Wall clock time and date at job start Tue Mar 31 2020 19:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 N 1.46909 * 109.47083 * 179.97438 * 3 2 1 5 5 C 1.46903 * 110.99911 * 66.04107 * 4 3 2 6 6 C 1.46896 * 110.99824 * 189.99641 * 4 3 2 7 7 C 1.50706 * 109.46783 * 169.99799 * 6 4 3 8 8 O 1.21275 * 119.99995 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99767 * 179.72467 * 7 6 4 10 10 C 1.49465 * 125.97239 * 180.27474 * 9 7 6 11 11 C 1.48555 * 103.90668 * 175.56535 * 10 9 7 12 12 H 1.08995 * 104.28128 * 287.56318 * 11 10 9 13 13 C 1.56687 * 103.42879 * 33.60140 * 11 10 9 14 14 H 1.08994 * 114.17054 * 70.44820 * 13 11 10 15 15 C 1.49387 * 125.97299 * 359.96659 * 9 7 6 16 16 C 1.53757 * 101.00949 * 192.13587 * 13 11 10 17 17 H 1.08999 * 113.68439 * 154.46382 * 16 13 11 18 18 C 1.53937 * 108.95430 * 26.13622 * 16 13 11 19 19 C 1.52073 * 109.87816 * 284.44165 * 18 16 13 20 20 C 1.49506 * 130.88516 * 164.09378 * 11 10 9 21 21 H 1.09000 * 114.04679 * 21.01705 * 20 11 10 22 22 C 1.56647 * 108.17413 * 253.95870 * 20 11 10 23 23 N 1.48551 * 105.80274 * 291.64447 * 22 20 11 24 24 C 1.36942 * 123.38538 * 214.61057 * 23 22 20 25 25 H 1.08008 * 119.99625 * 160.13195 * 24 23 22 26 26 C 1.38805 * 120.00583 * 340.12527 * 24 23 22 27 27 N 1.31622 * 120.00033 * 349.81733 * 26 24 23 28 28 Si 1.86798 * 120.00171 * 169.80898 * 26 24 23 29 29 H 1.48499 * 109.47198 * 60.00554 * 28 26 24 30 30 H 1.48506 * 109.46921 * 180.02562 * 28 26 24 31 31 H 1.48500 * 109.47048 * 300.00195 * 28 26 24 32 32 H 1.09004 * 109.46512 * 60.00655 * 1 2 3 33 33 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47583 * 300.00915 * 1 2 3 35 35 H 1.08999 * 109.47583 * 239.99085 * 2 1 3 36 36 H 1.09009 * 109.46600 * 119.99803 * 2 1 3 37 37 H 1.08991 * 109.47648 * 59.99752 * 3 2 1 38 38 H 1.08996 * 109.46999 * 299.99404 * 3 2 1 39 39 H 1.08998 * 109.46820 * 183.95353 * 5 4 3 40 40 H 1.09002 * 109.47142 * 303.95743 * 5 4 3 41 41 H 1.08996 * 109.46888 * 63.95534 * 5 4 3 42 42 H 1.09006 * 109.47232 * 50.00182 * 6 4 3 43 43 H 1.08993 * 109.47377 * 289.99511 * 6 4 3 44 44 H 1.08998 * 110.54555 * 294.17520 * 10 9 7 45 45 H 1.09001 * 110.54147 * 56.81873 * 10 9 7 46 46 H 1.08998 * 110.75885 * 271.47085 * 15 9 7 47 47 H 1.08997 * 110.76145 * 34.85249 * 15 9 7 48 48 H 1.09004 * 109.55745 * 43.96372 * 18 16 13 49 49 H 1.08999 * 109.55827 * 164.29551 * 18 16 13 50 50 H 1.09004 * 109.34405 * 279.37848 * 19 18 16 51 51 H 1.09008 * 111.21511 * 157.49396 * 19 18 16 52 52 H 1.09000 * 110.05354 * 172.77688 * 22 20 11 53 53 H 1.09007 * 110.75811 * 50.88311 * 22 20 11 54 54 H 0.96994 * 120.00408 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0361 0.8853 -1.2524 6 6 4.0354 2.7930 0.2387 7 6 5.5217 2.7182 0.4767 8 8 6.0866 1.6453 0.4511 9 7 6.2238 3.8440 0.7131 10 6 7.6957 3.9253 0.9596 11 6 7.9628 5.3839 1.0485 12 1 7.8665 5.7380 0.0222 13 6 6.6591 5.9532 1.7053 14 1 6.5356 5.6877 2.7551 15 6 5.6679 5.2295 0.7683 16 6 6.8535 7.4623 1.4837 17 1 5.9199 8.0240 1.4523 18 6 7.7538 7.6751 0.2534 19 6 9.1997 7.3688 0.6115 20 6 9.1426 6.1321 1.5811 21 1 10.0579 5.5422 1.6289 22 6 8.7399 6.7643 2.9566 23 7 7.7401 7.8167 2.6410 24 6 7.6386 8.9923 3.3359 25 1 7.1388 9.8406 2.8918 26 6 8.1778 9.0938 4.6109 27 7 8.6064 8.0154 5.2320 28 14 8.2956 10.7610 5.4452 29 1 6.9362 11.3424 5.5834 30 1 8.9044 10.5995 6.7900 31 1 9.1402 11.6662 4.6253 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5140 0.8899 35 1 1.8934 -0.5140 -0.8899 36 1 1.8933 -0.5139 0.8901 37 1 1.6767 1.9563 0.8899 38 1 1.6768 1.9562 -0.8900 39 1 5.1233 0.8320 -1.1973 40 1 3.6304 -0.1150 -1.4042 41 1 3.7454 1.5255 -2.0852 42 1 3.5486 3.2237 1.1137 43 1 3.8380 3.4186 -0.6317 44 1 7.9547 3.4312 1.8960 45 1 8.2474 3.4832 0.1299 46 1 5.6662 5.6848 -0.2220 47 1 4.6650 5.2267 1.1951 48 1 7.4405 7.0061 -0.5482 49 1 7.6761 8.7096 -0.0811 50 1 9.6349 8.2279 1.1222 51 1 9.7828 7.1245 -0.2765 52 1 9.6132 7.2092 3.4335 53 1 8.2983 6.0137 3.6123 54 1 8.9828 8.0862 6.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316724860.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:01 Heat of formation + Delta-G solvation = 34.510996 kcal Electronic energy + Delta-G solvation = -30727.369671 eV Core-core repulsion = 26894.078635 eV Total energy + Delta-G solvation = -3833.291036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.58818 -40.55889 -38.34918 -37.18229 -35.01776 -34.08233 -32.59202 -31.74314 -31.45134 -29.69874 -28.51665 -27.84484 -27.17620 -25.10497 -23.80712 -23.40126 -22.49597 -21.87335 -21.64165 -20.19785 -19.06442 -18.20120 -18.06617 -17.41875 -16.90005 -16.81606 -16.48039 -16.12186 -15.98482 -15.86079 -15.66161 -15.02517 -14.79019 -14.55605 -14.31594 -14.16319 -13.85606 -13.76121 -13.48755 -13.11070 -12.95197 -12.88500 -12.80789 -12.72358 -12.65727 -12.53659 -12.45021 -12.43523 -12.32769 -12.16130 -12.10794 -11.95105 -11.93786 -11.77202 -11.44525 -11.21827 -10.77205 -10.63802 -10.52737 -10.36325 -9.67431 -9.27627 -8.65047 -7.78924 -5.16841 1.47521 1.49190 1.55248 1.65397 1.79169 2.52764 2.95288 3.28421 3.35465 3.46561 3.59773 3.67111 3.97455 4.09410 4.13425 4.15717 4.22108 4.29670 4.29975 4.35199 4.44804 4.49657 4.50641 4.52522 4.54092 4.57163 4.64829 4.68337 4.70141 4.81303 4.85072 4.88771 4.89723 4.91334 5.00727 5.08954 5.10532 5.17628 5.24664 5.29125 5.31481 5.36967 5.43992 5.45638 5.52749 5.61662 5.69536 5.73231 5.87690 5.94810 6.11583 6.32608 6.55346 7.15983 7.19936 7.84565 8.48919 9.28932 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.002585 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.721190 B =10827.302739 C =11544.183527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.057 3.943 4 N -0.549 5.549 5 C 0.023 3.977 6 C 0.047 3.953 7 C 0.524 3.476 8 O -0.571 6.571 9 N -0.625 5.625 10 C 0.140 3.860 11 C -0.128 4.128 12 H 0.095 0.905 13 C -0.109 4.109 14 H 0.061 0.939 15 C 0.116 3.884 16 C 0.165 3.835 17 H 0.085 0.915 18 C -0.119 4.119 19 C -0.092 4.092 20 C -0.091 4.091 21 H 0.090 0.910 22 C 0.200 3.800 23 N -0.615 5.615 24 C -0.235 4.235 25 H 0.074 0.926 26 C -0.062 4.062 27 N -0.947 5.947 28 Si 0.964 3.036 29 H -0.277 1.277 30 H -0.302 1.302 31 H -0.281 1.281 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.057 0.943 50 H 0.039 0.961 51 H 0.076 0.924 52 H 0.031 0.969 53 H -0.009 1.009 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -9.521 -16.401 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.070 4.070 4 N -0.274 5.274 5 C -0.125 4.125 6 C -0.083 4.083 7 C 0.313 3.687 8 O -0.450 6.450 9 N -0.360 5.360 10 C 0.018 3.982 11 C -0.146 4.146 12 H 0.113 0.887 13 C -0.129 4.129 14 H 0.079 0.921 15 C -0.005 4.005 16 C 0.060 3.940 17 H 0.103 0.897 18 C -0.157 4.157 19 C -0.130 4.130 20 C -0.111 4.111 21 H 0.108 0.892 22 C 0.075 3.925 23 N -0.339 5.339 24 C -0.365 4.365 25 H 0.092 0.908 26 C -0.256 4.256 27 N -0.595 5.595 28 Si 0.794 3.206 29 H -0.203 1.203 30 H -0.229 1.229 31 H -0.207 1.207 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.094 0.906 52 H 0.049 0.951 53 H 0.009 0.991 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.796 -10.388 -15.897 22.356 hybrid contribution 0.350 1.320 0.904 1.638 sum -11.446 -9.068 -14.993 20.929 Atomic orbital electron populations 1.21706 0.94250 1.02270 1.02235 1.21518 0.96360 0.95760 1.02142 1.22255 0.84977 0.98158 1.01655 1.61598 1.08690 1.20433 1.36680 1.22489 1.01195 1.00165 0.88661 1.21960 0.90440 0.91755 1.04174 1.20771 0.90045 0.82048 0.75807 1.90639 1.72396 1.29110 1.52850 1.49828 1.08622 1.07255 1.70290 1.20668 0.80888 0.96271 1.00332 1.21398 0.96262 0.93402 1.03563 0.88732 1.23443 0.95504 0.96121 0.97873 0.92086 1.22645 0.97579 0.79896 1.00419 1.21878 0.92998 0.91457 0.87696 0.89745 1.22071 0.95182 1.00893 0.97586 1.22071 0.97038 0.96287 0.97597 1.22258 0.96787 0.95407 0.96603 0.89151 1.21394 0.91129 0.88747 0.91259 1.45751 1.35305 1.17275 1.35616 1.19436 1.32043 0.89752 0.95268 0.90809 1.25647 1.03175 0.99692 0.97103 1.70142 1.48030 1.27984 1.13374 0.85370 0.77826 0.80375 0.77057 1.20281 1.22852 1.20701 0.92124 0.92089 0.92404 0.91951 0.92500 0.90186 0.93532 0.92096 0.90548 0.94877 0.86638 0.89573 0.93968 0.90507 0.87978 0.88783 0.89689 0.92467 0.94244 0.90568 0.95087 0.99097 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.75 5.86 30.59 0.18 -1.57 16 3 C 0.06 0.87 4.96 86.30 0.43 1.30 16 4 N -0.55 -11.69 4.50 -927.05 -4.17 -15.86 16 5 C 0.02 0.47 9.01 127.69 1.15 1.62 16 6 C 0.05 0.95 4.47 85.56 0.38 1.33 16 7 C 0.52 14.62 7.60 87.66 0.67 15.29 16 8 O -0.57 -20.45 14.67 -3.01 -0.04 -20.49 16 9 N -0.62 -16.55 3.42 -811.84 -2.77 -19.33 16 10 C 0.14 4.08 6.83 84.40 0.58 4.66 16 11 C -0.13 -3.73 2.34 -12.03 -0.03 -3.76 16 12 H 0.09 2.38 3.84 -2.39 -0.01 2.37 16 13 C -0.11 -3.42 2.91 -8.77 -0.03 -3.45 16 14 H 0.06 2.48 6.99 -2.39 -0.02 2.46 16 15 C 0.12 2.57 6.16 86.29 0.53 3.10 16 16 C 0.16 5.64 4.25 44.87 0.19 5.83 16 17 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.12 -3.36 5.44 30.60 0.17 -3.19 16 19 C -0.09 -2.90 5.61 31.79 0.18 -2.72 16 20 C -0.09 -3.11 4.52 -9.14 -0.04 -3.15 16 21 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 22 C 0.20 9.34 4.07 87.26 0.35 9.69 16 23 N -0.61 -28.47 2.21 -653.88 -1.45 -29.92 16 24 C -0.23 -12.33 10.06 84.03 0.85 -11.49 16 25 H 0.07 3.72 7.85 -2.91 -0.02 3.69 16 26 C -0.06 -3.45 5.26 84.86 0.45 -3.01 16 27 N -0.95 -56.24 10.84 21.65 0.23 -56.01 16 28 Si 0.96 44.93 29.57 68.60 2.03 46.96 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 30 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 31 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.90 6.47 -2.39 -0.02 0.89 16 36 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.08 1.15 7.93 -2.39 -0.02 1.13 16 38 H 0.05 0.61 8.12 -2.39 -0.02 0.59 16 39 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 40 H 0.08 1.40 6.30 -2.39 -0.02 1.39 16 41 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.12 2.01 7.69 -2.38 -0.02 1.99 16 43 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.10 1.72 7.45 -2.39 -0.02 1.70 16 47 H 0.09 1.74 7.52 -2.39 -0.02 1.73 16 48 H 0.09 1.85 5.62 -2.39 -0.01 1.84 16 49 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.04 1.51 7.66 -2.38 -0.02 1.49 16 51 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 52 H 0.03 1.68 6.79 -2.39 -0.02 1.66 16 53 H -0.01 -0.47 7.13 -2.38 -0.02 -0.49 16 54 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -69.16 395.03 1.41 -67.75 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.87 Total: 17.31 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.72 Total: 9.59 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -8.16 Total: -121.12 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.04 Total: -20.49 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.16 1.41 -67.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316724860.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.264 kcal (2) G-P(sol) polarization free energy of solvation -69.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds