Wall clock time and date at job start Tue Mar 31 2020 18:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47219 * 2 1 4 4 C 1.53005 * 109.46810 * 240.00523 * 2 1 3 5 5 C 1.50695 * 109.47215 * 120.00627 * 2 1 3 6 6 C 1.32994 * 120.00344 * 359.97438 * 5 2 1 7 7 C 1.47100 * 119.99940 * 180.02562 * 6 5 2 8 8 O 1.21613 * 120.00142 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99749 * 179.97438 * 7 6 5 10 10 C 1.47027 * 125.65021 * 359.69492 * 9 7 6 11 11 C 1.54329 * 107.27086 * 178.84749 * 10 9 7 12 12 C 1.55160 * 103.01866 * 338.13948 * 11 10 9 13 13 H 1.09007 * 111.04052 * 277.22153 * 12 11 10 14 14 N 1.46894 * 111.00729 * 153.38154 * 12 11 10 15 15 C 1.46901 * 111.00325 * 186.41321 * 14 12 11 16 16 C 1.53237 * 109.33986 * 172.74705 * 15 14 12 17 17 N 1.47073 * 108.52369 * 53.82746 * 16 15 14 18 18 C 1.36939 * 120.88140 * 128.79169 * 17 16 15 19 19 H 1.08001 * 120.00188 * 209.23344 * 18 17 16 20 20 C 1.38809 * 120.00166 * 29.23541 * 18 17 16 21 21 N 1.31623 * 119.99865 * 13.10861 * 20 18 17 22 22 Si 1.86803 * 120.00458 * 193.11098 * 20 18 17 23 23 H 1.48500 * 109.47017 * 89.99246 * 22 20 18 24 24 H 1.48493 * 109.47407 * 209.99883 * 22 20 18 25 25 H 1.48502 * 109.46526 * 329.99912 * 22 20 18 26 26 C 1.47076 * 118.24097 * 308.81557 * 17 16 15 27 27 C 1.46904 * 111.00077 * 62.10707 * 14 12 11 28 28 C 1.47421 * 125.65214 * 179.97438 * 9 7 6 29 29 H 1.09002 * 109.46739 * 299.99516 * 1 2 3 30 30 H 1.09003 * 109.47294 * 59.99659 * 1 2 3 31 31 H 1.08999 * 109.47473 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47453 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47266 * 300.00358 * 3 2 1 34 34 H 1.09002 * 109.46870 * 60.00564 * 3 2 1 35 35 H 1.09001 * 109.47348 * 299.99963 * 4 2 1 36 36 H 1.09003 * 109.47341 * 59.99846 * 4 2 1 37 37 H 1.08998 * 109.46731 * 180.02562 * 4 2 1 38 38 H 1.08003 * 119.99422 * 179.97438 * 5 2 1 39 39 H 1.08000 * 119.99244 * 359.72364 * 6 5 2 40 40 H 1.09004 * 109.88165 * 298.39169 * 10 9 7 41 41 H 1.09004 * 109.88291 * 59.54872 * 10 9 7 42 42 H 1.08999 * 110.85488 * 219.67394 * 11 10 9 43 43 H 1.08993 * 110.51776 * 96.45020 * 11 10 9 44 44 H 1.09000 * 109.48919 * 292.70241 * 15 14 12 45 45 H 1.09001 * 109.49412 * 52.78300 * 15 14 12 46 46 H 1.09001 * 109.62998 * 294.11568 * 16 15 14 47 47 H 1.08999 * 109.62687 * 173.54112 * 16 15 14 48 48 H 0.97001 * 119.99994 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.62917 * 291.47941 * 26 17 16 50 50 H 1.08994 * 109.63714 * 170.89292 * 26 17 16 51 51 H 1.08997 * 109.49151 * 307.21474 * 27 14 12 52 52 H 1.09002 * 109.48853 * 67.26611 * 27 14 12 53 53 H 1.09001 * 110.36499 * 322.93385 * 28 9 7 54 54 H 1.08995 * 110.36822 * 85.14526 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 6 1.1682 -1.2156 2.1060 7 6 1.6586 -1.9087 3.3073 8 8 2.8543 -2.0202 3.4994 9 7 0.7829 -2.4201 4.1949 10 6 -0.6821 -2.3515 4.0902 11 6 -1.2640 -3.0931 5.3122 12 6 -0.0979 -4.0200 5.7463 13 1 -0.0828 -4.9342 5.1527 14 7 -0.1762 -4.3282 7.1805 15 6 1.0069 -5.0781 7.6232 16 6 0.9754 -5.2215 9.1485 17 7 -0.3153 -5.8106 9.5359 18 6 -0.3702 -6.9047 10.3576 19 1 -1.1909 -7.6018 10.2747 20 6 0.6290 -7.1177 11.2973 21 7 1.4815 -6.1559 11.5810 22 14 0.7638 -8.7695 12.1593 23 1 1.6527 -9.6653 11.3765 24 1 1.3303 -8.5741 13.5180 25 1 -0.5845 -9.3823 12.2685 26 6 -1.5456 -5.1940 9.0169 27 6 -1.4149 -5.0517 7.4967 28 6 1.1350 -3.1359 5.4346 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2495 36 1 1.6765 -0.2073 -2.1393 37 1 3.1299 -0.7216 -1.2491 38 1 3.0942 -0.8095 1.4009 39 1 0.1064 -1.1126 1.9375 40 1 -1.0059 -1.3107 4.0971 41 1 -1.0113 -2.8382 3.1721 42 1 -2.1383 -3.6796 5.0299 43 1 -1.5114 -2.3874 6.1051 44 1 1.0030 -6.0671 7.1648 45 1 1.9089 -4.5428 7.3266 46 1 1.0835 -4.2403 9.6108 47 1 1.7871 -5.8731 9.4718 48 1 2.1800 -6.3049 12.2374 49 1 -1.6798 -4.2101 9.4664 50 1 -2.4006 -5.8273 9.2531 51 1 -2.2692 -4.4971 7.1085 52 1 -1.3852 -6.0408 7.0396 53 1 2.0169 -3.7567 5.2767 54 1 1.3105 -2.4280 6.2446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327081450.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:42 Heat of formation + Delta-G solvation = -10.578822 kcal Electronic energy + Delta-G solvation = -29453.279736 eV Core-core repulsion = 25618.033459 eV Total energy + Delta-G solvation = -3835.246277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30226 -39.94775 -38.72063 -38.00888 -35.82652 -33.45429 -32.61684 -32.05607 -31.16328 -29.81162 -28.19453 -28.09616 -27.81882 -25.55044 -24.55114 -24.30463 -22.97236 -21.60798 -20.82169 -20.27969 -19.07032 -18.82208 -18.41220 -17.58281 -16.81983 -16.66699 -16.07765 -15.98506 -15.67087 -15.40028 -15.29958 -15.21520 -14.98802 -14.86983 -14.85061 -14.56408 -14.00081 -13.88636 -13.61746 -13.20103 -13.17296 -13.15792 -13.06568 -12.87324 -12.70121 -12.57070 -12.53047 -12.49250 -12.22707 -12.02918 -11.94613 -11.92695 -11.89530 -11.77642 -11.60750 -11.44812 -11.37422 -11.01032 -10.60604 -10.45694 -9.69279 -9.33329 -8.65703 -7.87814 -5.36596 0.35487 1.45570 1.46723 1.55844 1.88238 2.24907 2.49481 2.95124 3.28360 3.30325 3.61392 3.66054 3.69692 3.85605 4.05236 4.07262 4.08875 4.20075 4.25194 4.31106 4.34305 4.39237 4.43804 4.53391 4.59022 4.63720 4.69564 4.77442 4.78118 4.79701 4.86396 4.90063 4.92156 4.95676 5.01241 5.04769 5.07822 5.10332 5.14785 5.21326 5.24076 5.25728 5.32782 5.37381 5.42955 5.50402 5.56414 5.60808 5.66866 6.11881 6.23438 6.38084 6.48888 7.07819 7.12955 7.83108 8.38127 9.18705 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.030325 B = 0.001964 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.100445 B =14255.424698 C =14761.746064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.046 4.046 6 C -0.219 4.219 7 C 0.549 3.451 8 O -0.601 6.601 9 N -0.614 5.614 10 C 0.102 3.898 11 C -0.114 4.114 12 C 0.072 3.928 13 H 0.051 0.949 14 N -0.527 5.527 15 C 0.051 3.949 16 C 0.189 3.811 17 N -0.614 5.614 18 C -0.262 4.262 19 H 0.069 0.931 20 C -0.053 4.053 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.143 3.857 27 C 0.058 3.942 28 C 0.118 3.882 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.162 0.838 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.018 0.982 45 H 0.070 0.930 46 H -0.002 1.002 47 H 0.053 0.947 48 H 0.250 0.750 49 H 0.018 0.982 50 H 0.063 0.937 51 H 0.106 0.894 52 H 0.023 0.977 53 H 0.052 0.948 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 13.640 -27.531 31.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.066 4.066 6 C -0.239 4.239 7 C 0.342 3.658 8 O -0.484 6.484 9 N -0.346 5.346 10 C -0.020 4.020 11 C -0.152 4.152 12 C -0.037 4.037 13 H 0.069 0.931 14 N -0.252 5.252 15 C -0.079 4.079 16 C 0.063 3.937 17 N -0.339 5.339 18 C -0.392 4.392 19 H 0.087 0.913 20 C -0.249 4.249 21 N -0.584 5.584 22 Si 0.798 3.202 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.018 3.982 27 C -0.071 4.071 28 C -0.006 4.006 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.179 0.821 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.037 0.963 45 H 0.088 0.912 46 H 0.016 0.984 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.082 0.918 51 H 0.124 0.876 52 H 0.042 0.958 53 H 0.071 0.929 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.887 14.034 -27.092 31.279 hybrid contribution 0.991 -1.756 0.929 2.220 sum -5.896 12.279 -26.163 29.497 Atomic orbital electron populations 1.22020 0.92641 1.02739 1.03096 1.19843 0.97140 0.95581 0.92049 1.21847 1.01210 0.93720 1.02832 1.21846 1.01205 1.00331 0.96209 1.23903 0.99371 0.90039 0.93273 1.22735 1.02489 1.04467 0.94231 1.19021 0.84660 0.78307 0.83784 1.90765 1.17790 1.61609 1.78284 1.48415 1.08579 1.55515 1.22098 1.22339 0.77287 1.02546 0.99805 1.22731 0.97048 0.98165 0.97263 1.22725 0.95849 0.96882 0.88246 0.93062 1.61923 1.02555 1.46210 1.14518 1.22570 0.92954 0.94807 0.97563 1.20550 0.88713 0.95032 0.89439 1.44366 1.01266 1.32826 1.55408 1.19538 1.09227 0.99874 1.10582 0.91325 1.25914 0.99925 1.00936 0.98090 1.70169 1.20144 1.32490 1.35581 0.85219 0.78138 0.79648 0.77147 1.21375 1.22162 1.19029 1.21170 0.89017 0.95715 0.92335 1.22494 0.92100 0.95812 0.96701 1.22020 0.97358 0.94793 0.86426 0.91749 0.90816 0.91734 0.92700 0.90390 0.92612 0.92615 0.90388 0.92705 0.87826 0.82073 0.88773 0.88772 0.87391 0.89413 0.96348 0.91211 0.98366 0.92862 0.94138 0.96401 0.91843 0.87610 0.95842 0.92934 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 7.13 71.98 0.51 -0.56 16 2 C -0.05 -0.48 0.99 -52.93 -0.05 -0.54 16 3 C -0.14 -1.31 8.46 71.98 0.61 -0.70 16 4 C -0.14 -1.30 8.46 71.98 0.61 -0.69 16 5 C -0.05 -0.78 8.33 24.52 0.20 -0.57 16 6 C -0.22 -3.93 8.51 23.43 0.20 -3.73 16 7 C 0.55 14.94 7.80 86.57 0.67 15.62 16 8 O -0.60 -22.15 16.48 -4.07 -0.07 -22.22 16 9 N -0.61 -14.82 3.33 -816.08 -2.71 -17.54 16 10 C 0.10 1.50 6.06 86.73 0.53 2.02 16 11 C -0.11 -1.94 5.34 31.79 0.17 -1.77 16 12 C 0.07 1.87 2.72 46.30 0.13 1.99 16 13 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 14 N -0.53 -17.52 4.53 -861.93 -3.90 -21.42 16 15 C 0.05 2.03 5.48 86.38 0.47 2.50 16 16 C 0.19 9.58 5.38 86.35 0.46 10.05 16 17 N -0.61 -31.63 3.03 -698.16 -2.11 -33.74 16 18 C -0.26 -14.62 9.62 84.03 0.81 -13.81 16 19 H 0.07 3.69 7.86 -2.91 -0.02 3.67 16 20 C -0.05 -3.05 5.01 84.86 0.43 -2.62 16 21 N -0.94 -56.95 11.11 21.65 0.24 -56.71 16 22 Si 0.97 45.62 29.57 68.60 2.03 47.65 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C 0.14 5.87 6.69 86.35 0.58 6.45 16 27 C 0.06 1.84 5.48 86.38 0.47 2.32 16 28 C 0.12 3.41 5.31 86.85 0.46 3.87 16 29 H 0.06 0.45 7.49 -2.39 -0.02 0.43 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.44 7.50 -2.39 -0.02 0.42 16 32 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 2.23 7.49 -2.91 -0.02 2.21 16 39 H 0.16 1.82 5.07 -2.91 -0.01 1.81 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.31 7.94 -2.39 -0.02 1.30 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 2.67 6.79 -2.39 -0.02 2.65 16 46 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.05 3.05 6.20 -2.39 -0.01 3.03 16 48 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.02 0.76 8.14 -2.38 -0.02 0.75 16 50 H 0.06 2.46 7.95 -2.39 -0.02 2.45 16 51 H 0.11 2.53 6.87 -2.39 -0.02 2.51 16 52 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 54 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -74.05 413.63 1.57 -72.47 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.84 Total: 11.68 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 7.26 Total: 19.82 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -8.49 Total: -129.40 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.07 Total: -22.22 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.05 1.57 -72.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327081450.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.895 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds