Wall clock time and date at job start Tue Mar 31 2020 19:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08989 * 110.87882 * 2 1 4 4 C 1.55150 * 110.98942 * 236.15560 * 2 1 3 5 5 C 1.54318 * 103.01959 * 206.25619 * 4 2 1 6 6 N 1.47451 * 107.23466 * 22.28308 * 5 4 2 7 7 C 1.46899 * 110.99732 * 123.25490 * 6 5 4 8 8 C 1.50700 * 109.46959 * 69.87639 * 7 6 5 9 9 O 1.21278 * 120.00162 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00162 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00041 * 180.02562 * 10 8 7 12 12 C 1.53008 * 115.54967 * 179.91296 * 11 10 8 13 13 C 1.53039 * 109.45748 * 85.64823 * 12 11 10 14 14 C 1.53195 * 109.31043 * 178.61612 * 13 12 11 15 15 N 1.46931 * 108.77642 * 54.63415 * 14 13 12 16 16 C 1.36929 * 120.63146 * 126.36808 * 15 14 13 17 17 H 1.08000 * 120.00102 * 331.86407 * 16 15 14 18 18 C 1.38813 * 119.99888 * 151.85951 * 16 15 14 19 19 N 1.31620 * 119.99848 * 343.07109 * 18 16 15 20 20 Si 1.86802 * 120.00011 * 163.07856 * 18 16 15 21 21 H 1.48493 * 109.47532 * 59.99815 * 20 18 16 22 22 H 1.48500 * 109.47250 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46543 * 299.99384 * 20 18 16 24 24 C 1.46929 * 118.73657 * 306.39272 * 15 14 13 25 25 C 1.53040 * 109.45790 * 325.58004 * 12 11 10 26 26 C 1.53000 * 117.50428 * 34.20298 * 11 10 8 27 27 C 1.53004 * 60.00137 * 252.51138 * 26 11 10 28 28 C 1.47846 * 108.56362 * 0.98941 * 6 5 4 29 29 H 1.09000 * 109.47338 * 182.39499 * 1 2 3 30 30 H 1.09006 * 109.46610 * 302.38587 * 1 2 3 31 31 H 1.08989 * 109.47283 * 62.38712 * 1 2 3 32 32 H 1.08993 * 110.70233 * 87.87028 * 4 2 1 33 33 H 1.08997 * 110.85425 * 324.70714 * 4 2 1 34 34 H 1.08999 * 109.89130 * 262.88058 * 5 4 2 35 35 H 1.09004 * 109.88639 * 141.68819 * 5 4 2 36 36 H 1.09000 * 109.46923 * 189.87548 * 7 6 5 37 37 H 1.08997 * 109.47570 * 309.87320 * 7 6 5 38 38 H 0.97005 * 119.99545 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.46072 * 205.60677 * 12 11 10 40 40 H 1.08995 * 109.49635 * 298.56448 * 13 12 11 41 41 H 1.08994 * 109.49954 * 58.66636 * 13 12 11 42 42 H 1.09003 * 109.58702 * 294.84877 * 14 13 12 43 43 H 1.08998 * 109.70706 * 174.48873 * 14 13 12 44 44 H 0.97004 * 119.99507 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.58771 * 293.82224 * 24 15 14 46 46 H 1.08994 * 109.70177 * 173.46626 * 24 15 14 47 47 H 1.08997 * 109.49518 * 301.34030 * 25 12 11 48 48 H 1.08998 * 109.49472 * 61.40156 * 25 12 11 49 49 H 1.08997 * 117.49595 * 359.97438 * 26 11 10 50 50 H 1.08994 * 117.50291 * 145.02582 * 26 11 10 51 51 H 1.08998 * 117.49811 * 252.50778 * 27 26 11 52 52 H 1.08995 * 117.49923 * 107.48568 * 27 26 11 53 53 H 1.09000 * 110.37119 * 94.73342 * 28 6 5 54 54 H 1.09003 * 110.37262 * 217.07071 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9184 1.0183 0.0000 4 6 2.0857 -0.8068 -1.2031 5 6 3.4691 -1.2710 -0.7011 6 7 3.4313 -1.2424 0.7726 7 6 3.7610 -2.5596 1.3333 8 6 5.2205 -2.8536 1.0999 9 8 5.9172 -2.0458 0.5230 10 7 5.7517 -4.0144 1.5324 11 6 7.1705 -4.3000 1.3061 12 6 7.6664 -5.6453 1.8406 13 6 7.4057 -6.7352 0.7984 14 6 7.9345 -8.0741 1.3225 15 7 7.3322 -8.3389 2.6363 16 6 6.6770 -9.5165 2.8788 17 1 6.2000 -10.0462 2.0674 18 6 6.6258 -10.0296 4.1676 19 7 7.4618 -9.5904 5.0844 20 14 5.3707 -11.3436 4.6007 21 1 5.5905 -12.5387 3.7473 22 1 5.5212 -11.7203 6.0292 23 1 4.0019 -10.8156 4.3702 24 6 7.4457 -7.3157 3.6846 25 6 6.9224 -5.9854 3.1340 26 6 8.1442 -3.1205 1.3481 27 6 7.7982 -3.7797 0.0113 28 6 2.0849 -0.8065 1.2005 29 1 -0.3634 -1.0267 0.0429 30 1 -0.3633 0.5505 0.8679 31 1 -0.3633 0.4763 -0.9105 32 1 2.1883 -0.1685 -2.0806 33 1 1.4485 -1.6631 -1.4236 34 1 4.2420 -0.5942 -1.0653 35 1 3.6680 -2.2852 -1.0474 36 1 3.5569 -2.5601 2.4040 37 1 3.1542 -3.3236 0.8474 38 1 5.1945 -4.6604 1.9942 39 1 8.7358 -5.5841 2.0421 40 1 6.3343 -6.8141 0.6147 41 1 7.9168 -6.4806 -0.1300 42 1 9.0190 -8.0254 1.4210 43 1 7.6659 -8.8718 0.6300 44 1 7.4258 -9.9487 5.9851 45 1 8.4904 -7.2051 3.9756 46 1 6.8543 -7.6104 4.5514 47 1 7.0895 -5.1969 3.8678 48 1 5.8554 -6.0708 2.9283 49 1 7.7289 -2.1320 1.5437 50 1 9.1381 -3.3026 1.7566 51 1 8.5645 -4.3954 -0.4594 52 1 7.1553 -3.2248 -0.6719 53 1 1.4523 -1.6710 1.4018 54 1 2.1545 -0.1721 2.0842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284847208.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:01 Heat of formation + Delta-G solvation = -1.497028 kcal Electronic energy + Delta-G solvation = -30232.534224 eV Core-core repulsion = 26397.681763 eV Total energy + Delta-G solvation = -3834.852461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62620 -40.15674 -39.08267 -37.33729 -34.59670 -34.44190 -33.76156 -32.16233 -31.34087 -30.71473 -28.60614 -27.36868 -25.89472 -24.45291 -24.00314 -22.99064 -22.62092 -21.49670 -21.29221 -21.01665 -20.17010 -18.74074 -18.26050 -17.37880 -17.00976 -16.76745 -16.15186 -15.94670 -15.74477 -15.35821 -15.31439 -14.95804 -14.74682 -14.65465 -14.53570 -14.29988 -14.12927 -13.96543 -13.88816 -13.62983 -13.12935 -13.11108 -12.95305 -12.92482 -12.58566 -12.50596 -12.33908 -12.21578 -12.06846 -11.96492 -11.87548 -11.86310 -11.76500 -11.58339 -11.51766 -11.47609 -11.11175 -10.92017 -10.53084 -10.48677 -9.51157 -9.28488 -8.64875 -7.85038 -5.30168 1.48778 1.50128 1.57165 1.63447 2.03105 2.53212 2.99305 3.03712 3.28936 3.54870 3.61980 3.66882 3.73320 3.77379 3.95027 3.99465 4.03924 4.23857 4.26761 4.30851 4.37113 4.37833 4.48994 4.51150 4.54714 4.59702 4.70072 4.72140 4.76495 4.83500 4.84655 4.86016 4.95455 4.98523 5.03189 5.06733 5.09579 5.19665 5.20697 5.25463 5.27946 5.29498 5.38450 5.39669 5.44774 5.55048 5.66646 5.68013 5.79755 5.92443 5.99531 6.41777 6.62459 7.17927 7.31880 7.89579 8.41222 9.20977 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002637 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.058419 B =10614.687981 C =11924.317627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.080 0.920 4 C -0.135 4.135 5 C 0.054 3.946 6 N -0.531 5.531 7 C 0.034 3.966 8 C 0.509 3.491 9 O -0.548 6.548 10 N -0.690 5.690 11 C 0.113 3.887 12 C -0.032 4.032 13 C -0.109 4.109 14 C 0.140 3.860 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.065 0.935 18 C -0.050 4.050 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.276 1.276 24 C 0.177 3.823 25 C -0.117 4.117 26 C -0.177 4.177 27 C -0.169 4.169 28 C 0.045 3.955 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.012 0.988 43 H 0.052 0.948 44 H 0.249 0.751 45 H -0.007 1.007 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.103 0.897 52 H 0.091 0.909 53 H 0.059 0.941 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 18.214 -10.250 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 H 0.098 0.902 4 C -0.174 4.174 5 C -0.073 4.073 6 N -0.256 5.256 7 C -0.097 4.097 8 C 0.296 3.704 9 O -0.426 6.426 10 N -0.342 5.342 11 C 0.026 3.974 12 C -0.051 4.051 13 C -0.148 4.148 14 C 0.014 3.986 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.083 0.917 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.202 1.202 24 C 0.052 3.948 25 C -0.156 4.156 26 C -0.216 4.216 27 C -0.208 4.208 28 C -0.082 4.082 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.249 0.751 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.011 0.989 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.109 0.891 50 H 0.118 0.882 51 H 0.121 0.879 52 H 0.110 0.890 53 H 0.077 0.923 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.798 19.059 -10.314 24.212 hybrid contribution -0.835 -1.804 0.544 2.061 sum -11.633 17.254 -9.770 22.989 Atomic orbital electron populations 1.21684 0.92936 1.02268 1.02595 1.22262 0.96595 0.99237 0.93581 0.90206 1.22885 0.95327 1.00359 0.98784 1.22671 0.97676 1.00022 0.86956 1.63224 1.28656 1.24936 1.08753 1.22186 0.91931 0.92123 1.03442 1.20947 0.90633 0.80707 0.78075 1.90636 1.62470 1.47479 1.42000 1.45417 1.09452 1.19988 1.59333 1.20666 0.80705 0.94276 1.01790 1.20607 0.99538 0.90020 0.94952 1.21874 1.01060 0.94313 0.97573 1.21068 0.94570 0.95842 0.87094 1.44309 1.63655 1.15561 1.09738 1.19458 1.25852 0.99816 0.93988 0.91707 1.25772 1.00215 1.00745 0.97815 1.70181 1.37379 1.47027 1.03529 0.85383 0.79579 0.79336 0.76390 1.20385 1.22240 1.20189 1.20571 0.96332 0.86429 0.91507 1.21963 0.99523 0.97588 0.96522 1.23374 0.99441 0.97654 1.01114 1.23274 1.03034 1.03075 0.91389 1.23218 0.87117 0.99023 0.98842 0.92427 0.91728 0.91772 0.90090 0.90797 0.92077 0.93995 0.86342 0.90272 0.75134 0.90655 0.92598 0.90551 0.96981 0.92918 0.94168 0.98853 0.92707 0.91763 0.92236 0.89081 0.88227 0.87878 0.89020 0.92259 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.30 71.98 0.67 -0.62 16 2 C -0.10 -1.27 3.63 -9.41 -0.03 -1.30 16 3 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.14 -1.93 6.41 31.78 0.20 -1.73 16 5 C 0.05 1.10 5.65 86.64 0.49 1.59 16 6 N -0.53 -10.82 4.85 -890.07 -4.32 -15.14 16 7 C 0.03 0.66 5.03 85.56 0.43 1.09 16 8 C 0.51 12.85 7.18 87.66 0.63 13.48 16 9 O -0.55 -17.10 11.02 -3.02 -0.03 -17.13 16 10 N -0.69 -17.04 5.39 -422.91 -2.28 -19.31 16 11 C 0.11 3.08 2.48 3.61 0.01 3.08 16 12 C -0.03 -0.97 2.28 -10.76 -0.02 -0.99 16 13 C -0.11 -3.43 5.22 30.67 0.16 -3.27 16 14 C 0.14 5.58 6.52 86.36 0.56 6.14 16 15 N -0.61 -29.56 2.99 -699.08 -2.09 -31.65 16 16 C -0.26 -14.00 9.58 84.03 0.81 -13.19 16 17 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 18 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 19 N -0.94 -54.51 11.19 21.65 0.24 -54.26 16 20 Si 0.96 43.90 29.59 68.60 2.03 45.93 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.18 8.21 5.30 86.36 0.46 8.67 16 25 C -0.12 -4.01 4.83 30.67 0.15 -3.86 16 26 C -0.18 -4.90 9.36 30.60 0.29 -4.61 16 27 C -0.17 -4.54 8.91 30.60 0.27 -4.27 16 28 C 0.04 0.67 6.15 86.77 0.53 1.20 16 29 H 0.06 0.53 8.10 -2.39 -0.02 0.51 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.96 8.04 -2.39 -0.02 0.94 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.04 0.90 7.31 -2.38 -0.02 0.88 16 36 H 0.12 1.87 8.07 -2.39 -0.02 1.85 16 37 H 0.08 1.28 7.96 -2.39 -0.02 1.26 16 38 H 0.41 9.24 6.66 -92.70 -0.62 8.62 16 39 H 0.08 2.36 7.90 -2.39 -0.02 2.34 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 2.06 7.24 -2.39 -0.02 2.05 16 42 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 45 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 46 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 1.95 6.50 -2.39 -0.02 1.94 16 49 H 0.09 2.84 6.37 -2.39 -0.02 2.82 16 50 H 0.10 2.53 8.05 -2.39 -0.02 2.51 16 51 H 0.10 2.49 7.60 -2.39 -0.02 2.47 16 52 H 0.09 2.73 6.38 -2.39 -0.02 2.72 16 53 H 0.06 0.76 7.67 -2.39 -0.02 0.74 16 54 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -65.12 404.58 -0.18 -65.31 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.25 Total: 27.19 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 6.02 Total: -0.93 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -8.45 Total: -120.37 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.03 Total: -17.13 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -65.12 -0.18 -65.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284847208.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.810 kcal (2) G-P(sol) polarization free energy of solvation -65.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds