Wall clock time and date at job start Tue Mar 31 2020 18:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.44602 * 2 1 4 4 N 1.46494 * 109.47288 * 60.03542 * 3 2 1 5 5 C 1.34779 * 120.00259 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00128 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99944 * 179.97438 * 5 4 3 8 8 H 1.08994 * 109.57784 * 59.73740 * 7 5 4 9 9 C 1.53138 * 109.57844 * 299.33699 * 7 5 4 10 10 N 1.46905 * 109.37085 * 240.18703 * 9 7 5 11 11 C 1.46947 * 111.05869 * 298.01254 * 10 9 7 12 12 C 1.53117 * 109.35349 * 61.96181 * 11 10 9 13 13 C 1.53391 * 109.57416 * 179.97438 * 7 5 4 14 14 C 1.53385 * 108.60123 * 60.84874 * 13 7 5 15 15 C 1.46952 * 111.05602 * 62.00803 * 10 9 7 16 16 C 1.53035 * 109.46071 * 240.03703 * 2 1 3 17 17 C 1.53201 * 109.30993 * 301.34365 * 16 2 1 18 18 N 1.46926 * 108.77601 * 305.36472 * 17 16 2 19 19 C 1.36938 * 120.62899 * 233.61065 * 18 17 16 20 20 H 1.07997 * 120.00251 * 27.68512 * 19 18 17 21 21 C 1.38810 * 119.99502 * 207.68414 * 19 18 17 22 22 N 1.31613 * 120.00470 * 17.35474 * 21 19 18 23 23 Si 1.86802 * 119.99489 * 197.36146 * 21 19 18 24 24 H 1.48498 * 109.47371 * 59.99782 * 23 21 19 25 25 H 1.48503 * 109.46722 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47203 * 299.99148 * 23 21 19 27 27 C 1.46919 * 118.73651 * 53.60953 * 18 17 16 28 28 C 1.53034 * 109.45795 * 119.96571 * 2 1 3 29 29 H 1.08998 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47327 * 299.96862 * 1 2 3 31 31 H 1.09004 * 109.47331 * 59.96262 * 1 2 3 32 32 H 1.09001 * 109.46842 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47656 * 300.03302 * 3 2 1 34 34 H 0.97007 * 120.00595 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.48902 * 0.15792 * 9 7 5 36 36 H 1.09002 * 109.48548 * 120.21935 * 9 7 5 37 37 H 1.09005 * 109.48552 * 301.99590 * 11 10 9 38 38 H 1.08995 * 109.49108 * 181.93304 * 11 10 9 39 39 H 1.09001 * 109.57809 * 240.24621 * 12 11 10 40 40 H 1.09001 * 109.57892 * 119.86246 * 12 11 10 41 41 H 1.08998 * 110.11132 * 299.40744 * 13 7 5 42 42 H 1.08995 * 109.57672 * 178.81185 * 14 13 7 43 43 H 1.09003 * 109.57755 * 299.19669 * 14 13 7 44 44 H 1.08996 * 109.48741 * 58.00625 * 15 10 9 45 45 H 1.09000 * 109.48644 * 178.08087 * 15 10 9 46 46 H 1.08999 * 109.49808 * 181.39567 * 16 2 1 47 47 H 1.08998 * 109.52683 * 61.30770 * 16 2 1 48 48 H 1.09001 * 109.58350 * 65.15713 * 17 16 2 49 49 H 1.09001 * 109.58495 * 185.57788 * 17 16 2 50 50 H 0.97000 * 120.00650 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.58734 * 186.60481 * 27 18 17 52 52 H 1.09001 * 109.58622 * 66.17861 * 27 18 17 53 53 H 1.09006 * 109.49619 * 178.60720 * 28 2 1 54 54 H 1.09000 * 109.49774 * 298.70258 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 7 1.5515 2.1328 1.1965 5 6 1.8770 3.4232 1.4102 6 8 2.5744 4.0128 0.6121 7 6 1.3746 4.1332 2.6408 8 1 1.7331 3.6179 3.5318 9 6 -0.1567 4.1491 2.6349 10 7 -0.6295 5.5400 2.6343 11 6 -0.1944 6.2462 3.8472 12 6 1.3356 6.2896 3.8878 13 6 1.8851 5.5797 2.6440 14 6 1.3460 6.2915 1.3968 15 6 -0.1854 6.2481 1.4256 16 6 2.0399 -0.7207 -1.2501 17 6 1.4995 -2.1541 -1.2642 18 7 1.8625 -2.8089 0.0000 19 6 2.5265 -4.0065 -0.0001 20 1 3.1684 -4.2680 -0.8283 21 6 2.3745 -4.8843 1.0644 22 7 1.3614 -4.7450 1.8929 23 14 3.6083 -6.2632 1.3213 24 1 4.9614 -5.6857 1.5228 25 1 3.2247 -7.0539 2.5184 26 1 3.6196 -7.1460 0.1273 27 6 1.4996 -2.1542 1.2642 28 6 2.0398 -0.7207 1.2501 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5134 0.8903 31 1 -0.3634 0.5144 -0.8897 32 1 3.1294 1.4431 -0.0005 33 1 1.6754 1.9566 -0.8897 34 1 0.9940 1.6612 1.8352 35 1 -0.5222 3.6404 1.7429 36 1 -0.5290 3.6389 3.5232 37 1 -0.5669 5.7213 4.7269 38 1 -0.5870 7.2629 3.8367 39 1 1.6917 5.7825 4.7845 40 1 1.6715 7.3265 3.8947 41 1 2.9750 5.5925 2.6554 42 1 1.6824 7.3283 1.3940 43 1 1.7086 5.7855 0.5020 44 1 -0.5513 5.7246 0.5424 45 1 -0.5779 7.2649 1.4350 46 1 3.1296 -0.7427 -1.2383 47 1 1.6962 -0.1936 -2.1401 48 1 0.4146 -2.1346 -1.3674 49 1 1.9382 -2.7017 -2.0984 50 1 1.2554 -5.3582 2.6370 51 1 1.9382 -2.7018 2.0983 52 1 0.4146 -2.1347 1.3672 53 1 3.1296 -0.7428 1.2383 54 1 1.6957 -0.1934 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324865032.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:05 Heat of formation + Delta-G solvation = -36.592977 kcal Electronic energy + Delta-G solvation = -30983.707506 eV Core-core repulsion = 27147.333170 eV Total energy + Delta-G solvation = -3836.374336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.26675 -40.62700 -39.40293 -36.60111 -34.75164 -33.21759 -32.93819 -31.99386 -31.81396 -31.57592 -28.68729 -27.94584 -25.96920 -24.68317 -24.01783 -23.84665 -23.78608 -22.40450 -21.36762 -19.65545 -18.81861 -18.25741 -18.09019 -17.52864 -17.32079 -16.84556 -16.67320 -16.21834 -16.07364 -15.58501 -15.47468 -15.03323 -14.99965 -14.47097 -14.43800 -14.03075 -13.90929 -13.83186 -13.51812 -13.21490 -13.12667 -13.10641 -13.03069 -12.97538 -12.83985 -12.67424 -12.54635 -12.48680 -12.37330 -12.21913 -11.98871 -11.90564 -11.79771 -11.45920 -11.35716 -11.15087 -11.08120 -11.04080 -10.53626 -10.47661 -10.01430 -9.19507 -8.62503 -7.85913 -5.29246 1.46062 1.48129 1.54585 1.64630 2.21640 2.51795 3.03145 3.27740 3.48483 3.64597 3.72792 3.80387 3.85036 3.87957 3.95757 4.04766 4.10045 4.23906 4.29216 4.34955 4.40216 4.42634 4.49773 4.52455 4.62007 4.64494 4.72015 4.77822 4.83587 4.84889 4.86256 4.96145 4.97652 5.02959 5.07645 5.10034 5.14233 5.15540 5.20679 5.21471 5.27886 5.32138 5.38774 5.40832 5.49855 5.52803 5.58198 5.67844 5.86239 6.08552 6.14702 6.41395 6.56981 7.18196 7.26574 7.90867 8.40973 9.19576 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.002503 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.682496 B =11183.385420 C =11519.965206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C 0.143 3.857 4 N -0.714 5.714 5 C 0.516 3.484 6 O -0.576 6.576 7 C -0.135 4.135 8 H 0.115 0.885 9 C 0.063 3.937 10 N -0.532 5.532 11 C 0.051 3.949 12 C -0.144 4.144 13 C -0.068 4.068 14 C -0.157 4.157 15 C 0.055 3.945 16 C -0.112 4.112 17 C 0.143 3.857 18 N -0.610 5.610 19 C -0.263 4.263 20 H 0.061 0.939 21 C -0.048 4.048 22 N -0.931 5.931 23 Si 0.961 3.039 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.277 1.277 27 C 0.179 3.821 28 C -0.115 4.115 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.410 0.590 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.080 0.920 48 H 0.023 0.977 49 H 0.046 0.954 50 H 0.250 0.750 51 H 0.047 0.953 52 H 0.009 0.991 53 H 0.040 0.960 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 23.383 3.783 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.054 4.054 3 C 0.019 3.981 4 N -0.366 5.366 5 C 0.303 3.697 6 O -0.456 6.456 7 C -0.158 4.158 8 H 0.133 0.867 9 C -0.066 4.066 10 N -0.252 5.252 11 C -0.077 4.077 12 C -0.183 4.183 13 C -0.088 4.088 14 C -0.196 4.196 15 C -0.074 4.074 16 C -0.152 4.152 17 C 0.017 3.983 18 N -0.334 5.334 19 C -0.394 4.394 20 H 0.079 0.921 21 C -0.244 4.244 22 N -0.577 5.577 23 Si 0.790 3.210 24 H -0.208 1.208 25 H -0.219 1.219 26 H -0.203 1.203 27 C 0.054 3.946 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.041 0.959 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.065 0.935 52 H 0.027 0.973 53 H 0.058 0.942 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.383 23.668 3.327 24.299 hybrid contribution 1.571 -1.502 0.296 2.194 sum -2.812 22.166 3.624 22.635 Atomic orbital electron populations 1.21855 0.93473 1.01722 1.02148 1.20551 0.96526 0.92419 0.95877 1.21235 0.97997 0.91192 0.87649 1.46052 1.53338 1.11665 1.25579 1.21006 0.79327 0.81580 0.87753 1.90616 1.39715 1.66464 1.48847 1.22154 1.00037 0.97185 0.96446 0.86700 1.22292 0.89088 0.90956 1.04301 1.62539 1.57655 1.02085 1.02943 1.22318 0.92816 1.00025 0.92577 1.22268 0.97687 1.01296 0.97036 1.20881 0.99527 0.92398 0.95949 1.22404 0.97409 1.00765 0.99013 1.22208 0.92818 0.99694 0.92644 1.21883 1.00027 0.96176 0.97075 1.21044 0.96590 0.92362 0.88262 1.44285 1.66922 1.20874 1.01271 1.19446 1.19274 0.94590 1.06062 0.92122 1.25691 0.98705 0.99897 1.00069 1.70153 1.29374 1.39797 1.18362 0.85434 0.79197 0.79311 0.77062 1.20808 1.21894 1.20291 1.20595 0.95497 0.89905 0.88627 1.22040 0.99418 0.96983 0.97012 0.93488 0.91669 0.91737 0.93264 0.91608 0.75284 0.90750 0.87654 0.89275 0.89753 0.90522 0.90739 0.91656 0.91562 0.91562 0.91869 0.89570 0.93152 0.90118 0.95915 0.93496 0.94140 0.93463 0.97333 0.94155 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 7.54 71.98 0.54 -3.02 16 2 C -0.05 -1.53 0.53 -52.16 -0.03 -1.56 16 3 C 0.14 3.73 4.56 86.38 0.39 4.13 16 4 N -0.71 -15.92 4.72 -463.07 -2.18 -18.10 16 5 C 0.52 12.33 6.59 87.66 0.58 12.91 16 6 O -0.58 -18.10 13.73 -3.03 -0.04 -18.14 16 7 C -0.14 -2.36 2.60 -11.36 -0.03 -2.39 16 8 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 9 C 0.06 0.95 5.62 86.35 0.49 1.43 16 10 N -0.53 -8.26 5.22 -894.97 -4.67 -12.93 16 11 C 0.05 0.60 6.09 86.33 0.53 1.12 16 12 C -0.14 -1.80 5.75 30.77 0.18 -1.63 16 13 C -0.07 -1.22 2.59 -10.40 -0.03 -1.25 16 14 C -0.16 -3.06 5.43 30.80 0.17 -2.89 16 15 C 0.05 0.93 6.10 86.37 0.53 1.45 16 16 C -0.11 -3.57 4.91 30.67 0.15 -3.42 16 17 C 0.14 5.71 6.05 86.37 0.52 6.23 16 18 N -0.61 -29.87 2.99 -699.09 -2.09 -31.97 16 19 C -0.26 -14.45 9.58 84.03 0.81 -13.65 16 20 H 0.06 3.29 7.89 -2.91 -0.02 3.26 16 21 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 22 N -0.93 -54.14 11.19 21.65 0.24 -53.90 16 23 Si 0.96 44.84 29.59 68.60 2.03 46.87 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.18 8.18 4.84 86.37 0.42 8.60 16 28 C -0.12 -3.98 4.75 30.67 0.15 -3.83 16 29 H 0.05 1.53 4.98 -2.39 -0.01 1.52 16 30 H 0.06 1.45 6.86 -2.39 -0.02 1.43 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.41 7.73 6.08 -92.70 -0.56 7.16 16 35 H 0.07 1.25 7.47 -2.39 -0.02 1.23 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.71 5.56 -2.39 -0.01 1.70 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.02 0.91 6.69 -2.39 -0.02 0.89 16 49 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 50 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 51 H 0.05 2.51 6.04 -2.39 -0.01 2.49 16 52 H 0.01 0.41 6.69 -2.39 -0.02 0.40 16 53 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 54 H 0.07 2.03 6.82 -2.39 -0.02 2.02 16 Total: -1.00 -66.17 388.78 -0.63 -66.81 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.31 Total: 21.36 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.77 Total: 0.00 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -8.71 Total: -116.89 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.04 Total: -18.14 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.17 -0.63 -66.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324865032.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.213 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds