Wall clock time and date at job start Tue Mar 31 2020 19:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47167 * 273.54201 * 3 2 1 5 5 C 1.46843 * 111.00049 * 294.21375 * 4 3 2 6 6 C 1.53043 * 109.52446 * 174.16274 * 5 4 3 7 7 C 1.53115 * 109.28035 * 59.17281 * 6 5 4 8 8 C 1.50693 * 109.57597 * 182.41032 * 7 6 5 9 9 O 1.21290 * 120.00308 * 119.71565 * 8 7 6 10 10 N 1.34779 * 120.00267 * 299.72067 * 8 7 6 11 11 C 1.46497 * 120.00011 * 359.97438 * 10 8 7 12 12 C 1.46492 * 120.00023 * 180.02562 * 10 8 7 13 13 C 1.52997 * 109.47624 * 89.99820 * 12 10 8 14 14 C 1.53005 * 109.46835 * 299.99825 * 13 12 10 15 15 C 1.52999 * 109.47418 * 59.99634 * 13 12 10 16 16 C 1.53002 * 109.47367 * 180.02562 * 13 12 10 17 17 N 1.46504 * 109.47025 * 179.97438 * 16 13 12 18 18 C 1.36939 * 119.99764 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99973 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00148 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00429 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46898 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46980 * 119.99908 * 22 20 18 25 25 H 1.48498 * 109.47437 * 239.99981 * 22 20 18 26 26 C 1.53119 * 109.16391 * 302.35079 * 7 6 5 27 27 C 1.46842 * 111.00041 * 169.99731 * 4 3 2 28 28 H 4.40889 * 5.52257 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 30 30 H 1.09001 * 109.46952 * 33.54408 * 3 2 1 31 31 H 1.09004 * 109.46019 * 294.17499 * 5 4 3 32 32 H 1.08999 * 109.46883 * 54.14319 * 5 4 3 33 33 H 1.09007 * 109.49669 * 299.23395 * 6 5 4 34 34 H 1.08996 * 109.50102 * 179.12000 * 6 5 4 35 35 H 1.09007 * 109.52268 * 62.25145 * 7 6 5 36 36 H 1.09006 * 109.46882 * 89.99990 * 11 10 8 37 37 H 1.08994 * 109.47711 * 210.00249 * 11 10 8 38 38 H 1.09008 * 109.47245 * 330.00739 * 11 10 8 39 39 H 1.09001 * 109.47140 * 209.99955 * 12 10 8 40 40 H 1.09004 * 109.47777 * 329.99309 * 12 10 8 41 41 H 1.08999 * 109.46927 * 60.00012 * 14 13 12 42 42 H 1.09000 * 109.46812 * 179.97438 * 14 13 12 43 43 H 1.09007 * 109.47150 * 299.99448 * 14 13 12 44 44 H 1.09001 * 109.46555 * 60.00349 * 15 13 12 45 45 H 1.09002 * 109.47338 * 180.02562 * 15 13 12 46 46 H 1.08995 * 109.46798 * 300.00710 * 15 13 12 47 47 H 1.09001 * 109.46966 * 299.99531 * 16 13 12 48 48 H 1.08997 * 109.47153 * 59.99754 * 16 13 12 49 49 H 0.96994 * 120.00318 * 359.97438 * 17 16 13 50 50 H 0.97000 * 119.99984 * 180.02562 * 21 20 18 51 51 H 1.09002 * 109.50021 * 297.71564 * 26 7 6 52 52 H 1.09001 * 109.50518 * 177.59261 * 26 7 6 53 53 H 1.08998 * 109.46877 * 305.85973 * 27 4 3 54 54 H 1.09002 * 109.46171 * 65.83843 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0847 1.3823 5 6 2.7805 1.1208 2.1418 6 6 3.1763 0.9363 3.6086 7 6 4.6832 0.6801 3.6973 8 6 5.0708 0.4388 5.1334 9 8 5.5775 -0.6149 5.4560 10 7 4.8542 1.3937 6.0595 11 6 4.2425 2.6666 5.6699 12 6 5.2314 1.1593 7.4555 13 6 6.6705 1.6274 7.6805 14 6 7.6106 0.8463 6.7601 15 6 6.7757 3.1214 7.3678 16 6 7.0647 1.3819 9.1384 17 7 8.4429 1.8296 9.3536 18 6 9.0164 1.7094 10.5913 19 1 8.4526 1.2849 11.4088 20 6 10.3221 2.1341 10.7954 21 7 11.0087 2.6528 9.7994 22 14 11.1043 1.9707 12.4838 23 1 10.1295 1.3616 13.4241 24 1 12.3079 1.1059 12.3902 25 1 11.4975 3.3143 12.9793 26 6 5.0337 -0.5522 2.8587 27 6 4.5841 -0.3245 1.4136 28 1 -1.0500 -0.0002 0.0001 29 1 3.0089 0.9209 -0.4579 30 1 3.0097 -0.8557 -0.5679 31 1 3.3093 1.9796 1.7282 32 1 1.7057 1.2893 2.0741 33 1 2.6373 0.0861 4.0267 34 1 2.9267 1.8373 4.1689 35 1 5.2232 1.5464 3.3149 36 1 3.1587 2.5911 5.7586 37 1 4.6062 3.4596 6.3233 38 1 4.5073 2.8962 4.6377 39 1 4.5616 1.7157 8.1112 40 1 5.1565 0.0949 7.6784 41 1 7.3300 1.0208 5.7214 42 1 8.6359 1.1801 6.9201 43 1 7.5358 -0.2181 6.9829 44 1 6.1059 3.6778 8.0235 45 1 7.8011 3.4548 7.5277 46 1 6.4950 3.2958 6.3292 47 1 6.3950 1.9381 9.7944 48 1 6.9899 0.3175 9.3607 49 1 8.9492 2.2112 8.6195 50 1 11.9213 2.9492 9.9419 51 1 4.5240 -1.4258 3.2650 52 1 6.1113 -0.7146 2.8832 53 1 4.8193 -1.2059 0.8170 54 1 5.1045 0.5410 1.0037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570691186.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:31 Heat of formation + Delta-G solvation = 15.381978 kcal Electronic energy + Delta-G solvation = -30079.569400 eV Core-core repulsion = 26245.448868 eV Total energy + Delta-G solvation = -3834.120532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.66392 -39.82077 -38.57492 -36.46139 -35.62992 -34.75664 -33.08651 -32.14723 -31.73286 -29.03045 -28.60701 -27.91460 -27.30899 -26.63499 -24.83440 -24.12293 -23.82075 -21.17448 -20.23342 -19.77490 -19.11842 -18.98630 -17.94063 -17.33442 -17.05414 -16.70822 -16.31461 -16.13246 -15.75788 -15.64301 -15.41931 -15.14009 -14.89472 -14.63256 -14.44615 -14.18267 -14.03680 -13.93175 -13.78272 -13.68122 -13.56086 -13.20320 -12.97339 -12.89456 -12.75313 -12.51287 -12.46616 -12.41942 -12.23762 -12.09914 -12.03205 -11.75362 -11.65369 -11.61408 -11.50895 -11.42155 -11.25069 -11.01358 -10.95093 -10.53795 -9.51689 -9.30467 -8.97434 -7.94979 -5.22664 1.45766 1.47133 1.57141 1.71615 1.79165 1.96556 2.09682 2.56237 3.09765 3.38276 3.49381 3.54987 3.77329 3.83064 3.87387 3.92801 3.98024 4.17525 4.22558 4.27392 4.34167 4.38911 4.46795 4.49079 4.54239 4.57725 4.61010 4.65351 4.68316 4.76206 4.82042 4.83823 4.88747 4.92024 4.93210 4.95480 4.98018 5.10497 5.15573 5.15950 5.17105 5.19770 5.24008 5.37371 5.44861 5.49079 5.55691 5.62517 6.05236 6.10793 6.27763 6.50195 6.75364 7.29096 7.34127 8.11294 8.35344 9.29006 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.033417 B = 0.002039 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.695706 B =13732.275857 C =14010.445805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.210 4.210 3 C 0.161 3.839 4 N -0.553 5.553 5 C 0.061 3.939 6 C -0.108 4.108 7 C -0.099 4.099 8 C 0.510 3.490 9 O -0.577 6.577 10 N -0.606 5.606 11 C 0.060 3.940 12 C 0.135 3.865 13 C -0.075 4.075 14 C -0.107 4.107 15 C -0.126 4.126 16 C 0.162 3.838 17 N -0.738 5.738 18 C -0.243 4.243 19 H 0.074 0.926 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.291 1.291 26 C -0.093 4.093 27 C 0.064 3.936 28 H 0.240 0.760 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.074 0.926 47 H 0.029 0.971 48 H 0.007 0.993 49 H 0.376 0.624 50 H 0.250 0.750 51 H 0.054 0.946 52 H 0.064 0.936 53 H 0.088 0.912 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.350 0.884 -22.303 32.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.211 4.211 3 C 0.035 3.965 4 N -0.279 5.279 5 C -0.066 4.066 6 C -0.146 4.146 7 C -0.120 4.120 8 C 0.299 3.701 9 O -0.457 6.457 10 N -0.337 5.337 11 C -0.081 4.081 12 C 0.012 3.988 13 C -0.077 4.077 14 C -0.164 4.164 15 C -0.183 4.183 16 C 0.035 3.965 17 N -0.382 5.382 18 C -0.375 4.375 19 H 0.092 0.908 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.191 1.191 24 H -0.223 1.223 25 H -0.218 1.218 26 C -0.132 4.132 27 C -0.063 4.063 28 H 0.257 0.743 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.025 0.975 49 H 0.209 0.791 50 H 0.059 0.941 51 H 0.073 0.927 52 H 0.083 0.917 53 H 0.106 0.894 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.320 -0.101 -21.722 31.870 hybrid contribution 1.455 0.391 0.564 1.609 sum -21.865 0.289 -21.158 30.427 Atomic orbital electron populations 1.25656 0.96849 1.00568 0.98580 1.23317 0.95053 1.00983 1.01726 1.19054 0.84759 1.02910 0.89749 1.61846 1.14559 1.38975 1.12476 1.22089 1.01192 0.90469 0.92888 1.21794 0.92106 1.03575 0.97093 1.21371 0.99148 1.01106 0.90393 1.21150 0.77228 0.83071 0.88618 1.90712 1.44919 1.27793 1.82228 1.47824 1.61055 1.17029 1.07823 1.22403 0.98809 0.84157 1.02729 1.21304 0.93683 1.01376 0.82466 1.20998 0.95739 0.96740 0.94204 1.21536 0.97917 0.98657 0.98302 1.21798 1.01163 0.93681 1.01681 1.20743 0.85895 0.95763 0.94075 1.42577 1.11318 1.74653 1.09647 1.19697 0.95913 1.32546 0.89320 0.90809 1.25558 0.97689 1.02436 1.01257 1.69832 1.10689 1.49346 1.32258 0.85059 0.78057 0.76881 0.79680 1.19119 1.22270 1.21780 1.21328 1.00789 0.96775 0.94297 1.22062 0.86192 1.01872 0.96173 0.74319 0.91123 0.87667 0.92995 0.90421 0.92571 0.87778 0.87008 0.90142 0.89795 0.89135 0.88102 0.91978 0.93071 0.95366 0.94804 0.91666 0.95092 0.90754 0.95314 0.97527 0.79067 0.94073 0.92672 0.91740 0.89406 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.45 19.25 74.32 1.43 -1.02 16 2 C -0.21 -3.03 12.34 31.13 0.38 -2.65 16 3 C 0.16 1.87 5.46 84.50 0.46 2.33 16 4 N -0.55 -7.76 4.63 -907.47 -4.21 -11.97 16 5 C 0.06 0.72 5.30 86.33 0.46 1.18 16 6 C -0.11 -1.43 5.00 30.65 0.15 -1.28 16 7 C -0.10 -1.69 1.78 -11.46 -0.02 -1.71 16 8 C 0.51 12.73 5.49 87.65 0.48 13.21 16 9 O -0.58 -20.01 13.75 -3.06 -0.04 -20.05 16 10 N -0.61 -12.91 2.40 -846.77 -2.03 -14.94 16 11 C 0.06 0.73 7.71 127.77 0.99 1.71 16 12 C 0.14 3.60 4.60 86.38 0.40 3.99 16 13 C -0.08 -2.51 0.60 -52.18 -0.03 -2.54 16 14 C -0.11 -4.06 6.96 71.98 0.50 -3.56 16 15 C -0.13 -3.78 7.05 71.98 0.51 -3.27 16 16 C 0.16 6.80 5.15 86.38 0.44 7.25 16 17 N -0.74 -38.88 5.01 -343.44 -1.72 -40.59 16 18 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.86 13.06 21.65 0.28 -60.57 16 22 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 C -0.09 -1.78 4.68 30.65 0.14 -1.64 16 27 C 0.06 0.86 5.46 86.33 0.47 1.33 16 28 H 0.24 1.31 7.80 -4.42 -0.03 1.27 16 29 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.11 1.01 7.99 -2.39 -0.02 0.99 16 31 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.08 0.96 7.11 -2.39 -0.02 0.94 16 33 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.10 0.92 4.65 -2.39 -0.01 0.91 16 35 H 0.11 1.50 7.40 -2.38 -0.02 1.48 16 36 H 0.08 0.65 7.01 -2.38 -0.02 0.63 16 37 H 0.08 1.00 6.04 -2.39 -0.01 0.99 16 38 H 0.09 0.76 5.99 -2.38 -0.01 0.75 16 39 H 0.10 2.16 8.07 -2.39 -0.02 2.15 16 40 H 0.06 1.94 7.42 -2.39 -0.02 1.92 16 41 H 0.05 1.77 6.15 -2.39 -0.01 1.75 16 42 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 43 H 0.03 1.41 7.73 -2.38 -0.02 1.39 16 44 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 45 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 46 H 0.07 1.78 5.99 -2.39 -0.01 1.76 16 47 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.38 20.99 5.36 -92.71 -0.50 20.49 16 50 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 51 H 0.05 1.33 8.04 -2.39 -0.02 1.31 16 52 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.09 1.05 8.02 -2.39 -0.02 1.03 16 54 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -76.26 407.72 2.76 -73.50 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.38 Total: 29.15 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 8.07 Total: -3.97 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -7.67 Total: -128.08 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.04 Total: -20.05 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -76.26 2.76 -73.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570691186.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.880 kcal (2) G-P(sol) polarization free energy of solvation -76.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds