Wall clock time and date at job start Tue Mar 31 2020 19:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47363 * 2 1 4 4 C 1.53006 * 109.47224 * 239.99508 * 2 1 3 5 5 C 1.52998 * 109.47001 * 300.00034 * 4 2 1 6 6 C 1.52998 * 109.47496 * 300.00002 * 5 4 2 7 7 C 1.53006 * 109.46998 * 59.99996 * 6 5 4 8 8 C 1.52993 * 109.47166 * 300.00001 * 7 6 5 9 9 C 1.52998 * 109.47273 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47145 * 65.46750 * 9 8 7 11 11 C 1.36935 * 119.99901 * 175.10737 * 10 9 8 12 12 H 1.08004 * 120.00252 * 359.97438 * 11 10 9 13 13 C 1.38812 * 120.00017 * 180.02562 * 11 10 9 14 14 N 1.31613 * 119.99828 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00120 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46902 * 59.99793 * 15 13 11 17 17 H 1.48495 * 109.47062 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46998 * 299.99731 * 15 13 11 19 19 N 1.46504 * 109.47456 * 300.00019 * 8 7 6 20 20 C 1.34772 * 120.00479 * 178.41006 * 19 8 7 21 21 O 1.21287 * 119.99724 * 5.05484 * 20 19 8 22 22 C 1.50696 * 120.00361 * 185.05375 * 20 19 8 23 23 C 1.56247 * 116.69041 * 297.57676 * 22 20 19 24 24 C 1.55907 * 102.63773 * 199.96694 * 23 22 20 25 25 N 1.49526 * 105.39409 * 0.47201 * 24 23 22 26 26 C 1.49519 * 105.91922 * 287.96853 * 25 24 23 27 27 C 1.54663 * 105.28179 * 71.26192 * 26 25 24 28 28 C 1.50468 * 102.03179 * 34.37860 * 25 24 23 29 29 H 1.08997 * 109.47017 * 300.00920 * 1 2 3 30 30 H 1.09005 * 109.47019 * 60.00511 * 1 2 3 31 31 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46918 * 60.00471 * 4 2 1 33 33 H 1.08998 * 109.46856 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46995 * 59.99859 * 5 4 2 35 35 H 1.09000 * 109.47150 * 179.97438 * 5 4 2 36 36 H 1.09002 * 109.47408 * 180.02562 * 6 5 4 37 37 H 1.08995 * 109.47034 * 300.00209 * 6 5 4 38 38 H 1.09005 * 109.47138 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.47054 * 60.00225 * 7 6 5 40 40 H 1.09007 * 109.47255 * 185.46712 * 9 8 7 41 41 H 1.08998 * 109.47158 * 305.46511 * 9 8 7 42 42 H 0.97001 * 120.00017 * 355.10514 * 10 9 8 43 43 H 0.97007 * 120.00130 * 180.02562 * 14 13 11 44 44 H 0.97000 * 119.99466 * 358.41612 * 19 8 7 45 45 H 1.08997 * 110.66788 * 319.47306 * 23 22 20 46 46 H 1.08996 * 110.67114 * 82.60886 * 23 22 20 47 47 H 1.09002 * 110.87898 * 241.14566 * 24 23 22 48 48 H 1.08997 * 109.66293 * 119.16283 * 24 23 22 49 49 H 1.08997 * 110.27834 * 190.20708 * 26 25 24 50 50 H 1.08990 * 110.28732 * 312.21414 * 26 25 24 51 51 H 1.09003 * 110.66549 * 242.21755 * 27 26 25 52 52 H 1.09006 * 110.66691 * 119.08830 * 27 26 25 53 53 H 1.08997 * 111.90848 * 188.40150 * 28 25 24 54 54 H 1.08996 * 111.97086 * 62.21463 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5300 -2.1639 -1.2491 6 6 2.0399 -2.8851 0.0002 7 6 1.5299 -2.1637 1.2494 8 6 2.0399 -0.7213 1.2493 9 6 1.5304 -0.0001 2.4988 10 7 2.1237 -0.6106 3.6911 11 6 1.8921 -0.0666 4.9262 12 1 1.2724 0.8129 5.0214 13 6 2.4546 -0.6447 6.0559 14 7 3.2102 -1.7161 5.9399 15 14 2.1393 0.0979 7.7407 16 1 0.6810 0.0880 8.0209 17 1 2.8478 -0.6997 8.7736 18 1 2.6389 1.4961 7.7667 19 7 3.5049 -0.7212 1.2494 20 6 4.1789 0.4454 1.2170 21 8 3.5760 1.4960 1.2803 22 6 5.6814 0.4448 1.1021 23 6 6.4745 -0.2219 2.2717 24 6 7.8976 0.3951 2.1141 25 7 7.8020 1.3194 0.9426 26 6 7.6992 0.4426 -0.2642 27 6 6.2857 -0.1813 -0.1956 28 6 6.3973 1.8434 1.0703 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6767 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 0.4400 -2.1638 -1.2491 35 1 1.8930 -2.6776 -2.1392 36 1 1.6769 -3.9129 0.0000 37 1 3.1299 -2.8851 0.0002 38 1 1.8935 -2.6772 2.1395 39 1 0.4399 -2.1637 1.2494 40 1 1.8116 1.0520 2.4512 41 1 0.4449 -0.0840 2.5495 42 1 2.6805 -1.4003 3.6056 43 1 3.6030 -2.1204 6.7293 44 1 3.9899 -1.5610 1.2727 45 1 6.0268 0.0304 3.2329 46 1 6.5196 -1.3028 2.1389 47 1 8.6386 -0.3812 1.9234 48 1 8.1576 0.9518 3.0143 49 1 7.8067 1.0358 -1.1723 50 1 8.4600 -0.3371 -0.2307 51 1 6.3479 -1.2659 -0.1067 52 1 5.6977 0.1011 -1.0689 53 1 6.1022 2.4317 0.2015 54 1 6.2511 2.3963 1.9982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568043935.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:18 Heat of formation + Delta-G solvation = -32.145252 kcal Electronic energy + Delta-G solvation = -32563.864305 eV Core-core repulsion = 28727.682837 eV Total energy + Delta-G solvation = -3836.181468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30299 -41.26096 -38.84149 -36.46383 -34.76878 -33.45373 -32.80176 -31.71311 -31.58825 -30.65890 -29.04640 -27.80309 -26.56792 -24.73938 -23.84402 -23.46470 -23.06668 -21.80993 -21.68205 -20.29112 -19.46376 -18.93796 -18.08052 -17.09522 -16.99539 -16.72046 -16.30816 -16.22641 -15.98153 -15.78888 -15.20574 -15.09081 -14.66127 -14.50313 -14.24142 -13.97912 -13.82901 -13.77437 -13.65398 -13.56496 -13.16028 -13.11873 -12.94051 -12.84095 -12.71197 -12.66420 -12.46525 -12.38488 -12.32957 -12.18263 -12.15080 -11.94997 -11.82707 -11.63029 -11.25641 -11.21580 -11.12293 -11.02042 -10.89327 -10.34495 -10.06234 -9.78232 -8.92638 -7.95581 -5.20538 1.41715 1.44114 1.50045 1.70899 2.25279 2.53791 2.83148 3.36538 3.44578 3.50150 3.62809 3.81076 3.83455 3.86956 3.99593 4.05475 4.10421 4.14891 4.24223 4.32472 4.36889 4.45373 4.48768 4.52083 4.57419 4.57789 4.67030 4.70500 4.78572 4.79656 4.83359 4.85896 4.91303 4.91946 4.94069 4.98464 5.02076 5.13725 5.16771 5.17630 5.19229 5.26419 5.28335 5.40829 5.44823 5.46092 5.47260 5.53009 5.61081 5.68379 5.81050 6.27217 6.70701 7.34603 7.40884 8.10181 8.38928 9.26824 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.005883 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.600041 B = 4758.018798 C = 7162.636283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.058 0.942 4 C -0.102 4.102 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.116 4.116 8 C 0.190 3.810 9 C 0.143 3.857 10 N -0.725 5.725 11 C -0.242 4.242 12 H 0.058 0.942 13 C -0.065 4.065 14 N -0.959 5.959 15 Si 0.963 3.037 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.288 1.288 19 N -0.694 5.694 20 C 0.554 3.446 21 O -0.571 6.571 22 C -0.130 4.130 23 C -0.130 4.130 24 C 0.019 3.981 25 N -0.472 5.472 26 C 0.015 3.985 27 C -0.120 4.120 28 C 0.039 3.961 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.014 0.986 41 H 0.017 0.983 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.403 0.597 45 H 0.040 0.960 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.094 0.906 52 H 0.078 0.922 53 H 0.090 0.910 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -3.505 -19.777 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.077 0.923 4 C -0.139 4.139 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.154 4.154 8 C 0.104 3.896 9 C 0.016 3.984 10 N -0.369 5.369 11 C -0.375 4.375 12 H 0.076 0.924 13 C -0.258 4.258 14 N -0.610 5.610 15 Si 0.793 3.207 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.215 1.215 19 N -0.344 5.344 20 C 0.340 3.660 21 O -0.450 6.450 22 C -0.135 4.135 23 C -0.169 4.169 24 C -0.110 4.110 25 N -0.192 5.192 26 C -0.113 4.113 27 C -0.159 4.159 28 C -0.090 4.090 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.238 0.762 45 H 0.059 0.941 46 H 0.108 0.892 47 H 0.123 0.877 48 H 0.091 0.909 49 H 0.112 0.888 50 H 0.118 0.882 51 H 0.113 0.887 52 H 0.096 0.904 53 H 0.108 0.892 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.335 -2.146 -19.671 20.494 hybrid contribution -0.667 -0.445 1.965 2.122 sum 4.667 -2.591 -17.706 18.493 Atomic orbital electron populations 1.21938 0.94099 1.02694 1.01548 1.21330 0.96620 0.99424 0.93989 0.92331 1.21453 1.00316 0.96176 0.95988 1.21549 1.01303 0.94538 0.97648 1.21518 1.00903 0.99215 0.93254 1.21755 1.01753 0.92862 0.99063 1.20406 0.79310 0.96296 0.93628 1.21188 0.94851 0.95811 0.86567 1.42233 1.59887 1.33354 1.01380 1.19444 1.24165 1.07882 0.85970 0.92427 1.25329 1.00870 0.98900 1.00673 1.69755 1.38626 1.23682 1.28943 0.85374 0.77632 0.77286 0.80446 1.20548 1.21493 1.21488 1.45778 1.06528 1.08157 1.73897 1.19679 0.88215 0.83534 0.74583 1.90627 1.70449 1.33046 1.50889 1.23700 0.90843 0.99520 0.99450 1.23332 0.95978 1.01177 0.96407 1.23822 0.95556 0.96360 0.95245 1.69972 1.22756 1.23146 1.03323 1.23699 0.95962 0.96871 0.94784 1.23152 0.96857 1.01439 0.94474 1.24201 0.87856 0.94838 1.02105 0.94303 0.91233 0.90862 0.91206 0.92485 0.91199 0.90258 0.90465 0.91670 0.93085 0.90260 0.96793 0.96579 0.79011 0.94044 0.76163 0.94099 0.89189 0.87665 0.90935 0.88812 0.88214 0.88727 0.90372 0.89206 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.15 71.98 0.59 -3.09 16 2 C -0.09 -2.64 2.02 -10.79 -0.02 -2.66 16 3 H 0.06 2.03 6.23 -2.39 -0.01 2.02 16 4 C -0.10 -2.12 5.29 30.60 0.16 -1.96 16 5 C -0.11 -1.93 5.65 30.59 0.17 -1.76 16 6 C -0.11 -2.19 5.75 30.60 0.18 -2.02 16 7 C -0.12 -3.28 4.38 30.59 0.13 -3.14 16 8 C 0.19 6.14 0.09 3.60 0.00 6.14 16 9 C 0.14 6.34 4.36 86.38 0.38 6.72 16 10 N -0.73 -37.82 5.18 -343.45 -1.78 -39.60 16 11 C -0.24 -14.27 9.99 84.03 0.84 -13.43 16 12 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 13 C -0.06 -3.81 5.50 84.86 0.47 -3.35 16 14 N -0.96 -58.05 13.06 21.65 0.28 -57.76 16 15 Si 0.96 47.88 29.55 68.60 2.03 49.91 16 16 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 17 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 19 N -0.69 -21.49 3.50 -422.92 -1.48 -22.97 16 20 C 0.55 19.10 6.69 87.66 0.59 19.69 16 21 O -0.57 -24.47 12.86 -3.05 -0.04 -24.51 16 22 C -0.13 -3.57 1.37 -49.22 -0.07 -3.63 16 23 C -0.13 -3.61 6.13 32.73 0.20 -3.41 16 24 C 0.02 0.44 6.64 86.80 0.58 1.02 16 25 N -0.47 -11.11 6.94 -853.86 -5.93 -17.04 16 26 C 0.02 0.26 6.61 86.36 0.57 0.83 16 27 C -0.12 -2.21 6.04 32.29 0.20 -2.02 16 28 C 0.04 1.12 6.05 87.06 0.53 1.65 16 29 H 0.04 1.14 6.56 -2.39 -0.02 1.13 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.07 1.63 4.81 -2.39 -0.01 1.62 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.21 7.60 -2.39 -0.02 1.19 16 34 H 0.07 1.16 6.43 -2.39 -0.02 1.14 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.20 6.89 -2.39 -0.02 1.19 16 38 H 0.05 1.72 7.11 -2.38 -0.02 1.70 16 39 H 0.08 2.20 6.43 -2.39 -0.02 2.19 16 40 H 0.01 0.72 6.29 -2.38 -0.01 0.70 16 41 H 0.02 0.73 6.74 -2.39 -0.02 0.72 16 42 H 0.38 19.99 6.46 -92.71 -0.60 19.39 16 43 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 44 H 0.40 10.96 7.38 -92.71 -0.68 10.27 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.09 2.16 7.86 -2.39 -0.02 2.14 16 47 H 0.11 1.88 7.69 -2.39 -0.02 1.86 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.10 1.31 7.69 -2.39 -0.02 1.29 16 51 H 0.09 1.40 7.86 -2.39 -0.02 1.38 16 52 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 53 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 54 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -71.24 390.74 -1.81 -73.06 By element: Atomic # 1 Polarization: 43.70 SS G_CDS: -0.38 Total: 43.32 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.48 Total: -4.41 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -8.90 Total: -137.36 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.04 Total: -24.51 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -71.24 -1.81 -73.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568043935.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.912 kcal (2) G-P(sol) polarization free energy of solvation -71.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds