Wall clock time and date at job start Tue Mar 31 2020 19:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 N 1.46494 * 109.47307 * 184.97128 * 3 2 1 5 5 C 1.34775 * 120.00324 * 95.25270 * 4 3 2 6 6 O 1.21276 * 120.00253 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99813 * 0.02562 * 5 4 3 8 8 H 1.09002 * 109.57510 * 300.25619 * 7 5 4 9 9 C 1.53133 * 109.68254 * 60.57548 * 7 5 4 10 10 N 1.46941 * 109.35263 * 119.93243 * 9 7 5 11 11 C 1.46912 * 111.05627 * 61.96190 * 10 9 7 12 12 C 1.53141 * 109.36683 * 297.99647 * 11 10 9 13 13 C 1.53386 * 108.83025 * 0.02562 * 12 11 10 14 14 C 1.53397 * 108.59617 * 301.03840 * 13 12 11 15 15 C 1.46944 * 110.97205 * 297.91544 * 10 9 7 16 16 C 1.46501 * 120.00118 * 275.25917 * 4 3 2 17 17 H 1.09003 * 110.88194 * 0.20541 * 16 4 3 18 18 C 1.55153 * 111.00872 * 124.08860 * 16 4 3 19 19 C 1.54320 * 102.94293 * 153.57467 * 18 16 4 20 20 N 1.47025 * 107.27243 * 337.81322 * 19 18 16 21 21 C 1.36938 * 125.64759 * 178.98543 * 20 19 18 22 22 H 1.08004 * 119.99884 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00197 * 359.97397 * 21 20 19 24 24 N 1.31625 * 119.99874 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47030 * 89.99631 * 25 23 21 27 27 H 1.48496 * 109.47202 * 209.99977 * 25 23 21 28 28 H 1.48504 * 109.47220 * 330.00098 * 25 23 21 29 29 C 1.47420 * 108.70113 * 358.93459 * 20 19 18 30 30 H 1.08998 * 109.47275 * 299.99994 * 1 2 3 31 31 H 1.08997 * 109.47020 * 60.00319 * 1 2 3 32 32 H 1.08999 * 109.47021 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47034 * 240.00083 * 2 1 3 34 34 H 1.08991 * 109.47057 * 120.00116 * 2 1 3 35 35 H 1.08995 * 109.47055 * 64.96494 * 3 2 1 36 36 H 1.09003 * 109.46670 * 304.96972 * 3 2 1 37 37 H 1.09005 * 109.48801 * 359.97014 * 9 7 5 38 38 H 1.08995 * 109.49260 * 239.90130 * 9 7 5 39 39 H 1.09006 * 109.48569 * 57.96044 * 11 10 9 40 40 H 1.08998 * 109.49007 * 178.02995 * 11 10 9 41 41 H 1.09001 * 109.58048 * 119.80928 * 12 11 10 42 42 H 1.08995 * 109.58106 * 240.20267 * 12 11 10 43 43 H 1.08990 * 110.11575 * 180.39570 * 13 12 11 44 44 H 1.09005 * 109.57092 * 299.18629 * 14 13 12 45 45 H 1.09006 * 109.57233 * 178.80638 * 14 13 12 46 46 H 1.09001 * 109.49027 * 182.05172 * 15 10 9 47 47 H 1.09002 * 109.48632 * 302.11943 * 15 10 9 48 48 H 1.08996 * 110.72436 * 271.94150 * 18 16 4 49 49 H 1.09003 * 110.71537 * 35.21841 * 18 16 4 50 50 H 1.09004 * 109.88079 * 97.22803 * 19 18 16 51 51 H 1.09005 * 109.88441 * 218.39179 * 19 18 16 52 52 H 0.96996 * 119.99396 * 179.97438 * 24 23 21 53 53 H 1.08999 * 110.36890 * 265.29246 * 29 20 19 54 54 H 1.09000 * 110.36519 * 142.96835 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5001 1.4443 -0.1197 5 6 4.0770 1.5855 -1.3295 6 8 5.2857 1.5865 -1.4287 7 6 3.2200 1.7421 -2.5592 8 1 2.5786 0.8679 -2.6712 9 6 2.3554 2.9992 -2.4286 10 7 2.6684 3.9220 -3.5285 11 6 2.3579 3.3161 -4.8303 12 6 3.2232 2.0683 -5.0291 13 6 4.1161 1.8834 -3.7956 14 6 4.9850 3.1364 -3.6285 15 6 4.0714 4.3547 -3.4688 16 6 4.3333 1.2924 1.0757 17 1 3.7165 1.1862 1.9682 18 6 5.3069 0.0937 0.9265 19 6 6.4789 0.4831 1.8519 20 7 6.4391 1.9436 2.0157 21 6 7.3000 2.6847 2.7805 22 1 7.1868 3.7574 2.8354 23 6 8.3181 2.0573 3.4852 24 7 8.4557 0.7499 3.4187 25 14 9.4929 3.0683 4.5278 26 1 8.9521 3.1905 5.9054 27 1 10.8169 2.3973 4.5735 28 1 9.6436 4.4208 3.9334 29 6 5.3196 2.4783 1.2194 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.7512 1.9300 0.9311 36 1 1.6058 1.9813 -0.8422 37 1 2.5628 3.4858 -1.4755 38 1 1.3021 2.7227 -2.4745 39 1 1.3047 3.0366 -4.8594 40 1 2.5663 4.0332 -5.6242 41 1 2.5824 1.1948 -5.1499 42 1 3.8454 2.1925 -5.9153 43 1 4.7471 1.0032 -3.9182 44 1 5.6136 3.2650 -4.5098 45 1 5.6117 3.0307 -2.7429 46 1 4.2675 5.0650 -4.2720 47 1 4.2646 4.8302 -2.5072 48 1 4.8373 -0.8293 1.2665 49 1 5.6456 -0.0019 -0.1051 50 1 6.3629 -0.0020 2.8211 51 1 7.4244 0.1866 1.3975 52 1 9.1674 0.3116 3.9108 53 1 5.6710 2.8002 0.2392 54 1 4.8430 3.3067 1.7434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567683429.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:39 Heat of formation + Delta-G solvation = -12.963491 kcal Electronic energy + Delta-G solvation = -32071.301995 eV Core-core repulsion = 28235.952311 eV Total energy + Delta-G solvation = -3835.349684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.48836 -40.51725 -38.36425 -37.21818 -34.64991 -33.37264 -33.14386 -32.38105 -31.82328 -30.90722 -28.97120 -27.06230 -26.54805 -24.71832 -24.20455 -23.80152 -22.64802 -22.33759 -21.92135 -19.97901 -18.98159 -18.59217 -17.99071 -17.69312 -17.29851 -16.86157 -16.54369 -16.50933 -15.80957 -15.67076 -15.52018 -14.89844 -14.55852 -14.30280 -14.15815 -13.96560 -13.90821 -13.78126 -13.69066 -13.26383 -13.10868 -13.07944 -13.01399 -12.96782 -12.80046 -12.74299 -12.60916 -12.48336 -12.34316 -12.10079 -12.05689 -11.97865 -11.90593 -11.80474 -11.61039 -11.46193 -11.26971 -11.05354 -10.74016 -10.23596 -9.59210 -9.18163 -8.88927 -7.87141 -5.23515 1.41797 1.45416 1.53958 1.70214 1.96422 2.48292 3.01148 3.29649 3.40405 3.56516 3.68711 3.79929 3.90562 3.92634 4.03276 4.07069 4.10096 4.21725 4.22796 4.24005 4.30605 4.34783 4.39741 4.46071 4.48335 4.60573 4.63358 4.66566 4.72255 4.78193 4.80021 4.89680 4.96850 4.99000 5.02335 5.03392 5.09155 5.09987 5.18131 5.22214 5.22740 5.28741 5.32186 5.39119 5.45386 5.53136 5.61603 5.67493 5.77649 6.06944 6.15917 6.17096 6.54990 7.06390 7.33276 7.73622 8.39705 9.23378 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.003678 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.839876 B = 7610.331154 C = 8817.182111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.092 3.908 4 N -0.598 5.598 5 C 0.508 3.492 6 O -0.561 6.561 7 C -0.126 4.126 8 H 0.120 0.880 9 C 0.063 3.937 10 N -0.528 5.528 11 C 0.052 3.948 12 C -0.141 4.141 13 C -0.069 4.069 14 C -0.159 4.159 15 C 0.057 3.943 16 C 0.154 3.846 17 H 0.106 0.894 18 C -0.137 4.137 19 C 0.197 3.803 20 N -0.622 5.622 21 C -0.245 4.245 22 H 0.080 0.920 23 C -0.067 4.067 24 N -0.952 5.952 25 Si 0.983 3.017 26 H -0.279 1.279 27 H -0.293 1.293 28 H -0.271 1.271 29 C 0.128 3.872 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.017 0.983 51 H -0.007 1.007 52 H 0.247 0.753 53 H 0.022 0.978 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.790 1.443 -16.632 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C -0.029 4.029 4 N -0.330 5.330 5 C 0.298 3.702 6 O -0.440 6.440 7 C -0.148 4.148 8 H 0.138 0.862 9 C -0.066 4.066 10 N -0.248 5.248 11 C -0.076 4.076 12 C -0.180 4.180 13 C -0.089 4.089 14 C -0.198 4.198 15 C -0.072 4.072 16 C 0.049 3.951 17 H 0.124 0.876 18 C -0.176 4.176 19 C 0.072 3.928 20 N -0.349 5.349 21 C -0.374 4.374 22 H 0.098 0.902 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.810 3.190 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.196 1.196 29 C 0.002 3.998 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.035 0.965 51 H 0.011 0.989 52 H 0.056 0.944 53 H 0.040 0.960 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.325 1.895 -16.507 27.829 hybrid contribution 2.316 -0.695 0.899 2.579 sum -20.009 1.200 -15.608 25.405 Atomic orbital electron populations 1.21677 0.93133 1.02441 1.02954 1.21912 0.97565 0.96203 1.02029 1.22273 0.77173 0.98300 1.05162 1.47961 1.07696 1.71904 1.05406 1.21224 0.88543 0.75298 0.85156 1.90689 1.16852 1.50143 1.86295 1.22098 0.97995 1.03123 0.91618 0.86243 1.22459 0.99970 0.89129 0.95033 1.62601 1.20015 1.38429 1.03780 1.22345 1.00374 0.94463 0.90412 1.22257 0.98769 1.00541 0.96395 1.20877 0.96033 0.97849 0.94121 1.22387 0.99114 0.96079 1.02258 1.22124 0.86944 0.96099 1.02001 1.21950 0.91050 0.94376 0.87721 0.87565 1.22992 0.96558 0.97917 1.00126 1.20732 0.93485 0.83762 0.94831 1.44622 1.33021 1.03333 1.53884 1.19458 1.07039 0.91002 1.19904 0.90247 1.25709 1.00923 0.97104 1.02219 1.70218 1.34574 1.08731 1.46611 0.85017 0.77669 0.77668 0.78602 1.20562 1.21991 1.19597 1.21894 0.88485 0.95302 0.94101 0.92083 0.90928 0.92339 0.92220 0.92971 0.89523 0.87019 0.91278 0.86142 0.88274 0.89923 0.89839 0.91140 0.92204 0.92025 0.92695 0.89529 0.92715 0.90466 0.91871 0.96497 0.98916 0.94386 0.96011 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.14 -2.10 6.26 30.60 0.19 -1.90 16 3 C 0.09 1.57 4.81 86.38 0.42 1.99 16 4 N -0.60 -16.41 2.51 -790.16 -1.98 -18.39 16 5 C 0.51 15.28 5.80 87.66 0.51 15.79 16 6 O -0.56 -23.02 9.77 -3.02 -0.03 -23.05 16 7 C -0.13 -2.54 1.85 -11.38 -0.02 -2.56 16 8 H 0.12 1.85 7.94 -2.39 -0.02 1.83 16 9 C 0.06 1.03 3.86 86.34 0.33 1.36 16 10 N -0.53 -9.27 5.22 -895.15 -4.67 -13.94 16 11 C 0.05 0.65 6.10 86.35 0.53 1.18 16 12 C -0.14 -2.01 5.76 30.77 0.18 -1.84 16 13 C -0.07 -1.53 2.59 -10.41 -0.03 -1.56 16 14 C -0.16 -4.19 5.43 30.77 0.17 -4.03 16 15 C 0.06 1.26 6.09 86.33 0.53 1.79 16 16 C 0.15 5.61 3.55 46.38 0.16 5.77 16 17 H 0.11 3.53 7.95 -2.39 -0.02 3.51 16 18 C -0.14 -5.80 6.30 31.78 0.20 -5.60 16 19 C 0.20 10.88 5.37 86.73 0.47 11.35 16 20 N -0.62 -35.32 3.39 -691.98 -2.35 -37.67 16 21 C -0.25 -14.86 10.28 84.03 0.86 -14.00 16 22 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 23 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 24 N -0.95 -60.81 10.31 21.65 0.22 -60.59 16 25 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 27 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 29 C 0.13 5.94 6.61 86.86 0.57 6.52 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.95 7.98 -2.38 -0.02 0.93 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.38 8.07 -2.39 -0.02 1.36 16 36 H 0.11 1.36 3.86 -2.39 -0.01 1.35 16 37 H 0.07 1.37 6.79 -2.38 -0.02 1.36 16 38 H 0.12 1.14 7.43 -2.39 -0.02 1.12 16 39 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 44 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.05 1.97 5.58 -2.38 -0.01 1.95 16 46 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 49 H 0.06 2.88 5.90 -2.39 -0.01 2.86 16 50 H 0.02 1.00 7.38 -2.38 -0.02 0.98 16 51 H -0.01 -0.47 7.51 -2.38 -0.02 -0.49 16 52 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 53 H 0.02 1.12 5.88 -2.39 -0.01 1.10 16 54 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -78.24 390.49 0.32 -77.92 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.86 Total: 15.49 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 6.24 Total: 9.96 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -8.78 Total: -130.59 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.03 Total: -23.05 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -78.24 0.32 -77.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567683429.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.959 kcal (2) G-P(sol) polarization free energy of solvation -78.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds