * 302.08520 * 1 2 3 31 31 H 1.09003 * 109.47397 * 62.08605 * 1 2 3 32 32 H 1.09002 * 110.72227 * 259.23160 * 4 2 1 33 33 H 1.08998 * 110.72295 * 22.51587 * 4 2 1 34 34 H 1.09000 * 110.66724 * 204.15495 * 5 4 2 35 35 H 1.08993 * 110.67047 * 81.01642 * 5 4 2 36 36 H 1.09000 * 109.47629 * 292.60774 * 7 6 5 37 37 H 1.08996 * 109.47162 * 172.60447 * 7 6 5 38 38 H 0.97003 * 119.99655 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.45995 * 205.58488 * 12 11 10 40 40 H 1.09003 * 109.50188 * 298.56424 * 13 12 11 41 41 H 1.09003 * 109.49824 * 58.66382 * 13 12 11 42 42 H 1.08998 * 109.59955 * 294.87036 * 14 13 12 43 43 H 1.09000 * 109.70499 * 174.50413 * 14 13 12 44 44 H 0.96997 * 120.00041 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.59053 * 293.82778 * 24 15 14 46 46 H 1.09002 * 109.70885 * 173.46739 * 24 15 14 47 47 H 1.09006 * 109.49939 * 301.33675 * 25 12 11 48 48 H 1.08997 * 109.50015 * 61.39725 * 25 12 11 49 49 H 1.08994 * 117.49755 * 0.02562 * 26 11 10 50 50 H 1.08997 * 117.49673 * 145.02407 * 26 11 10 51 51 H 1.09005 * 117.49591 * 214.98060 * 27 11 10 52 52 H 1.09000 * 117.49972 * 0.02562 * 27 11 10 53 53 H 1.09000 * 109.91875 * 94.02099 * 28 6 5 54 54 H 1.08996 * 109.91364 * 215.11599 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0666 -0.7725 1.2268 5 6 3.2855 -1.5353 0.6500 6 7 2.8313 -1.9229 -0.7101 7 6 3.9751 -2.2246 -1.5811 8 6 4.8664 -3.2359 -0.9074 9 8 4.5774 -3.6629 0.1904 10 7 5.9852 -3.6652 -1.5244 11 6 6.8548 -4.6439 -0.8669 12 6 8.0961 -5.0603 -1.6584 13 6 9.2258 -4.0614 -1.3978 14 6 10.4774 -4.5008 -2.1640 15 7 10.1307 -4.6625 -3.5826 16 6 10.8471 -4.0161 -4.5541 17 1 11.3377 -3.0802 -4.3307 18 6 10.9428 -4.5636 -5.8262 19 7 10.6460 -5.8309 -6.0212 20 14 11.4929 -3.5015 -7.2611 21 1 11.7646 -2.1228 -6.7809 22 1 12.7289 -4.0723 -7.8541 23 1 10.4218 -3.4651 -8.2890 24 6 9.0003 -5.5308 -3.9389 25 6 7.7653 -5.0801 -3.1525 26 6 6.1874 -5.7052 0.0101 27 6 6.9806 -4.5664 0.6559 28 6 2.0644 -0.7671 -1.2237 29 1 -0.3633 -1.0270 0.0374 30 1 -0.3634 0.5459 0.8707 31 1 -0.3634 0.4811 -0.9081 32 1 2.3791 -0.0825 2.0106 33 1 1.3172 -1.4698 1.6015 34 1 3.5046 -2.4194 1.2488 35 1 4.1563 -0.8823 0.5931 36 1 4.5395 -1.3113 -1.7693 37 1 3.6149 -2.6304 -2.5264 38 1 6.2164 -3.3234 -2.4023 39 1 8.4110 -6.0551 -1.3430 40 1 8.9209 -3.0710 -1.7359 41 1 9.4451 -4.0304 -0.3305 42 1 10.8361 -5.4496 -1.7650 43 1 11.2553 -3.7441 -2.0621 44 1 10.7133 -6.2136 -6.9099 45 1 9.2384 -6.5636 -3.6846 46 1 8.8007 -5.4544 -5.0078 47 1 6.9448 -5.7743 -3.3343 48 1 7.4737 -4.0802 -3.4738 49 1 5.1013 -5.6756 0.0974 50 1 6.6332 -6.6998 0.0236 51 1 7.9479 -4.8123 1.0942 52 1 6.4160 -3.7876 1.1686 53 1 2.7161 -0.1207 -1.8115 54 1 1.2348 -1.1158 -1.8386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284847206.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:57 Heat of formation + Delta-G solvation = 2.124222 kcal Electronic energy + Delta-G solvation = -30305.918568 eV Core-core repulsion = 26471.223136 eV Total energy + Delta-G solvation = -3834.695432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.69887 -40.15639 -39.04858 -37.35572 -34.61095 -34.47055 -33.79744 -32.17125 -31.34365 -30.66709 -28.50742 -27.37423 -25.86296 -24.44787 -24.00651 -22.98363 -22.70375 -21.64549 -21.22810 -20.95438 -20.17835 -18.76734 -18.40002 -17.11012 -16.91411 -16.70279 -16.41523 -16.06876 -15.68223 -15.31905 -15.12561 -15.00934 -14.80256 -14.69199 -14.49536 -14.41614 -14.22452 -14.09229 -13.88994 -13.57921 -13.13131 -12.98351 -12.94667 -12.63360 -12.59243 -12.49538 -12.40252 -12.31726 -12.07112 -11.95878 -11.86562 -11.76003 -11.73619 -11.62974 -11.48964 -11.47803 -11.10351 -10.89864 -10.52743 -10.36558 -9.54518 -9.36700 -8.65447 -7.85751 -5.30753 1.46544 1.49063 1.58549 1.58977 2.01893 2.52429 2.99215 3.07120 3.28434 3.53709 3.61805 3.69207 3.73621 3.82825 3.96206 4.00122 4.03579 4.23918 4.24764 4.34182 4.37136 4.38988 4.50482 4.54046 4.56075 4.65738 4.66153 4.71104 4.76078 4.83997 4.87556 4.94500 4.95068 5.01807 5.03328 5.08677 5.18805 5.19554 5.24677 5.25474 5.27576 5.28298 5.38461 5.39401 5.43929 5.55031 5.67098 5.68265 5.79420 5.88904 5.95987 6.41399 6.58794 7.17398 7.28047 7.89027 8.40511 9.20530 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.002570 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.033862 B =10893.408065 C =12040.092999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.118 4.118 5 C 0.034 3.966 6 N -0.515 5.515 7 C 0.028 3.972 8 C 0.510 3.490 9 O -0.547 6.547 10 N -0.688 5.688 11 C 0.112 3.888 12 C -0.032 4.032 13 C -0.109 4.109 14 C 0.139 3.861 15 N -0.609 5.609 16 C -0.258 4.258 17 H 0.065 0.935 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.267 1.267 22 H -0.295 1.295 23 H -0.289 1.289 24 C 0.177 3.823 25 C -0.117 4.117 26 C -0.177 4.177 27 C -0.168 4.168 28 C 0.036 3.964 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.411 0.589 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.012 0.988 43 H 0.052 0.948 44 H 0.249 0.751 45 H -0.007 1.007 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.103 0.897 52 H 0.093 0.907 53 H 0.053 0.947 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.699 10.574 12.418 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.101 0.899 4 C -0.156 4.156 5 C -0.093 4.093 6 N -0.240 5.240 7 C -0.103 4.103 8 C 0.297 3.703 9 O -0.425 6.425 10 N -0.339 5.339 11 C 0.024 3.976 12 C -0.051 4.051 13 C -0.148 4.148 14 C 0.014 3.986 15 N -0.333 5.333 16 C -0.388 4.388 17 H 0.083 0.917 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.216 1.216 24 C 0.051 3.949 25 C -0.156 4.156 26 C -0.215 4.215 27 C -0.207 4.207 28 C -0.091 4.091 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.249 0.751 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.012 0.988 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.111 0.889 50 H 0.117 0.883 51 H 0.121 0.879 52 H 0.112 0.888 53 H 0.071 0.929 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.203 9.745 13.040 24.420 hybrid contribution 1.282 0.790 -1.540 2.154 sum -16.921 10.535 11.500 23.012 Atomic orbital electron populations 1.21789 0.93496 1.01870 1.02320 1.22008 0.97171 0.99045 0.93823 0.89942 1.22608 0.96966 0.98583 0.97476 1.23377 0.96163 0.99176 0.90596 1.64667 1.19642 1.37390 1.02336 1.22272 0.91996 0.97922 0.98099 1.20852 0.80943 0.82632 0.85830 1.90592 1.72817 1.58026 1.21073 1.45405 1.23075 1.43381 1.22051 1.20677 0.92795 0.94083 0.90020 1.20606 0.91305 0.99137 0.94077 1.21874 0.94936 0.98277 0.99725 1.21071 0.95620 0.97606 0.84301 1.44324 1.32871 1.54777 1.01306 1.19522 1.26982 1.01036 0.91296 0.91691 1.25771 1.01278 0.96185 1.01399 1.70185 1.54511 1.12027 1.21418 0.85257 0.76986 0.78856 0.79645 1.19103 1.22249 1.21610 1.20570 0.85572 0.90611 0.98101 1.21965 0.98127 1.00937 0.94578 1.23388 1.00223 0.94384 1.03503 1.23298 1.01557 1.01489 0.94310 1.23111 0.98149 0.90473 0.97405 0.92995 0.91967 0.91818 0.90265 0.91208 0.89480 0.95012 0.90316 0.86305 0.75105 0.90637 0.92612 0.90511 0.96958 0.92927 0.94182 0.98846 0.92753 0.91780 0.92245 0.88942 0.88289 0.87903 0.88816 0.92911 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.90 71.98 0.64 -0.92 16 2 C -0.10 -1.37 3.59 -9.92 -0.04 -1.41 16 3 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.12 -1.92 6.61 31.80 0.21 -1.71 16 5 C 0.03 0.72 5.30 86.65 0.46 1.18 16 6 N -0.52 -10.51 5.26 -887.58 -4.67 -15.18 16 7 C 0.03 0.53 5.52 85.56 0.47 1.01 16 8 C 0.51 12.43 7.24 87.66 0.64 13.06 16 9 O -0.55 -16.03 9.00 -3.03 -0.03 -16.06 16 10 N -0.69 -16.56 5.38 -422.91 -2.28 -18.84 16 11 C 0.11 2.96 2.48 3.60 0.01 2.97 16 12 C -0.03 -0.96 2.28 -10.77 -0.02 -0.98 16 13 C -0.11 -3.39 5.22 30.67 0.16 -3.23 16 14 C 0.14 5.53 6.52 86.36 0.56 6.10 16 15 N -0.61 -29.46 2.99 -699.07 -2.09 -31.55 16 16 C -0.26 -13.82 9.58 84.04 0.81 -13.02 16 17 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 18 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 19 N -0.94 -54.50 11.19 21.65 0.24 -54.26 16 20 Si 0.96 43.97 29.59 68.60 2.03 46.00 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 C 0.18 8.18 5.30 86.36 0.46 8.64 16 25 C -0.12 -3.98 4.83 30.67 0.15 -3.84 16 26 C -0.18 -4.72 9.37 30.62 0.29 -4.44 16 27 C -0.17 -4.34 8.91 30.62 0.27 -4.07 16 28 C 0.04 0.55 6.35 86.45 0.55 1.10 16 29 H 0.05 0.68 8.11 -2.38 -0.02 0.66 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.21 7.84 -2.39 -0.02 1.19 16 34 H 0.09 2.31 5.97 -2.39 -0.01 2.29 16 35 H 0.03 0.68 8.02 -2.39 -0.02 0.66 16 36 H 0.08 1.27 7.81 -2.39 -0.02 1.25 16 37 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.41 9.10 6.67 -92.71 -0.62 8.48 16 39 H 0.08 2.34 7.90 -2.39 -0.02 2.32 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 2.04 7.25 -2.39 -0.02 2.02 16 42 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 43 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 44 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 45 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.05 2.87 6.06 -2.39 -0.01 2.85 16 47 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 48 H 0.06 1.94 6.50 -2.39 -0.02 1.92 16 49 H 0.09 2.78 6.37 -2.39 -0.02 2.76 16 50 H 0.10 2.45 8.05 -2.39 -0.02 2.43 16 51 H 0.10 2.40 7.61 -2.38 -0.02 2.38 16 52 H 0.09 2.66 6.38 -2.39 -0.02 2.65 16 53 H 0.05 0.72 7.57 -2.39 -0.02 0.70 16 54 H 0.09 1.24 7.69 -2.39 -0.02 1.23 16 Total: -1.00 -63.88 400.85 -0.51 -64.39 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.25 Total: 27.42 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.03 Total: -1.93 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -8.80 Total: -119.82 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.03 Total: -16.06 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.88 -0.51 -64.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284847206.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.517 kcal (2) G-P(sol) polarization free energy of solvation -63.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds