Wall clock time and date at job start Tue Mar 31 2020 18:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46151 * 2 1 4 4 N 1.46490 * 109.47444 * 60.02750 * 3 2 1 5 5 C 1.34780 * 120.00441 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99209 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00359 * 179.97438 * 5 4 3 8 8 C 1.54989 * 113.20258 * 64.16750 * 7 5 4 9 9 C 1.54052 * 104.76351 * 146.47530 * 8 7 5 10 10 N 1.48237 * 106.69805 * 1.01121 * 9 8 7 11 11 C 1.48803 * 105.17640 * 332.51883 * 10 9 8 12 12 C 1.47674 * 108.91432 * 88.17371 * 10 9 8 13 13 C 1.52994 * 109.28267 * 312.91667 * 12 10 9 14 14 C 1.53152 * 110.09051 * 304.78613 * 13 12 10 15 15 C 1.53042 * 109.44572 * 119.96453 * 2 1 3 16 16 C 1.53195 * 109.31590 * 58.64774 * 15 2 1 17 17 N 1.46928 * 108.77334 * 54.63153 * 16 15 2 18 18 C 1.36939 * 120.62980 * 126.41487 * 17 16 15 19 19 H 1.07999 * 119.99867 * 331.82536 * 18 17 16 20 20 C 1.38811 * 120.00204 * 151.82556 * 18 17 16 21 21 N 1.31626 * 119.99631 * 343.07065 * 20 18 17 22 22 Si 1.86801 * 120.00092 * 163.07558 * 20 18 17 23 23 H 1.48500 * 109.47004 * 90.00331 * 22 20 18 24 24 H 1.48503 * 109.46624 * 209.99861 * 22 20 18 25 25 H 1.48491 * 109.47267 * 329.99841 * 22 20 18 26 26 C 1.46920 * 118.74173 * 306.39530 * 17 16 15 27 27 C 1.53036 * 109.45777 * 240.02173 * 2 1 3 28 28 H 1.09002 * 109.47021 * 60.00032 * 1 2 3 29 29 H 1.09002 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46654 * 300.00351 * 1 2 3 31 31 H 1.09004 * 109.46602 * 300.02388 * 3 2 1 32 32 H 1.08999 * 109.46920 * 180.02562 * 3 2 1 33 33 H 0.97006 * 120.00036 * 359.97438 * 4 3 2 34 34 H 1.09000 * 110.38183 * 265.30300 * 8 7 5 35 35 H 1.09005 * 110.37762 * 27.65366 * 8 7 5 36 36 H 1.08994 * 110.01613 * 241.69821 * 9 8 7 37 37 H 1.09004 * 110.00936 * 120.31844 * 9 8 7 38 38 H 1.09001 * 110.92833 * 160.89925 * 11 10 9 39 39 H 1.09002 * 110.93100 * 284.56090 * 11 10 9 40 40 H 1.09004 * 109.50713 * 72.85951 * 12 10 9 41 41 H 1.09007 * 109.50513 * 192.97599 * 12 10 9 42 42 H 1.08998 * 109.36667 * 184.60298 * 13 12 10 43 43 H 1.09001 * 109.26568 * 64.91309 * 13 12 10 44 44 H 1.09006 * 109.63334 * 294.29171 * 14 13 12 45 45 H 1.08992 * 109.79838 * 173.79889 * 14 13 12 46 46 H 1.09004 * 109.49612 * 178.59504 * 15 2 1 47 47 H 1.08993 * 109.49936 * 298.69568 * 15 2 1 48 48 H 1.08997 * 109.58284 * 294.85024 * 16 15 2 49 49 H 1.08997 * 109.70589 * 174.48503 * 16 15 2 50 50 H 0.97001 * 119.99502 * 180.02562 * 21 20 18 51 51 H 1.09010 * 109.58711 * 293.82036 * 26 17 16 52 52 H 1.08997 * 109.70914 * 173.46805 * 26 17 16 53 53 H 1.09002 * 109.49995 * 61.31428 * 27 2 1 54 54 H 1.09001 * 109.49600 * 181.40817 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.5519 2.1329 1.1964 5 6 1.8770 3.4234 1.4095 6 8 2.5738 4.0130 0.6109 7 6 1.3746 4.1338 2.6400 8 6 1.9260 3.5347 3.9588 9 6 2.0674 4.7394 4.9084 10 7 1.5952 5.9290 4.1604 11 6 1.8425 5.6118 2.7278 12 6 0.1379 6.0688 4.3541 13 6 -0.5331 4.7111 4.1374 14 6 -0.1607 4.1540 2.7602 15 6 2.0395 -0.7208 1.2502 16 6 1.4989 -2.1541 1.2645 17 7 1.8619 -2.8090 0.0003 18 6 2.5252 -4.0070 0.0004 19 1 3.1729 -4.2655 0.8251 20 6 2.3652 -4.8891 -1.0593 21 7 1.3507 -4.7475 -1.8859 22 14 3.5894 -6.2772 -1.3122 23 1 3.1358 -7.4791 -0.5675 24 1 3.6825 -6.5974 -2.7593 25 1 4.9230 -5.8584 -0.8111 26 6 1.4993 -2.1543 -1.2640 27 6 2.0398 -0.7210 -1.2499 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8899 31 1 1.6759 1.9564 -0.8898 32 1 3.1298 1.4427 -0.0005 33 1 0.9943 1.6614 1.8350 34 1 1.2238 2.8086 4.3686 35 1 2.8971 3.0700 3.7878 36 1 3.1113 4.8686 5.1942 37 1 1.4530 4.5888 5.7961 38 1 1.2425 6.2495 2.0786 39 1 2.9019 5.6999 2.4866 40 1 -0.0629 6.4164 5.3675 41 1 -0.2571 6.7885 3.6370 42 1 -1.6150 4.8286 4.1992 43 1 -0.2000 4.0179 4.9099 44 1 -0.5807 4.7910 1.9817 45 1 -0.5497 3.1414 2.6541 46 1 3.1293 -0.7431 1.2386 47 1 1.6955 -0.1934 2.1398 48 1 0.4140 -2.1344 1.3674 49 1 1.9353 -2.7032 2.0988 50 1 1.2387 -5.3642 -2.6263 51 1 0.4143 -2.1346 -1.3673 52 1 1.9359 -2.7013 -2.0996 53 1 1.6960 -0.1937 -2.1398 54 1 3.1295 -0.7433 -1.2380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500460192.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:58 Heat of formation + Delta-G solvation = -34.490578 kcal Electronic energy + Delta-G solvation = -30976.697326 eV Core-core repulsion = 27140.414158 eV Total energy + Delta-G solvation = -3836.283169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32543 -40.70194 -39.50976 -36.62370 -34.74142 -33.40878 -33.01065 -32.56408 -31.46782 -30.24014 -28.74017 -28.02676 -26.06051 -25.48104 -24.28023 -23.74544 -22.75864 -22.27283 -21.21781 -20.29542 -19.62389 -18.48539 -18.04116 -17.22311 -17.10696 -16.82431 -16.34376 -16.04745 -15.73014 -15.51664 -15.20628 -15.03456 -15.02513 -14.85242 -14.51954 -14.16825 -14.00815 -13.85616 -13.71077 -13.56350 -13.42218 -13.03725 -13.00610 -12.71347 -12.67833 -12.57034 -12.48771 -12.36954 -12.20760 -12.04321 -11.93075 -11.81971 -11.77567 -11.62938 -11.50578 -11.45417 -11.16002 -11.04688 -10.73971 -10.49013 -10.09209 -9.49224 -8.62819 -7.86818 -5.30713 1.44765 1.47155 1.55716 1.56031 2.14693 2.51148 2.96740 3.27693 3.46133 3.59460 3.67996 3.71289 3.78681 3.83613 3.93998 3.99872 4.08831 4.13940 4.19020 4.39093 4.41619 4.46226 4.52313 4.57566 4.58503 4.64404 4.72669 4.78713 4.80021 4.82076 4.84650 4.92152 4.96278 4.97090 4.98174 5.04998 5.06744 5.12755 5.13034 5.18679 5.21973 5.30365 5.31203 5.39254 5.44838 5.48810 5.56203 5.66769 5.77825 5.84001 6.00944 6.40789 6.52374 7.17120 7.20562 7.90010 8.40292 9.19051 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.026478 B = 0.002431 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.222657 B =11517.460415 C =11656.871390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 C 0.141 3.859 4 N -0.707 5.707 5 C 0.535 3.465 6 O -0.584 6.584 7 C -0.115 4.115 8 C -0.132 4.132 9 C 0.031 3.969 10 N -0.506 5.506 11 C 0.058 3.942 12 C 0.029 3.971 13 C -0.148 4.148 14 C -0.103 4.103 15 C -0.109 4.109 16 C 0.142 3.858 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.063 0.937 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.181 3.819 27 C -0.120 4.120 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.411 0.589 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.083 0.917 48 H 0.025 0.975 49 H 0.048 0.952 50 H 0.249 0.751 51 H 0.007 0.993 52 H 0.046 0.954 53 H 0.065 0.935 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 20.704 14.355 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 C 0.017 3.983 4 N -0.358 5.358 5 C 0.321 3.679 6 O -0.464 6.464 7 C -0.120 4.120 8 C -0.171 4.171 9 C -0.097 4.097 10 N -0.227 5.227 11 C -0.071 4.071 12 C -0.100 4.100 13 C -0.187 4.187 14 C -0.140 4.140 15 C -0.147 4.147 16 C 0.016 3.984 17 N -0.333 5.333 18 C -0.391 4.391 19 H 0.081 0.919 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.790 3.210 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.056 3.944 27 C -0.159 4.159 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.249 0.751 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.101 0.899 48 H 0.043 0.957 49 H 0.066 0.934 50 H 0.058 0.942 51 H 0.025 0.975 52 H 0.065 0.935 53 H 0.084 0.916 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.573 21.562 13.889 26.053 hybrid contribution 0.103 -2.177 -0.906 2.360 sum -4.471 19.385 12.983 23.756 Atomic orbital electron populations 1.21859 0.93500 1.01781 1.02078 1.20537 0.96517 0.92274 0.95961 1.21254 0.98182 0.91288 0.87554 1.45954 1.53054 1.11500 1.25335 1.20419 0.79160 0.81663 0.86634 1.90686 1.39980 1.67236 1.48449 1.22560 0.99018 0.97541 0.92917 1.22951 1.01867 0.99500 0.92763 1.23117 1.02155 0.87249 0.97192 1.66415 1.14767 1.36169 1.05337 1.23259 1.01434 0.91882 0.90567 1.22711 0.86935 0.97033 1.03271 1.22223 1.02256 0.97895 0.96297 1.21825 0.90556 1.02774 0.98895 1.21915 0.99888 0.96067 0.96880 1.21080 0.96694 0.92479 0.88111 1.44274 1.66973 1.20834 1.01232 1.19474 1.18955 0.94303 1.06397 0.91932 1.25732 0.98686 1.00008 1.00109 1.70170 1.29513 1.39554 1.18704 0.85365 0.79483 0.79587 0.76555 1.21067 1.21993 1.19845 1.20536 0.95400 0.89660 0.88835 1.22018 0.99793 0.97121 0.97003 0.92583 0.93365 0.90932 0.92062 0.93001 0.75127 0.88219 0.91900 0.90403 0.88624 0.90254 0.91312 0.88989 0.90720 0.89461 0.89996 0.91676 0.90071 0.93440 0.89869 0.95743 0.93355 0.94200 0.97526 0.93547 0.91644 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 7.54 71.98 0.54 -3.00 16 2 C -0.05 -1.50 0.53 -52.16 -0.03 -1.53 16 3 C 0.14 3.72 4.56 86.38 0.39 4.11 16 4 N -0.71 -14.99 4.91 -463.08 -2.27 -17.27 16 5 C 0.53 12.77 6.82 87.66 0.60 13.37 16 6 O -0.58 -19.18 16.15 -3.03 -0.05 -19.23 16 7 C -0.12 -1.95 0.97 -51.12 -0.05 -2.00 16 8 C -0.13 -1.77 5.50 31.63 0.17 -1.60 16 9 C 0.03 0.39 6.20 86.40 0.54 0.93 16 10 N -0.51 -7.83 6.06 -878.41 -5.33 -13.15 16 11 C 0.06 1.10 5.46 86.72 0.47 1.58 16 12 C 0.03 0.31 5.84 86.15 0.50 0.82 16 13 C -0.15 -1.29 5.52 30.64 0.17 -1.12 16 14 C -0.10 -1.26 5.00 30.99 0.16 -1.10 16 15 C -0.11 -3.22 4.75 30.67 0.15 -3.07 16 16 C 0.14 5.42 6.05 86.36 0.52 5.95 16 17 N -0.61 -29.64 2.99 -699.10 -2.09 -31.73 16 18 C -0.26 -14.23 9.58 84.03 0.81 -13.42 16 19 H 0.06 3.35 7.88 -2.91 -0.02 3.32 16 20 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 21 N -0.93 -54.85 11.19 21.65 0.24 -54.61 16 22 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 26 C 0.18 8.47 4.83 86.36 0.42 8.89 16 27 C -0.12 -4.34 4.91 30.67 0.15 -4.19 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.55 4.98 -2.39 -0.01 1.54 16 30 H 0.07 1.44 6.86 -2.39 -0.02 1.42 16 31 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.41 6.78 5.74 -92.70 -0.53 6.24 16 34 H 0.10 0.94 6.94 -2.39 -0.02 0.92 16 35 H 0.06 1.01 8.00 -2.38 -0.02 0.99 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 0.84 6.93 -2.38 -0.02 0.83 16 38 H 0.08 1.53 7.70 -2.39 -0.02 1.51 16 39 H 0.07 1.62 7.90 -2.39 -0.02 1.60 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.84 7.87 -2.38 -0.02 0.82 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.08 0.60 5.36 -2.39 -0.01 0.59 16 44 H 0.06 0.89 8.07 -2.38 -0.02 0.87 16 45 H 0.08 0.84 7.72 -2.39 -0.02 0.82 16 46 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.08 1.86 6.82 -2.39 -0.02 1.84 16 48 H 0.02 0.93 6.69 -2.39 -0.02 0.91 16 49 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 50 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 51 H 0.01 0.33 6.69 -2.38 -0.02 0.31 16 52 H 0.05 2.52 6.07 -2.39 -0.01 2.51 16 53 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 54 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -67.92 388.95 -1.19 -69.11 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.35 Total: 17.69 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.93 Total: 2.25 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -9.45 Total: -116.76 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.92 -1.19 -69.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500460192.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.619 kcal (2) G-P(sol) polarization free energy of solvation -67.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds