Wall clock time and date at job start Tue Mar 31 2020 18:52:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50708 * 109.47259 * 2 1
4 4 C 1.32990 * 119.99901 * 82.86328 * 3 2 1
5 5 C 1.47097 * 120.00116 * 353.46634 * 4 3 2
6 6 O 1.21608 * 120.00378 * 2.51175 * 5 4 3
7 7 N 1.34781 * 119.99682 * 182.50650 * 5 4 3
8 8 C 1.47080 * 120.87822 * 174.68648 * 7 5 4
9 9 C 1.53244 * 108.52317 * 231.20891 * 8 7 5
10 10 N 1.46900 * 109.33850 * 306.17466 * 9 8 7
11 11 C 1.46897 * 110.99738 * 187.25473 * 10 9 8
12 12 H 1.08998 * 110.88252 * 303.87508 * 11 10 9
13 13 C 1.55159 * 111.00207 * 180.02562 * 11 10 9
14 14 C 1.54331 * 102.94089 * 206.42248 * 13 11 10
15 15 N 1.47026 * 107.26805 * 22.19044 * 14 13 11
16 16 C 1.36938 * 125.64390 * 181.02413 * 15 14 13
17 17 H 1.07998 * 120.00137 * 185.33849 * 16 15 14
18 18 C 1.38810 * 120.00229 * 5.33570 * 16 15 14
19 19 N 1.31629 * 119.99964 * 5.86700 * 18 16 15
20 20 Si 1.86797 * 120.00246 * 185.86361 * 18 16 15
21 21 H 1.48498 * 109.47021 * 84.99903 * 20 18 16
22 22 H 1.48502 * 109.47127 * 324.99495 * 20 18 16
23 23 H 1.48500 * 109.47322 * 204.99854 * 20 18 16
24 24 C 1.47420 * 108.70638 * 1.28932 * 15 14 13
25 25 C 1.46895 * 111.26982 * 63.10134 * 10 9 8
26 26 C 1.47075 * 120.88198 * 354.71371 * 7 5 4
27 27 C 1.50703 * 119.99484 * 262.86491 * 3 2 1
28 28 C 1.53002 * 109.46986 * 274.99369 * 27 3 2
29 29 H 1.08997 * 109.46751 * 60.00267 * 1 2 3
30 30 H 1.08997 * 109.47112 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.46973 * 300.00463 * 1 2 3
32 32 H 1.09004 * 109.47647 * 240.00092 * 2 1 3
33 33 H 1.09001 * 109.47337 * 119.99283 * 2 1 3
34 34 H 1.07998 * 119.99678 * 173.47502 * 4 3 2
35 35 H 1.09006 * 109.62702 * 111.50040 * 8 7 5
36 36 H 1.08998 * 109.62764 * 350.91926 * 8 7 5
37 37 H 1.08998 * 109.49167 * 186.21279 * 9 8 7
38 38 H 1.09002 * 109.51139 * 66.14338 * 9 8 7
39 39 H 1.08994 * 110.72189 * 88.05975 * 13 11 10
40 40 H 1.08998 * 110.87155 * 324.84883 * 13 11 10
41 41 H 1.08998 * 109.87829 * 262.77348 * 14 13 11
42 42 H 1.08996 * 109.87925 * 141.60938 * 14 13 11
43 43 H 0.96997 * 120.00167 * 179.97438 * 19 18 16
44 44 H 1.08996 * 110.36924 * 94.48381 * 24 15 14
45 45 H 1.09002 * 110.36899 * 216.80451 * 24 15 14
46 46 H 1.08994 * 109.49456 * 56.85689 * 25 10 9
47 47 H 1.09004 * 109.49307 * 176.93552 * 25 10 9
48 48 H 1.09005 * 109.62392 * 248.49707 * 26 7 5
49 49 H 1.08996 * 109.63413 * 9.07928 * 26 7 5
50 50 H 1.08993 * 109.47853 * 34.99794 * 27 3 2
51 51 H 1.09003 * 109.46803 * 154.99902 * 27 3 2
52 52 H 1.08998 * 109.47046 * 300.00387 * 28 27 3
53 53 H 1.09003 * 109.46915 * 60.00601 * 28 27 3
54 54 H 1.09001 * 109.46974 * 180.02562 * 28 27 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 6 2.1191 2.0955 1.1428
5 6 1.5920 1.5094 2.3847
6 8 1.1182 0.3894 2.3754
7 7 1.6342 2.2136 3.5331
8 6 1.0097 1.6954 4.7598
9 6 0.0961 2.7817 5.3374
10 7 0.8635 4.0228 5.5075
11 6 0.0729 5.0374 6.2169
12 1 -0.8682 5.2275 5.7009
13 6 0.8831 6.3485 6.3961
14 6 0.2524 6.9749 7.6578
15 7 -0.3942 5.8881 8.4079
16 6 -1.0860 6.0300 9.5811
17 1 -1.4519 5.1570 10.1012
18 6 -1.3170 7.2957 10.1020
19 7 -0.9739 8.3636 9.4132
20 14 -2.1150 7.4836 11.7805
21 1 -1.0744 7.3947 12.8361
22 1 -3.1138 6.4025 11.9776
23 1 -2.7914 8.8032 11.8621
24 6 -0.1688 4.6197 7.6913
25 6 1.3409 4.5353 4.2163
26 6 2.3055 3.5209 3.5928
27 6 2.4364 2.0771 -1.2951
28 6 3.8885 1.7187 -1.6171
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5137 0.8900
34 1 2.5765 3.0737 1.1590
35 1 1.7827 1.4430 5.4857
36 1 0.4209 0.8088 4.5245
37 1 -0.2892 2.4569 6.3038
38 1 -0.7353 2.9588 4.6551
39 1 0.7529 7.0031 5.5344
40 1 1.9391 6.1333 6.5592
41 1 -0.4898 7.7196 7.3704
42 1 1.0274 7.4373 8.2690
43 1 -1.1356 9.2481 9.7770
44 1 0.7065 4.1082 8.0915
45 1 -1.0490 3.9809 7.7647
46 1 0.4924 4.6879 3.5493
47 1 1.8583 5.4824 4.3697
48 1 3.2030 3.4439 4.2066
49 1 2.5734 3.8413 2.5860
50 1 1.7887 1.7256 -2.0982
51 1 2.3418 3.1588 -1.1992
52 1 4.5362 2.0704 -0.8140
53 1 3.9831 0.6371 -1.7130
54 1 4.1809 2.1938 -2.5536
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001324559650.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:52:30
Heat of formation + Delta-G solvation = 0.565464 kcal
Electronic energy + Delta-G solvation = -29860.320042 eV
Core-core repulsion = 26025.557018 eV
Total energy + Delta-G solvation = -3834.763025 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.40086 -40.04187 -38.35958 -37.19218 -35.57651 -33.87301 -32.81421 -32.53332
-30.98216 -30.87081 -29.33385 -27.46594 -26.18972 -25.41004 -24.49663 -24.12864
-22.69785 -21.78590 -21.24581 -20.44825 -19.01138 -18.82124 -18.42364 -17.14765
-16.73779 -16.56370 -16.39169 -16.01372 -15.89837 -15.80196 -15.32197 -15.29108
-14.88651 -14.63086 -14.37571 -14.25823 -14.02099 -13.87525 -13.76795 -13.56680
-13.41907 -13.24858 -12.95912 -12.88254 -12.73869 -12.57822 -12.51326 -12.36552
-12.23985 -12.11784 -11.98256 -11.82776 -11.72987 -11.65840 -11.59563 -11.58235
-11.43663 -10.72214 -10.39299 -10.11871 -9.67417 -9.25041 -8.89326 -7.83670
-5.22135 0.42701 1.45453 1.48068 1.55844 2.02720 2.30692 2.47942
2.81416 3.32575 3.55931 3.63543 3.79129 3.81587 3.90951 4.00254
4.08695 4.16562 4.23893 4.27024 4.29106 4.33709 4.42503 4.44483
4.45408 4.55530 4.62904 4.65694 4.70781 4.73797 4.77895 4.80879
4.87808 4.90312 4.97533 4.98253 5.04106 5.05090 5.10826 5.13188
5.20483 5.23195 5.36318 5.40557 5.43853 5.52700 5.58500 5.61596
5.71238 5.78807 6.03233 6.10345 6.22699 6.51470 7.09787 7.24633
7.77063 8.41640 9.24447
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.028578 B = 0.002087 C = 0.002003
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 979.554969 B =13415.483508 C =13978.452471
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.100 4.100
3 C -0.016 4.016
4 C -0.244 4.244
5 C 0.538 3.462
6 O -0.570 6.570
7 N -0.613 5.613
8 C 0.127 3.873
9 C 0.047 3.953
10 N -0.526 5.526
11 C 0.088 3.912
12 H 0.037 0.963
13 C -0.114 4.114
14 C 0.180 3.820
15 N -0.628 5.628
16 C -0.243 4.243
17 H 0.080 0.920
18 C -0.067 4.067
19 N -0.949 5.949
20 Si 0.979 3.021
21 H -0.285 1.285
22 H -0.270 1.270
23 H -0.293 1.293
24 C 0.148 3.852
25 C 0.038 3.962
26 C 0.116 3.884
27 C -0.095 4.095
28 C -0.146 4.146
29 H 0.056 0.944
30 H 0.053 0.947
31 H 0.040 0.960
32 H 0.075 0.925
33 H 0.077 0.923
34 H 0.151 0.849
35 H 0.077 0.923
36 H 0.085 0.915
37 H 0.085 0.915
38 H 0.027 0.973
39 H 0.080 0.920
40 H 0.080 0.920
41 H 0.025 0.975
42 H -0.003 1.003
43 H 0.247 0.753
44 H 0.032 0.968
45 H 0.033 0.967
46 H 0.033 0.967
47 H 0.102 0.898
48 H 0.083 0.917
49 H 0.117 0.883
50 H 0.086 0.914
51 H 0.086 0.914
52 H 0.056 0.944
53 H 0.054 0.946
54 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.967 -12.717 -24.237 29.129
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.137 4.137
3 C -0.018 4.018
4 C -0.264 4.264
5 C 0.331 3.669
6 O -0.452 6.452
7 N -0.345 5.345
8 C 0.003 3.997
9 C -0.082 4.082
10 N -0.251 5.251
11 C -0.021 4.021
12 H 0.055 0.945
13 C -0.153 4.153
14 C 0.054 3.946
15 N -0.354 5.354
16 C -0.372 4.372
17 H 0.098 0.902
18 C -0.260 4.260
19 N -0.598 5.598
20 Si 0.807 3.193
21 H -0.212 1.212
22 H -0.195 1.195
23 H -0.220 1.220
24 C 0.022 3.978
25 C -0.090 4.090
26 C -0.006 4.006
27 C -0.132 4.132
28 C -0.203 4.203
29 H 0.075 0.925
30 H 0.072 0.928
31 H 0.059 0.941
32 H 0.093 0.907
33 H 0.095 0.905
34 H 0.169 0.831
35 H 0.095 0.905
36 H 0.103 0.897
37 H 0.103 0.897
38 H 0.046 0.954
39 H 0.099 0.901
40 H 0.098 0.902
41 H 0.043 0.957
42 H 0.015 0.985
43 H 0.056 0.944
44 H 0.049 0.951
45 H 0.051 0.949
46 H 0.051 0.949
47 H 0.120 0.880
48 H 0.102 0.898
49 H 0.135 0.865
50 H 0.104 0.896
51 H 0.105 0.895
52 H 0.075 0.925
53 H 0.073 0.927
54 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 10.053 -13.251 -23.813 29.047
hybrid contribution -1.407 0.699 1.055 1.893
sum 8.646 -12.552 -22.758 27.390
Atomic orbital electron populations
1.21512 0.94702 1.01538 1.00842 1.20873 0.96612 0.93386 1.02806
1.22821 0.88924 0.94974 0.95071 1.22530 1.09032 1.03410 0.91442
1.19044 0.78745 0.84731 0.84334 1.90710 1.48293 1.20050 1.86143
1.48187 1.55735 1.21092 1.09529 1.21543 0.96565 0.95923 0.85619
1.22430 0.94516 0.90490 1.00747 1.61931 1.38815 1.03932 1.20441
1.22562 0.94123 0.91757 0.93701 0.94475 1.22735 0.99656 0.95202
0.97678 1.20985 0.93722 0.90054 0.89801 1.44739 1.62163 1.03715
1.24829 1.19422 1.27397 0.92821 0.97541 0.90201 1.25678 1.02496
0.95176 1.02673 1.70175 1.54116 0.97140 1.38368 0.85086 0.77990
0.76847 0.79352 1.21212 1.19458 1.21984 1.21608 0.97551 0.88197
0.90441 1.22595 0.98384 0.99244 0.88801 1.22070 0.94961 0.80556
1.03060 1.20827 0.98152 1.00938 0.93277 1.21717 0.94301 1.01934
1.02338 0.92511 0.92807 0.94069 0.90682 0.90491 0.83139 0.90485
0.89662 0.89682 0.95448 0.90116 0.90171 0.95682 0.98474 0.94363
0.95055 0.94870 0.94911 0.87999 0.89841 0.86506 0.89552 0.89517
0.92505 0.92683 0.90780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.45 9.31 71.98 0.67 -1.78 16
2 C -0.10 -1.76 5.36 29.85 0.16 -1.60 16
3 C -0.02 -0.24 4.62 -17.61 -0.08 -0.32 16
4 C -0.24 -4.00 8.94 23.43 0.21 -3.79 16
5 C 0.54 12.27 7.36 86.57 0.64 12.91 16
6 O -0.57 -16.12 10.63 -4.06 -0.04 -16.16 16
7 N -0.61 -13.10 3.01 -822.20 -2.47 -15.57 16
8 C 0.13 2.94 6.58 86.35 0.57 3.51 16
9 C 0.05 1.20 5.52 86.38 0.48 1.68 16
10 N -0.53 -14.10 4.52 -861.45 -3.90 -18.00 16
11 C 0.09 2.99 2.73 46.39 0.13 3.12 16
12 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
13 C -0.11 -4.05 5.03 31.79 0.16 -3.89 16
14 C 0.18 8.92 5.43 86.73 0.47 9.39 16
15 N -0.63 -32.96 3.39 -691.55 -2.35 -35.31 16
16 C -0.24 -13.89 10.27 84.03 0.86 -13.03 16
17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16
18 C -0.07 -3.88 5.46 84.86 0.46 -3.42 16
19 N -0.95 -57.61 10.42 21.65 0.23 -57.39 16
20 Si 0.98 46.34 29.56 68.60 2.03 48.37 16
21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16
22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16
24 C 0.15 6.15 5.96 86.93 0.52 6.67 16
25 C 0.04 0.79 5.43 86.39 0.47 1.26 16
26 C 0.12 1.91 6.52 86.35 0.56 2.47 16
27 C -0.09 -0.86 6.07 29.85 0.18 -0.67 16
28 C -0.15 -1.12 9.89 71.98 0.71 -0.40 16
29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.04 1.00 6.23 -2.39 -0.01 0.98 16
32 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16
33 H 0.08 1.78 5.94 -2.39 -0.01 1.77 16
34 H 0.15 1.65 5.88 -2.91 -0.02 1.64 16
35 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16
36 H 0.09 2.12 7.10 -2.39 -0.02 2.10 16
37 H 0.08 2.25 7.05 -2.39 -0.02 2.23 16
38 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16
39 H 0.08 2.47 7.96 -2.39 -0.02 2.45 16
40 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16
41 H 0.02 1.40 6.94 -2.39 -0.02 1.38 16
42 H 0.00 -0.16 7.92 -2.39 -0.02 -0.18 16
43 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16
44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16
45 H 0.03 1.37 7.87 -2.39 -0.02 1.35 16
46 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16
47 H 0.10 1.93 6.64 -2.39 -0.02 1.92 16
48 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16
49 H 0.12 1.26 5.36 -2.39 -0.01 1.25 16
50 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16
51 H 0.09 0.62 8.03 -2.39 -0.02 0.60 16
52 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16
53 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16
54 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16
Total: -1.00 -70.48 406.29 1.51 -68.97
By element:
Atomic # 1 Polarization: 12.13 SS G_CDS: 0.85 Total: 12.98 kcal
Atomic # 6 Polarization: 4.94 SS G_CDS: 7.17 Total: 12.11 kcal
Atomic # 7 Polarization: -117.77 SS G_CDS: -8.49 Total: -126.27 kcal
Atomic # 8 Polarization: -16.12 SS G_CDS: -0.04 Total: -16.16 kcal
Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal
Total: -70.48 1.51 -68.97 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001324559650.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.534 kcal
(2) G-P(sol) polarization free energy of solvation -70.481 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.968 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.565 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds