Wall clock time and date at job start Tue Mar 31 2020 18:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99428 * 2 1 4 4 C 1.53000 * 109.47037 * 239.72547 * 3 2 1 5 5 C 1.52997 * 109.47242 * 359.72504 * 3 2 1 6 6 C 1.52997 * 109.47131 * 119.72824 * 3 2 1 7 7 C 1.50709 * 109.47181 * 179.97438 * 6 3 2 8 8 O 1.21282 * 119.99632 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99890 * 179.97438 * 7 6 3 10 10 C 1.47026 * 125.64844 * 0.02828 * 9 7 6 11 11 C 1.54319 * 107.26756 * 178.90112 * 10 9 7 12 12 C 1.55159 * 102.94654 * 337.80706 * 11 10 9 13 13 H 1.09002 * 111.00297 * 277.42835 * 12 11 10 14 14 N 1.46896 * 111.00624 * 153.61287 * 12 11 10 15 15 C 1.46901 * 111.00066 * 185.75682 * 14 12 11 16 16 C 1.53237 * 109.34240 * 172.75135 * 15 14 12 17 17 N 1.47077 * 108.52590 * 53.82519 * 16 15 14 18 18 C 1.36930 * 120.88160 * 128.79483 * 17 16 15 19 19 H 1.08011 * 119.99865 * 206.59861 * 18 17 16 20 20 C 1.38813 * 120.00089 * 26.60078 * 18 17 16 21 21 N 1.31614 * 119.99932 * 17.01022 * 20 18 17 22 22 Si 1.86797 * 119.99933 * 197.00832 * 20 18 17 23 23 H 1.48501 * 109.47338 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47095 * 119.99957 * 22 20 18 25 25 H 1.48494 * 109.47351 * 239.99790 * 22 20 18 26 26 C 1.47086 * 118.23540 * 308.82277 * 17 16 15 27 27 C 1.46896 * 110.99983 * 61.45562 * 14 12 11 28 28 C 1.47420 * 125.64322 * 179.71708 * 9 7 6 29 29 H 1.07993 * 120.00844 * 0.27347 * 1 2 3 30 30 H 1.08001 * 119.99355 * 180.27600 * 1 2 3 31 31 H 1.07993 * 120.00320 * 179.72560 * 2 1 3 32 32 H 1.08998 * 109.47356 * 60.00166 * 4 3 2 33 33 H 1.09003 * 109.47344 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47444 * 300.00465 * 4 3 2 35 35 H 1.09001 * 109.47368 * 60.00210 * 5 3 2 36 36 H 1.09008 * 109.47334 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47634 * 299.99733 * 5 3 2 38 38 H 1.09001 * 109.46905 * 299.99438 * 6 3 2 39 39 H 1.08994 * 109.47410 * 59.99733 * 6 3 2 40 40 H 1.08994 * 109.88103 * 298.31541 * 10 9 7 41 41 H 1.09000 * 109.88213 * 59.33374 * 10 9 7 42 42 H 1.09002 * 110.72388 * 96.17113 * 11 10 9 43 43 H 1.09002 * 110.71745 * 219.44385 * 11 10 9 44 44 H 1.09002 * 109.49176 * 292.70333 * 15 14 12 45 45 H 1.08994 * 109.49087 * 52.78625 * 15 14 12 46 46 H 1.09007 * 109.62681 * 294.12228 * 16 15 14 47 47 H 1.08992 * 109.63106 * 173.54115 * 16 15 14 48 48 H 0.97001 * 119.99926 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.62735 * 291.46485 * 26 17 16 50 50 H 1.09008 * 109.62833 * 170.89036 * 26 17 16 51 51 H 1.09003 * 109.49686 * 307.21140 * 27 14 12 52 52 H 1.09006 * 109.49498 * 67.26618 * 27 14 12 53 53 H 1.09003 * 110.37178 * 323.00163 * 28 9 7 54 54 H 1.09001 * 110.36814 * 85.33131 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9482 1.3833 -1.2458 5 6 1.0691 2.4680 -0.0069 6 6 2.9378 1.3893 1.2526 7 6 3.6917 2.6942 1.2523 8 8 3.5437 3.4798 0.3402 9 7 4.5296 2.9887 2.2661 10 6 4.8014 2.1318 3.4295 11 6 5.8391 2.8645 4.3057 12 6 6.5171 3.8353 3.3030 13 1 7.2958 3.3277 2.7336 14 7 7.0574 5.0135 3.9942 15 6 7.5773 5.9953 3.0332 16 6 7.9632 7.2783 3.7769 17 7 8.8854 6.9270 4.8674 18 6 10.0786 7.5819 5.0171 19 1 10.9102 7.0863 5.4962 20 6 10.2195 8.8826 4.5534 21 7 9.1524 9.6034 4.2813 22 14 11.9235 9.6100 4.3155 23 1 12.9484 8.6024 4.6890 24 1 12.1034 9.9942 2.8923 25 1 12.0734 10.8114 5.1752 26 6 8.4923 5.8531 5.7924 27 6 8.0856 4.6262 4.9693 28 6 5.3301 4.2205 2.3889 29 1 -0.5401 0.9352 -0.0045 30 1 -0.5399 -0.9354 0.0045 31 1 1.8500 -0.9352 0.0045 32 1 2.3252 1.3234 -2.1382 33 1 3.4934 2.3271 -1.2456 34 1 3.6565 0.5549 -1.2409 35 1 0.4387 2.4124 0.8806 36 1 1.6140 3.4121 -0.0074 37 1 0.4461 2.4082 -0.8993 38 1 2.3075 1.3337 2.1401 39 1 3.6462 0.5609 1.2576 40 1 3.8837 1.9736 3.9958 41 1 5.2025 1.1738 3.0986 42 1 5.3468 3.4179 5.1053 43 1 6.5656 2.1611 4.7126 44 1 8.4558 5.5860 2.5343 45 1 6.8100 6.2208 2.2926 46 1 7.0689 7.7452 4.1899 47 1 8.4545 7.9665 3.0892 48 1 9.2508 10.5125 3.9576 49 1 7.6489 6.1830 6.3991 50 1 9.3336 5.5991 6.4373 51 1 7.6871 3.8589 5.6330 52 1 8.9569 4.2355 4.4434 53 1 5.6915 4.5372 1.4105 54 1 4.7400 5.0120 2.8507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502099135.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:15 Heat of formation + Delta-G solvation = 4.413739 kcal Electronic energy + Delta-G solvation = -30002.490376 eV Core-core repulsion = 26167.894225 eV Total energy + Delta-G solvation = -3834.596151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.48537 -40.15088 -38.62190 -37.53321 -35.81600 -33.41875 -32.26837 -32.06197 -31.31595 -30.03334 -28.87469 -28.19544 -27.40215 -25.06136 -24.55101 -23.76768 -22.93470 -21.58001 -20.81176 -20.12308 -19.00128 -18.82403 -18.17857 -17.57925 -16.84126 -16.51812 -16.37541 -16.13930 -15.68371 -15.52648 -15.31282 -15.25225 -15.04019 -14.85110 -14.66657 -14.55333 -14.09869 -13.92978 -13.61643 -13.44802 -13.18374 -13.13692 -12.89082 -12.74081 -12.65794 -12.57074 -12.47441 -12.24929 -12.20194 -12.03518 -12.00481 -11.86842 -11.81388 -11.74248 -11.51135 -11.43497 -11.36287 -10.60811 -10.50436 -10.21564 -9.61899 -9.32423 -8.69451 -7.88645 -5.33079 1.43560 1.44697 1.46514 1.57003 1.65035 1.96068 2.49685 2.96669 3.27074 3.35617 3.66533 3.69426 3.73518 3.84324 3.99130 4.08455 4.15396 4.22264 4.32570 4.35050 4.39134 4.41237 4.48808 4.55016 4.58823 4.62149 4.68146 4.70263 4.73564 4.82229 4.83819 4.87989 4.93335 4.97710 4.99948 5.06060 5.08964 5.10610 5.17590 5.20199 5.24534 5.30326 5.37507 5.45936 5.57462 5.60797 5.66289 5.80044 5.98575 6.12538 6.25119 6.36437 6.57366 7.12066 7.21250 7.83410 8.37264 9.18377 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.002137 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.392729 B =13099.141932 C =13695.948368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.114 4.114 7 C 0.520 3.480 8 O -0.571 6.571 9 N -0.620 5.620 10 C 0.102 3.898 11 C -0.115 4.115 12 C 0.071 3.929 13 H 0.050 0.950 14 N -0.527 5.527 15 C 0.052 3.948 16 C 0.187 3.813 17 N -0.615 5.615 18 C -0.260 4.260 19 H 0.070 0.930 20 C -0.055 4.055 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.143 3.857 27 C 0.058 3.942 28 C 0.120 3.880 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.018 0.982 45 H 0.071 0.929 46 H -0.002 1.002 47 H 0.054 0.946 48 H 0.249 0.751 49 H 0.018 0.982 50 H 0.063 0.937 51 H 0.105 0.895 52 H 0.023 0.977 53 H 0.053 0.947 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 -24.993 -3.939 29.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.165 4.165 3 C -0.022 4.022 4 C -0.204 4.204 5 C -0.209 4.209 6 C -0.153 4.153 7 C 0.312 3.688 8 O -0.451 6.451 9 N -0.354 5.354 10 C -0.020 4.020 11 C -0.153 4.153 12 C -0.038 4.038 13 H 0.068 0.932 14 N -0.253 5.253 15 C -0.078 4.078 16 C 0.061 3.939 17 N -0.339 5.339 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.250 4.250 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.071 4.071 28 C -0.004 4.004 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.037 0.963 45 H 0.089 0.911 46 H 0.016 0.984 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.081 0.919 51 H 0.123 0.877 52 H 0.041 0.959 53 H 0.072 0.928 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.158 -24.241 -4.244 28.903 hybrid contribution 1.540 1.079 -0.765 2.030 sum -13.617 -23.162 -5.009 27.332 Atomic orbital electron populations 1.24157 0.96212 1.02620 1.00232 1.22907 0.95982 0.97092 1.00525 1.19378 0.94761 0.93798 0.94243 1.21993 0.99377 1.02455 0.96574 1.22118 0.98603 0.98883 1.01333 1.21709 0.99267 0.93879 1.00451 1.21021 0.78589 0.89392 0.79836 1.90603 1.65411 1.52547 1.36510 1.48631 1.43243 1.20299 1.23212 1.22291 0.99955 0.94145 0.85603 1.22721 0.97942 0.97426 0.97236 1.22702 0.94865 0.91134 0.95131 0.93202 1.61918 1.35489 1.11543 1.16309 1.22546 0.96893 0.94172 0.94142 1.20572 0.91069 0.92554 0.89702 1.44415 1.19288 1.40386 1.29791 1.19574 0.89326 0.94328 1.35796 0.91237 1.25816 1.00387 0.96192 1.02608 1.70196 1.29012 1.08843 1.50271 0.85198 0.80251 0.78001 0.76946 1.18920 1.21873 1.21901 1.21173 0.97277 0.88103 0.91732 1.22480 0.92208 0.97676 0.94706 1.21923 0.91984 0.87774 0.98723 0.88336 0.87226 0.85861 0.93066 0.92300 0.92206 0.92373 0.92410 0.92717 0.87014 0.86538 0.88920 0.88774 0.89600 0.87717 0.96347 0.91095 0.98409 0.92784 0.94148 0.96424 0.91890 0.87681 0.95857 0.92845 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 13.70 67.78 0.93 -1.30 16 2 C -0.15 -1.76 8.76 25.65 0.22 -1.54 16 3 C -0.02 -0.34 0.74 -52.93 -0.04 -0.38 16 4 C -0.15 -2.77 8.16 71.98 0.59 -2.19 16 5 C -0.15 -2.91 6.83 71.98 0.49 -2.42 16 6 C -0.11 -1.59 3.94 29.85 0.12 -1.47 16 7 C 0.52 11.70 7.26 87.66 0.64 12.33 16 8 O -0.57 -17.49 11.60 -3.04 -0.04 -17.52 16 9 N -0.62 -13.03 3.33 -812.22 -2.70 -15.73 16 10 C 0.10 1.30 6.49 86.73 0.56 1.87 16 11 C -0.12 -1.84 5.32 31.78 0.17 -1.67 16 12 C 0.07 1.74 2.70 46.24 0.12 1.87 16 13 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 14 N -0.53 -17.11 4.53 -862.34 -3.91 -21.02 16 15 C 0.05 2.04 5.48 86.38 0.47 2.52 16 16 C 0.19 9.39 5.42 86.35 0.47 9.86 16 17 N -0.61 -31.39 3.04 -698.11 -2.12 -33.51 16 18 C -0.26 -14.44 9.63 84.03 0.81 -13.64 16 19 H 0.07 3.73 7.88 -2.90 -0.02 3.71 16 20 C -0.05 -3.12 4.93 84.86 0.42 -2.70 16 21 N -0.94 -56.64 11.15 21.65 0.24 -56.40 16 22 Si 0.97 45.45 29.59 68.60 2.03 47.48 16 23 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 C 0.14 5.80 6.69 86.35 0.58 6.37 16 27 C 0.06 1.83 5.48 86.38 0.47 2.30 16 28 C 0.12 3.21 5.33 86.78 0.46 3.67 16 29 H 0.10 1.22 5.69 -2.91 -0.02 1.21 16 30 H 0.11 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.12 1.09 8.06 -2.91 -0.02 1.06 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.48 5.51 -2.39 -0.01 1.47 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.97 7.49 -2.39 -0.02 0.95 16 36 H 0.06 1.48 5.51 -2.38 -0.01 1.47 16 37 H 0.05 0.99 7.50 -2.39 -0.02 0.97 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.10 1.22 7.94 -2.39 -0.02 1.20 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 2.64 6.82 -2.39 -0.02 2.62 16 46 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 47 H 0.05 3.06 6.12 -2.39 -0.01 3.05 16 48 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.06 2.43 7.95 -2.38 -0.02 2.41 16 51 H 0.11 2.48 6.85 -2.39 -0.02 2.46 16 52 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 53 H 0.05 1.65 7.75 -2.39 -0.02 1.63 16 54 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.91 404.70 1.84 -69.08 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.85 Total: 14.15 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 7.49 Total: 13.48 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -8.49 Total: -126.67 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.04 Total: -17.52 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.91 1.84 -69.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502099135.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.490 kcal (2) G-P(sol) polarization free energy of solvation -70.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds