Wall clock time and date at job start Tue Mar 31 2020 18:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50708 * 109.47039 * 2 1 4 4 C 1.32996 * 120.00026 * 95.00113 * 3 2 1 5 5 C 1.47094 * 120.00237 * 172.84340 * 4 3 2 6 6 O 1.21624 * 119.99807 * 353.63796 * 5 4 3 7 7 N 1.34771 * 120.00287 * 173.64003 * 5 4 3 8 8 C 1.47081 * 120.88368 * 185.40389 * 7 5 4 9 9 C 1.53238 * 108.52246 * 231.20318 * 8 7 5 10 10 N 1.46897 * 109.34132 * 306.16866 * 9 8 7 11 11 C 1.46896 * 111.00167 * 187.25212 * 10 9 8 12 12 H 1.08999 * 110.88463 * 298.48422 * 11 10 9 13 13 C 1.55157 * 111.00578 * 62.40507 * 11 10 9 14 14 C 1.54324 * 102.94105 * 153.57716 * 13 11 10 15 15 N 1.47021 * 107.27076 * 337.80816 * 14 13 11 16 16 C 1.36941 * 125.64753 * 178.98043 * 15 14 13 17 17 H 1.07993 * 119.99968 * 179.97438 * 16 15 14 18 18 C 1.38819 * 119.99584 * 359.97028 * 16 15 14 19 19 N 1.31617 * 120.00027 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99657 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47101 * 90.00305 * 20 18 16 22 22 H 1.48501 * 109.47331 * 210.00326 * 20 18 16 23 23 H 1.48500 * 109.47545 * 330.00552 * 20 18 16 24 24 C 1.47424 * 108.70557 * 358.94059 * 15 14 13 25 25 C 1.46908 * 111.26691 * 63.10211 * 10 9 8 26 26 C 1.47075 * 120.88003 * 5.41996 * 7 5 4 27 27 C 1.50695 * 119.99879 * 274.99825 * 3 2 1 28 28 C 1.53000 * 109.47222 * 271.38106 * 27 3 2 29 29 H 1.08994 * 109.46835 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47170 * 299.99957 * 1 2 3 31 31 H 1.09004 * 109.46735 * 60.00227 * 1 2 3 32 32 H 1.08999 * 109.47170 * 240.00042 * 2 1 3 33 33 H 1.08996 * 109.47291 * 119.99522 * 2 1 3 34 34 H 1.08003 * 119.99577 * 352.83917 * 4 3 2 35 35 H 1.09004 * 109.63273 * 111.49123 * 8 7 5 36 36 H 1.09005 * 109.62490 * 350.91112 * 8 7 5 37 37 H 1.08996 * 109.49568 * 186.20333 * 9 8 7 38 38 H 1.09000 * 109.49197 * 66.12677 * 9 8 7 39 39 H 1.08998 * 110.71626 * 35.21093 * 13 11 10 40 40 H 1.08996 * 110.72078 * 271.94132 * 13 11 10 41 41 H 1.09001 * 109.87942 * 218.39007 * 14 13 11 42 42 H 1.08992 * 109.88143 * 97.22905 * 14 13 11 43 43 H 0.97002 * 119.99868 * 179.97438 * 19 18 16 44 44 H 1.08998 * 110.36624 * 142.96843 * 24 15 14 45 45 H 1.09001 * 110.36881 * 265.18230 * 24 15 14 46 46 H 1.08994 * 109.49210 * 56.85751 * 25 10 9 47 47 H 1.09003 * 109.49107 * 176.93544 * 25 10 9 48 48 H 1.09006 * 109.62918 * 248.50389 * 26 7 5 49 49 H 1.08994 * 109.63029 * 9.08937 * 26 7 5 50 50 H 1.09002 * 109.47210 * 31.38840 * 27 3 2 51 51 H 1.09004 * 109.46883 * 151.38195 * 27 3 2 52 52 H 1.08997 * 109.47391 * 299.99778 * 28 27 3 53 53 H 1.09003 * 109.46856 * 60.00711 * 28 27 3 54 54 H 1.09004 * 109.47187 * 179.97438 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3487 2.0144 1.1474 5 6 2.9856 3.3403 1.1386 6 8 3.3282 3.8433 0.0856 7 7 3.1894 3.9977 2.2972 8 6 3.7154 5.3712 2.3035 9 6 4.9119 5.4300 3.2590 10 7 4.5103 4.9128 4.5739 11 6 5.5761 5.1103 5.5653 12 1 6.4788 4.5712 5.2780 13 6 5.8707 6.6196 5.7719 14 6 6.4272 6.6693 7.2105 15 7 5.9479 5.4658 7.9057 16 6 6.2368 5.1234 9.1998 17 1 5.8337 4.2141 9.6206 18 6 7.0478 5.9451 9.9706 19 7 7.5387 7.0534 9.4578 20 14 7.4425 5.4776 11.7356 21 1 8.6758 4.6511 11.7648 22 1 7.6527 6.7089 12.5386 23 1 6.3127 4.7012 12.3065 24 6 5.1041 4.6891 6.9794 25 6 4.1212 3.4984 4.4940 26 6 2.8922 3.3606 3.5891 27 6 2.1763 2.1692 -1.3001 28 6 3.5680 1.9157 -1.8831 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.1378 1.5228 2.0857 35 1 2.9408 6.0585 2.6439 36 1 4.0358 5.6452 1.2982 37 1 5.2458 6.4626 3.3608 38 1 5.7248 4.8220 2.8618 39 1 4.9552 7.2056 5.6920 40 1 6.6166 6.9682 5.0577 41 1 6.0613 7.5615 7.7188 42 1 7.5168 6.6745 7.1865 43 1 8.1051 7.6277 9.9966 44 1 5.2605 3.6208 7.1290 45 1 4.0533 4.9415 7.1212 46 1 4.9450 2.9174 4.0797 47 1 3.8815 3.1302 5.4916 48 1 2.0385 3.8545 4.0532 49 1 2.6684 2.3052 3.4339 50 1 1.4190 1.8237 -2.0039 51 1 2.0461 3.2365 -1.1213 52 1 4.3252 2.2612 -1.1793 53 1 3.6981 0.8483 -2.0619 54 1 3.6719 2.4566 -2.8237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324559649.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:26 Heat of formation + Delta-G solvation = -0.255528 kcal Electronic energy + Delta-G solvation = -29804.334490 eV Core-core repulsion = 25969.535865 eV Total energy + Delta-G solvation = -3834.798626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.39469 -40.04088 -38.35878 -37.21212 -35.58184 -33.85906 -32.78592 -32.50362 -31.31366 -30.60483 -29.35309 -27.55223 -26.00145 -25.51214 -24.45405 -24.18665 -22.69351 -21.77049 -21.26178 -20.46127 -18.92702 -18.89875 -18.40217 -17.17229 -16.74490 -16.53699 -16.46121 -15.97589 -15.88695 -15.72602 -15.41519 -15.31159 -14.80448 -14.63063 -14.39564 -14.23906 -14.01974 -13.92125 -13.76499 -13.52103 -13.41908 -13.26874 -12.94237 -12.86455 -12.75261 -12.59560 -12.50601 -12.40989 -12.24911 -12.11762 -11.99621 -11.81873 -11.78635 -11.65549 -11.58639 -11.55031 -11.45407 -10.70442 -10.41685 -10.10765 -9.67571 -9.25658 -8.89994 -7.84445 -5.20516 0.42131 1.46354 1.48537 1.57260 2.02677 2.29706 2.48491 2.80759 3.34512 3.54573 3.64983 3.77784 3.81594 3.91888 4.00744 4.08425 4.15385 4.24961 4.26778 4.29007 4.33201 4.40955 4.43695 4.45618 4.55044 4.62334 4.65866 4.70965 4.74083 4.77493 4.80832 4.87419 4.89560 4.97285 4.97657 5.02477 5.04352 5.09993 5.13040 5.20626 5.22696 5.35844 5.40679 5.45532 5.52977 5.59244 5.65282 5.70706 5.75209 6.03058 6.08824 6.21362 6.50372 7.10125 7.23504 7.77531 8.42245 9.26125 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.002114 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.637439 B =13244.126297 C =14010.973165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.015 4.015 4 C -0.245 4.245 5 C 0.539 3.461 6 O -0.570 6.570 7 N -0.613 5.613 8 C 0.124 3.876 9 C 0.047 3.953 10 N -0.525 5.525 11 C 0.087 3.913 12 H 0.037 0.963 13 C -0.117 4.117 14 C 0.187 3.813 15 N -0.629 5.629 16 C -0.241 4.241 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.953 5.953 20 Si 0.981 3.019 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.149 3.851 25 C 0.037 3.963 26 C 0.118 3.882 27 C -0.105 4.105 28 C -0.127 4.127 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.025 0.975 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.007 0.993 42 H 0.009 0.991 43 H 0.246 0.754 44 H 0.041 0.959 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.115 0.885 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.038 0.962 53 H 0.059 0.941 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.389 -13.729 -21.421 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.017 4.017 4 C -0.265 4.265 5 C 0.333 3.667 6 O -0.452 6.452 7 N -0.346 5.346 8 C 0.001 3.999 9 C -0.081 4.081 10 N -0.250 5.250 11 C -0.022 4.022 12 H 0.055 0.945 13 C -0.155 4.155 14 C 0.061 3.939 15 N -0.355 5.355 16 C -0.369 4.369 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.809 3.191 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.024 3.976 25 C -0.091 4.091 26 C -0.004 4.004 27 C -0.142 4.142 28 C -0.184 4.184 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.133 0.867 50 H 0.094 0.906 51 H 0.096 0.904 52 H 0.057 0.943 53 H 0.078 0.922 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.520 -13.125 -21.627 29.169 hybrid contribution 1.518 0.001 1.094 1.871 sum -13.003 -13.123 -20.533 27.621 Atomic orbital electron populations 1.21720 0.93472 1.02879 1.02239 1.20822 0.97151 0.90903 1.04338 1.22801 0.88853 0.95642 0.94399 1.22538 1.08184 0.95584 1.00197 1.19039 0.78734 0.86298 0.82675 1.90701 1.53151 1.70402 1.30983 1.48184 1.64450 1.15346 1.06592 1.21599 0.95663 0.82995 0.99631 1.22435 0.96105 1.01283 0.88321 1.61950 1.38291 1.18304 1.06480 1.22526 0.91620 0.96395 0.91667 0.94488 1.22730 1.00948 0.95459 0.96406 1.20876 0.95516 0.88651 0.88816 1.44748 1.57134 1.23653 1.10014 1.19470 1.24650 1.05360 0.87467 0.89743 1.25702 1.00485 0.97305 1.02757 1.70197 1.38492 1.14691 1.36802 0.85045 0.78186 0.76620 0.79280 1.21305 1.22198 1.19137 1.21572 0.93856 0.94392 0.87825 1.22577 0.97309 0.88050 1.01168 1.22018 0.96990 0.99891 0.81525 1.20946 0.98114 1.01132 0.94011 1.21468 0.95957 1.00941 1.00032 0.90816 0.92541 0.92623 0.89493 0.89593 0.83237 0.90171 0.89475 0.88930 0.95629 0.90475 0.90734 0.97438 0.97273 0.94448 0.94112 0.94919 0.95097 0.88692 0.89726 0.86727 0.90615 0.90438 0.94299 0.92170 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 71.98 0.71 -0.43 16 2 C -0.10 -0.88 6.10 29.85 0.18 -0.70 16 3 C -0.02 -0.22 4.61 -17.61 -0.08 -0.31 16 4 C -0.24 -4.08 8.91 23.43 0.21 -3.87 16 5 C 0.54 12.35 7.49 86.57 0.65 13.00 16 6 O -0.57 -16.13 11.05 -4.11 -0.05 -16.18 16 7 N -0.61 -13.13 3.01 -822.21 -2.47 -15.60 16 8 C 0.12 2.78 6.61 86.35 0.57 3.36 16 9 C 0.05 1.16 5.48 86.38 0.47 1.63 16 10 N -0.53 -14.16 4.53 -861.91 -3.90 -18.06 16 11 C 0.09 2.98 2.71 46.31 0.13 3.10 16 12 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 13 C -0.12 -4.34 5.36 31.78 0.17 -4.17 16 14 C 0.19 9.43 5.37 86.73 0.47 9.90 16 15 N -0.63 -32.71 3.39 -692.00 -2.35 -35.06 16 16 C -0.24 -13.57 10.28 84.03 0.86 -12.70 16 17 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 18 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 19 N -0.95 -58.16 10.31 21.65 0.22 -57.94 16 20 Si 0.98 46.00 29.55 68.60 2.03 48.02 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 C 0.15 6.01 5.62 86.85 0.49 6.49 16 25 C 0.04 0.83 5.47 86.38 0.47 1.31 16 26 C 0.12 2.04 6.47 86.35 0.56 2.60 16 27 C -0.11 -1.84 5.33 29.85 0.16 -1.68 16 28 C -0.13 -2.31 9.44 71.98 0.68 -1.63 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.65 8.03 -2.39 -0.02 0.63 16 34 H 0.15 1.73 5.97 -2.91 -0.02 1.71 16 35 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.09 2.08 7.04 -2.38 -0.02 2.07 16 37 H 0.09 2.21 6.88 -2.39 -0.02 2.19 16 38 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.07 2.48 7.94 -2.39 -0.02 2.46 16 41 H 0.01 0.42 7.50 -2.39 -0.02 0.40 16 42 H 0.01 0.51 7.38 -2.39 -0.02 0.49 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.04 1.57 7.85 -2.39 -0.02 1.55 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.09 2.09 6.78 -2.39 -0.02 2.07 16 48 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 49 H 0.11 1.37 5.47 -2.39 -0.01 1.35 16 50 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 51 H 0.08 1.80 5.62 -2.38 -0.01 1.79 16 52 H 0.04 0.90 6.84 -2.39 -0.02 0.89 16 53 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 54 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -70.24 407.23 1.50 -68.75 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.85 Total: 13.73 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 7.16 Total: 12.34 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -8.50 Total: -126.66 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.05 Total: -16.18 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -70.24 1.50 -68.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324559649.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.492 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds