Wall clock time and date at job start Tue Mar 31 2020 19:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46900 * 109.46559 * 173.00506 * 3 2 1 5 5 C 1.46848 * 111.00014 * 294.20611 * 4 3 2 6 6 C 1.53040 * 109.51997 * 174.16552 * 5 4 3 7 7 C 1.53115 * 109.28109 * 59.18343 * 6 5 4 8 8 C 1.50697 * 109.57463 * 182.40905 * 7 6 5 9 9 O 1.21281 * 120.00134 * 96.81285 * 8 7 6 10 10 N 1.34777 * 120.00073 * 276.80718 * 8 7 6 11 11 C 1.46501 * 119.99633 * 5.22184 * 10 8 7 12 12 C 1.53004 * 109.47277 * 99.78749 * 11 10 8 13 13 N 1.46497 * 109.46970 * 184.99817 * 12 11 10 14 14 C 1.46500 * 120.00321 * 269.99828 * 13 12 11 15 15 C 1.36945 * 120.00029 * 89.99855 * 13 12 11 16 16 H 1.07996 * 119.99975 * 23.69189 * 15 13 12 17 17 C 1.38808 * 119.99736 * 203.69505 * 15 13 12 18 18 N 1.31619 * 120.00389 * 10.15339 * 17 15 13 19 19 Si 1.86802 * 119.99806 * 190.16292 * 17 15 13 20 20 H 1.48497 * 109.47643 * 89.99545 * 19 17 15 21 21 H 1.48502 * 109.47310 * 209.99951 * 19 17 15 22 22 H 1.48506 * 109.46970 * 329.99548 * 19 17 15 23 23 C 1.46496 * 120.00157 * 185.21633 * 10 8 7 24 24 C 1.53000 * 109.47448 * 297.35069 * 23 10 8 25 25 C 1.53000 * 109.47272 * 57.34878 * 23 10 8 26 26 C 1.53120 * 109.15717 * 302.34447 * 7 6 5 27 27 C 1.46847 * 110.99702 * 169.99870 * 4 3 2 28 28 H 4.40881 * 5.52259 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47250 * 53.00547 * 3 2 1 30 30 H 1.09000 * 109.47347 * 293.00365 * 3 2 1 31 31 H 1.08994 * 109.46240 * 294.17773 * 5 4 3 32 32 H 1.08993 * 109.46083 * 54.14984 * 5 4 3 33 33 H 1.08998 * 109.50388 * 299.23381 * 6 5 4 34 34 H 1.08998 * 109.50221 * 179.12488 * 6 5 4 35 35 H 1.08993 * 109.52533 * 62.24761 * 7 6 5 36 36 H 1.08999 * 109.46726 * 219.78385 * 11 10 8 37 37 H 1.08997 * 109.47056 * 339.78099 * 11 10 8 38 38 H 1.08998 * 109.46585 * 304.99760 * 12 11 10 39 39 H 1.08994 * 109.46826 * 64.99517 * 12 11 10 40 40 H 1.08997 * 109.47311 * 93.56247 * 14 13 12 41 41 H 1.08990 * 109.47402 * 213.57583 * 14 13 12 42 42 H 1.09001 * 109.46576 * 333.56929 * 14 13 12 43 43 H 0.97000 * 120.00358 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47386 * 177.34850 * 23 10 8 45 45 H 1.08998 * 109.47156 * 66.13023 * 24 23 10 46 46 H 1.08994 * 109.47587 * 186.13493 * 24 23 10 47 47 H 1.09001 * 109.46849 * 306.13090 * 24 23 10 48 48 H 1.09000 * 109.46727 * 63.33886 * 25 23 10 49 49 H 1.08993 * 109.47337 * 183.33884 * 25 23 10 50 50 H 1.08999 * 109.47232 * 303.34708 * 25 23 10 51 51 H 1.09002 * 109.50425 * 297.71419 * 26 7 6 52 52 H 1.08998 * 109.50192 * 177.59911 * 26 7 6 53 53 H 1.08994 * 109.46644 * 305.85722 * 27 4 3 54 54 H 1.09012 * 109.46199 * 65.83316 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3756 -0.1687 5 6 2.7801 1.9016 -1.4930 6 6 3.1751 3.3776 -1.5796 7 6 4.6819 3.5125 -1.3433 8 6 5.0685 4.9688 -1.3685 9 8 5.1762 5.5857 -0.3299 10 7 5.2948 5.5857 -2.5452 11 6 5.0545 4.8744 -3.8032 12 6 3.7006 5.2969 -4.3774 13 7 3.4061 4.4997 -5.5707 14 6 3.8362 4.9694 -6.8900 15 6 2.7287 3.3154 -5.4529 16 1 2.0898 3.1413 -4.5998 17 6 2.8633 2.3387 -6.4301 18 7 3.7861 2.4614 -7.3605 19 14 1.7346 0.8503 -6.4246 20 1 0.5253 1.1430 -7.2352 21 1 2.4492 -0.3151 -7.0047 22 1 1.3319 0.5395 -5.0294 23 6 5.7810 6.9674 -2.5663 24 6 4.7402 7.8843 -1.9206 25 6 7.0942 7.0580 -1.7864 26 6 5.0320 2.9136 0.0217 27 6 4.5832 1.4511 0.0620 28 1 -1.0502 -0.0004 -0.0001 29 1 3.0097 -0.6176 -0.8208 30 1 3.0096 -0.4008 0.9459 31 1 3.3096 1.3383 -2.2613 32 1 1.7055 1.8035 -1.6467 33 1 2.6355 3.9439 -0.8206 34 1 2.9258 3.7636 -2.5680 35 1 5.2224 2.9785 -2.1248 36 1 5.8431 5.1185 -4.5150 37 1 5.0516 3.8002 -3.6184 38 1 2.9230 5.1348 -3.6311 39 1 3.7331 6.3530 -4.6449 40 1 4.8069 4.5363 -7.1312 41 1 3.1061 4.6652 -7.6398 42 1 3.9157 6.0564 -6.8804 43 1 3.8799 1.7791 -8.0436 44 1 5.9488 7.2779 -3.5976 45 1 4.6520 7.6443 -0.8610 46 1 5.0510 8.9229 -2.0332 47 1 3.7759 7.7389 -2.4076 48 1 7.8528 6.4510 -2.2806 49 1 7.4253 8.0959 -1.7516 50 1 6.9401 6.6915 -0.7716 51 1 4.5217 3.4725 0.8061 52 1 6.1094 2.9681 0.1774 53 1 4.8183 1.0258 1.0377 54 1 5.1043 0.8899 -0.7138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507862386.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:21 Heat of formation + Delta-G solvation = 32.023736 kcal Electronic energy + Delta-G solvation = -31528.696082 eV Core-core repulsion = 27695.297191 eV Total energy + Delta-G solvation = -3833.398892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.63660 -39.66781 -37.95847 -36.77434 -35.64085 -34.09085 -33.16271 -32.47406 -31.80971 -29.47848 -28.26058 -28.02779 -27.85216 -25.31951 -24.82549 -24.20812 -22.93921 -22.34743 -20.85965 -19.51323 -19.04341 -18.77402 -17.91515 -17.37004 -16.90571 -16.71026 -16.25756 -15.96625 -15.72307 -15.55638 -15.36496 -15.10693 -14.73167 -14.66161 -14.54616 -14.28659 -14.05427 -13.93601 -13.77609 -13.67633 -13.19788 -13.00634 -12.97016 -12.84845 -12.77256 -12.65778 -12.53241 -12.41924 -12.19971 -12.10111 -12.03385 -12.00526 -11.88589 -11.77484 -11.53340 -11.40396 -11.16764 -11.04403 -10.63218 -10.32724 -9.71258 -9.37834 -8.70781 -7.80557 -5.28470 1.44671 1.48101 1.53936 1.66741 1.74997 1.92970 2.05735 2.51930 3.05960 3.34948 3.43180 3.52055 3.74829 3.82582 3.85496 3.98082 4.12504 4.20680 4.21749 4.24883 4.36353 4.39197 4.40940 4.52901 4.54608 4.57440 4.65439 4.68709 4.71298 4.79513 4.80512 4.87871 4.89223 4.91832 4.94695 4.99759 5.01902 5.06034 5.08943 5.11665 5.29095 5.34668 5.37922 5.39839 5.41449 5.69379 5.76957 5.80296 5.97058 6.07740 6.34667 6.50938 6.71627 7.18580 7.27628 7.88570 8.32674 9.22873 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.006717 B = 0.006260 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4167.412859 B = 4471.642368 C = 7901.119522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.212 4.212 3 C 0.159 3.841 4 N -0.542 5.542 5 C 0.068 3.932 6 C -0.097 4.097 7 C -0.105 4.105 8 C 0.525 3.475 9 O -0.563 6.563 10 N -0.601 5.601 11 C 0.098 3.902 12 C 0.144 3.856 13 N -0.611 5.611 14 C 0.176 3.824 15 C -0.248 4.248 16 H 0.070 0.930 17 C -0.041 4.041 18 N -0.934 5.934 19 Si 0.949 3.051 20 H -0.290 1.290 21 H -0.297 1.297 22 H -0.269 1.269 23 C 0.136 3.864 24 C -0.158 4.158 25 C -0.159 4.159 26 C -0.088 4.088 27 C 0.059 3.941 28 H 0.243 0.757 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.007 0.993 41 H 0.017 0.983 42 H 0.027 0.973 43 H 0.246 0.754 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.081 0.919 50 H 0.056 0.944 51 H 0.069 0.931 52 H 0.077 0.923 53 H 0.104 0.896 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 1.733 13.244 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.213 4.213 3 C 0.033 3.967 4 N -0.267 5.267 5 C -0.060 4.060 6 C -0.135 4.135 7 C -0.126 4.126 8 C 0.314 3.686 9 O -0.443 6.443 10 N -0.333 5.333 11 C -0.027 4.027 12 C 0.017 3.983 13 N -0.335 5.335 14 C 0.031 3.969 15 C -0.378 4.378 16 H 0.088 0.912 17 C -0.237 4.237 18 N -0.581 5.581 19 Si 0.779 3.221 20 H -0.218 1.218 21 H -0.224 1.224 22 H -0.193 1.193 23 C 0.033 3.967 24 C -0.216 4.216 25 C -0.217 4.217 26 C -0.126 4.126 27 C -0.068 4.068 28 H 0.259 0.741 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.026 0.974 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.056 0.944 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.096 0.904 53 H 0.122 0.878 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.775 2.275 13.977 14.430 hybrid contribution -0.405 -1.485 -1.378 2.066 sum 2.370 0.790 12.599 12.844 Atomic orbital electron populations 1.25679 0.96888 0.98673 1.00514 1.23381 0.95211 1.01650 1.01021 1.19114 0.84867 0.89441 1.03276 1.61949 1.15075 1.20092 1.29566 1.21902 1.00343 0.94904 0.88894 1.21511 0.93388 0.96407 1.02241 1.21381 0.98004 0.92645 1.00600 1.20681 0.75713 0.89358 0.82886 1.90568 1.53184 1.67491 1.33068 1.48264 1.64932 1.14226 1.05917 1.22404 0.99313 0.97099 0.83872 1.21300 0.94215 0.94300 0.88530 1.44091 1.65425 1.22193 1.01745 1.20581 0.97473 0.92905 0.85914 1.19396 1.18828 0.92114 1.07463 0.91185 1.25585 0.99057 0.99825 0.99220 1.70181 1.34627 1.35537 1.17778 0.85531 0.78609 0.79985 0.78001 1.21757 1.22422 1.19334 1.21178 0.94229 0.80427 1.00847 1.22112 0.98314 0.99628 1.01519 1.22101 0.95712 1.02924 1.00989 1.21353 1.01262 0.95099 0.94889 1.22160 0.85787 0.96360 1.02457 0.74103 0.92283 0.86196 0.95190 0.91619 0.91919 0.90852 0.89495 0.91551 0.90882 0.93610 0.92846 0.97426 0.96365 0.95416 0.94411 0.88693 0.92593 0.90058 0.93445 0.92946 0.89973 0.92459 0.91257 0.90424 0.87826 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.65 19.25 74.32 1.43 -3.22 16 2 C -0.21 -5.49 12.34 31.13 0.38 -5.10 16 3 C 0.16 3.62 5.46 84.50 0.46 4.08 16 4 N -0.54 -13.99 4.63 -907.48 -4.21 -18.20 16 5 C 0.07 2.07 5.30 86.33 0.46 2.53 16 6 C -0.10 -3.06 5.24 30.65 0.16 -2.90 16 7 C -0.11 -3.07 1.74 -11.46 -0.02 -3.09 16 8 C 0.52 16.49 6.21 87.66 0.54 17.03 16 9 O -0.56 -19.58 12.31 -3.03 -0.04 -19.62 16 10 N -0.60 -17.86 2.44 -797.85 -1.94 -19.80 16 11 C 0.10 3.28 5.25 86.38 0.45 3.73 16 12 C 0.14 5.29 5.58 86.38 0.48 5.77 16 13 N -0.61 -28.04 2.92 -726.97 -2.12 -30.16 16 14 C 0.18 8.12 9.01 127.77 1.15 9.27 16 15 C -0.25 -12.50 9.66 84.03 0.81 -11.69 16 16 H 0.07 3.47 7.40 -2.91 -0.02 3.45 16 17 C -0.04 -2.18 5.15 84.86 0.44 -1.75 16 18 N -0.93 -52.27 10.61 21.65 0.23 -52.04 16 19 Si 0.95 43.30 29.57 68.60 2.03 45.33 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.14 3.47 3.25 44.99 0.15 3.62 16 24 C -0.16 -3.94 9.06 71.98 0.65 -3.29 16 25 C -0.16 -3.77 9.13 71.98 0.66 -3.11 16 26 C -0.09 -2.22 4.93 30.65 0.15 -2.07 16 27 C 0.06 1.30 5.46 86.32 0.47 1.78 16 28 H 0.24 3.79 7.80 -4.41 -0.03 3.75 16 29 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 30 H 0.12 2.08 7.99 -2.39 -0.02 2.06 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 2.16 7.11 -2.39 -0.02 2.14 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.59 4.44 -2.39 -0.01 2.57 16 35 H 0.09 2.64 6.37 -2.39 -0.02 2.63 16 36 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 37 H 0.07 2.68 5.49 -2.39 -0.01 2.67 16 38 H 0.05 1.73 5.91 -2.39 -0.01 1.72 16 39 H 0.05 1.81 7.87 -2.39 -0.02 1.79 16 40 H 0.01 0.37 7.43 -2.39 -0.02 0.36 16 41 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 42 H 0.03 1.08 7.85 -2.39 -0.02 1.06 16 43 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 44 H 0.09 2.21 7.90 -2.39 -0.02 2.19 16 45 H 0.06 1.63 6.38 -2.39 -0.02 1.62 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.06 1.61 6.07 -2.39 -0.01 1.60 16 51 H 0.07 1.96 7.80 -2.39 -0.02 1.94 16 52 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.10 1.76 8.01 -2.39 -0.02 1.74 16 54 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -61.49 414.51 3.63 -57.86 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.85 Total: 25.03 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 8.83 Total: 11.59 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -8.04 Total: -120.20 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.04 Total: -19.62 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -61.49 3.63 -57.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507862386.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.887 kcal (2) G-P(sol) polarization free energy of solvation -61.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds