Wall clock time and date at job start Tue Mar 31 2020 19:10:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31006 * 1
3 3 C 1.50702 * 119.99872 * 2 1
4 4 H 1.09004 * 109.46852 * 0.02562 * 3 2 1
5 5 C 1.53000 * 109.47031 * 120.00095 * 3 2 1
6 6 C 1.53007 * 109.47314 * 295.00191 * 5 3 2
7 7 C 1.52996 * 109.47430 * 240.00323 * 3 2 1
8 8 C 1.50700 * 109.47097 * 64.99695 * 7 3 2
9 9 O 1.21279 * 120.00266 * 0.02562 * 8 7 3
10 10 N 1.34775 * 119.99989 * 180.02562 * 8 7 3
11 11 C 1.47081 * 120.88300 * 180.02562 * 10 8 7
12 12 C 1.53234 * 108.52059 * 231.20500 * 11 10 8
13 13 N 1.46895 * 109.34290 * 306.16710 * 12 11 10
14 14 C 1.46903 * 111.00149 * 187.25030 * 13 12 11
15 15 H 1.08995 * 110.64225 * 298.31528 * 14 13 12
16 16 C 1.55154 * 110.71882 * 174.97808 * 14 13 12
17 17 C 1.54910 * 101.58031 * 206.13764 * 16 14 13
18 18 N 1.47426 * 104.83209 * 37.01037 * 17 16 14
19 19 C 1.36932 * 125.64638 * 155.89300 * 18 17 16
20 20 H 1.08001 * 119.99867 * 179.97438 * 19 18 17
21 21 C 1.38814 * 120.00333 * 359.97290 * 19 18 17
22 22 N 1.31623 * 119.99950 * 0.02562 * 21 19 18
23 23 Si 1.86803 * 120.00071 * 179.97438 * 21 19 18
24 24 H 1.48504 * 109.46961 * 60.00198 * 23 21 19
25 25 H 1.48502 * 109.46739 * 180.02562 * 23 21 19
26 26 H 1.48494 * 109.47214 * 300.00063 * 23 21 19
27 27 C 1.47019 * 108.70209 * 335.87354 * 18 17 16
28 28 C 1.46908 * 111.26676 * 63.10905 * 13 12 11
29 29 C 1.47081 * 120.88167 * 0.02562 * 10 8 7
30 30 H 1.07999 * 119.99686 * 179.97438 * 1 2 3
31 31 H 1.08002 * 120.00304 * 359.97438 * 1 2 3
32 32 H 1.07990 * 119.99942 * 180.02562 * 2 1 3
33 33 H 1.08994 * 109.46951 * 55.00055 * 5 3 2
34 34 H 1.09003 * 109.47139 * 175.00396 * 5 3 2
35 35 H 1.08995 * 109.47371 * 179.97438 * 6 5 3
36 36 H 1.09001 * 109.46953 * 300.00205 * 6 5 3
37 37 H 1.08996 * 109.46834 * 59.99344 * 6 5 3
38 38 H 1.09000 * 109.47067 * 305.00509 * 7 3 2
39 39 H 1.08995 * 109.47084 * 185.00134 * 7 3 2
40 40 H 1.08998 * 109.62655 * 111.49505 * 11 10 8
41 41 H 1.08999 * 109.62739 * 350.91935 * 11 10 8
42 42 H 1.08998 * 109.49537 * 186.20526 * 12 11 10
43 43 H 1.09004 * 109.49485 * 66.13208 * 12 11 10
44 44 H 1.09002 * 111.00945 * 88.06571 * 16 14 13
45 45 H 1.08999 * 111.00353 * 324.21109 * 16 14 13
46 46 H 1.08998 * 110.36709 * 278.17139 * 17 16 14
47 47 H 1.09005 * 110.36466 * 155.84673 * 17 16 14
48 48 H 0.96997 * 120.00161 * 180.02562 * 22 21 19
49 49 H 1.09001 * 109.88389 * 120.48020 * 27 18 17
50 50 H 1.09004 * 109.87600 * 241.48978 * 27 18 17
51 51 H 1.09000 * 109.49706 * 56.85132 * 28 13 12
52 52 H 1.09000 * 109.49136 * 176.93769 * 28 13 12
53 53 H 1.08994 * 109.63092 * 248.50216 * 29 10 8
54 54 H 1.09000 * 109.62848 * 9.08777 * 29 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 1 1.3551 2.1336 0.0005
5 6 2.9432 1.3862 1.2492
6 6 2.0565 1.4306 2.4954
7 6 2.9431 1.3863 -1.2492
8 6 2.0697 1.4302 -2.4765
9 8 0.8626 1.4000 -2.3632
10 7 2.6300 1.5029 -3.7001
11 6 1.7962 1.5473 -4.9109
12 6 2.2924 0.4721 -5.8833
13 7 3.7320 0.6515 -6.1138
14 6 4.2124 -0.2496 -7.1699
15 1 4.0680 -1.2908 -6.8818
16 6 5.7030 0.0322 -7.4958
17 6 5.7977 -0.4537 -8.9636
18 7 4.5106 -0.0703 -9.5718
19 6 4.2897 0.1385 -10.9070
20 1 3.3059 0.4175 -11.2544
21 6 5.3302 -0.0084 -11.8141
22 7 6.5291 -0.3489 -11.3908
23 14 5.0286 0.2757 -13.6355
24 1 4.5611 1.6691 -13.8484
25 1 6.2909 0.0563 -14.3864
26 1 3.9939 -0.6730 -14.1198
27 6 3.5036 0.0503 -8.5075
28 6 4.4975 0.4645 -4.8740
29 6 4.0916 1.5400 -3.8601
30 1 -0.5399 -0.9353 -0.0004
31 1 -0.5401 0.9353 0.0004
32 1 1.8500 -0.9352 -0.0004
33 1 3.5906 0.5106 1.2951
34 1 3.5540 2.2879 1.2056
35 1 2.6831 1.4879 3.3854
36 1 1.4090 2.3063 2.4495
37 1 1.4456 0.5290 2.5389
38 1 3.5905 0.5106 -1.2953
39 1 3.5539 2.2880 -1.2055
40 1 1.8794 2.5291 -5.3770
41 1 0.7569 1.3511 -4.6471
42 1 1.7585 0.5628 -6.8293
43 1 2.1124 -0.5149 -5.4571
44 1 6.3609 -0.5482 -6.8489
45 1 5.9246 1.0968 -7.4216
46 1 5.9259 -1.5356 -8.9975
47 1 6.6220 0.0431 -9.4753
48 1 7.2563 -0.4512 -12.0245
49 1 3.0982 1.0620 -8.4937
50 1 2.7010 -0.6683 -8.6736
51 1 4.2869 -0.5222 -4.4617
52 1 5.5629 0.5500 -5.0879
53 1 4.3952 2.5211 -4.2254
54 1 4.5701 1.3389 -2.9016
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699808453.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:10:36
Heat of formation + Delta-G solvation = -2.122815 kcal
Electronic energy + Delta-G solvation = -29807.701832 eV
Core-core repulsion = 25972.822235 eV
Total energy + Delta-G solvation = -3834.879597 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.35212 -39.99408 -38.28936 -37.38563 -35.56150 -33.84667 -32.62833 -32.58631
-31.14097 -30.95403 -29.31503 -27.47560 -26.18943 -25.39541 -24.40939 -22.56814
-22.37134 -21.82278 -21.08782 -20.49515 -19.78812 -18.92847 -18.15754 -17.10022
-16.94411 -16.70058 -16.45364 -15.98866 -15.87520 -15.73315 -15.53321 -15.27416
-14.95435 -14.66995 -14.46158 -14.37931 -14.19961 -13.82500 -13.46495 -13.38551
-13.34475 -13.00795 -12.91749 -12.81317 -12.70317 -12.59923 -12.48187 -12.29671
-12.08882 -12.02810 -12.00794 -11.82159 -11.71502 -11.64828 -11.54449 -11.38951
-11.33833 -10.75761 -10.73090 -10.02477 -9.74144 -9.25055 -8.88144 -7.76788
-5.21126 1.46810 1.49994 1.54856 1.56351 1.73195 2.01087 2.48995
2.82160 3.33172 3.54285 3.69733 3.76990 3.85937 3.92940 3.95429
4.01749 4.12726 4.24066 4.29274 4.34294 4.38880 4.40850 4.42622
4.47476 4.51776 4.59848 4.66947 4.69898 4.74143 4.76244 4.85598
4.88019 4.91446 5.02378 5.03346 5.04523 5.07930 5.09165 5.12427
5.14928 5.21976 5.41897 5.46368 5.48750 5.49363 5.66262 5.81206
5.85003 6.05626 6.06531 6.12633 6.32553 6.50370 7.11784 7.24976
7.78815 8.42456 9.24848
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.033049 B = 0.002025 C = 0.001964
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 847.020465 B =13823.777358 C =14256.094296
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.148 4.148
3 C -0.043 4.043
4 H 0.060 0.940
5 C -0.111 4.111
6 C -0.153 4.153
7 C -0.128 4.128
8 C 0.507 3.493
9 O -0.574 6.574
10 N -0.617 5.617
11 C 0.125 3.875
12 C 0.047 3.953
13 N -0.530 5.530
14 C 0.090 3.910
15 H 0.043 0.957
16 C -0.112 4.112
17 C 0.153 3.847
18 N -0.625 5.625
19 C -0.240 4.240
20 H 0.077 0.923
21 C -0.066 4.066
22 N -0.947 5.947
23 Si 0.981 3.019
24 H -0.277 1.277
25 H -0.291 1.291
26 H -0.280 1.280
27 C 0.145 3.855
28 C 0.038 3.962
29 C 0.115 3.885
30 H 0.091 0.909
31 H 0.082 0.918
32 H 0.110 0.890
33 H 0.074 0.926
34 H 0.078 0.922
35 H 0.063 0.937
36 H 0.047 0.953
37 H 0.048 0.952
38 H 0.114 0.886
39 H 0.121 0.879
40 H 0.074 0.926
41 H 0.082 0.918
42 H 0.080 0.920
43 H 0.029 0.971
44 H 0.085 0.915
45 H 0.071 0.929
46 H -0.015 1.015
47 H 0.075 0.925
48 H 0.248 0.752
49 H 0.032 0.968
50 H 0.012 0.988
51 H 0.036 0.964
52 H 0.101 0.899
53 H 0.083 0.917
54 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.704 3.653 27.552 28.039
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.166 4.166
3 C -0.062 4.062
4 H 0.079 0.921
5 C -0.148 4.148
6 C -0.210 4.210
7 C -0.167 4.167
8 C 0.297 3.703
9 O -0.453 6.453
10 N -0.350 5.350
11 C 0.002 3.998
12 C -0.082 4.082
13 N -0.255 5.255
14 C -0.018 4.018
15 H 0.061 0.939
16 C -0.151 4.151
17 C 0.027 3.973
18 N -0.352 5.352
19 C -0.369 4.369
20 H 0.095 0.905
21 C -0.259 4.259
22 N -0.597 5.597
23 Si 0.809 3.191
24 H -0.203 1.203
25 H -0.217 1.217
26 H -0.207 1.207
27 C 0.019 3.981
28 C -0.090 4.090
29 C -0.007 4.007
30 H 0.110 0.890
31 H 0.100 0.900
32 H 0.128 0.872
33 H 0.093 0.907
34 H 0.097 0.903
35 H 0.082 0.918
36 H 0.066 0.934
37 H 0.067 0.933
38 H 0.132 0.868
39 H 0.139 0.861
40 H 0.092 0.908
41 H 0.101 0.899
42 H 0.098 0.902
43 H 0.047 0.953
44 H 0.103 0.897
45 H 0.090 0.910
46 H 0.003 0.997
47 H 0.093 0.907
48 H 0.057 0.943
49 H 0.050 0.950
50 H 0.030 0.970
51 H 0.055 0.945
52 H 0.120 0.880
53 H 0.101 0.899
54 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -4.174 4.116 27.280 27.903
hybrid contribution -0.588 -1.086 -1.411 1.876
sum -4.763 3.030 25.869 26.477
Atomic orbital electron populations
1.23686 0.96569 1.00837 1.00934 1.22856 0.95826 0.98103 0.99764
1.20155 0.96572 0.95592 0.93864 0.92103 1.21520 0.97535 1.03227
0.92507 1.21769 0.99932 1.01423 0.97888 1.21808 0.98317 1.06399
0.90178 1.21361 0.89006 0.74798 0.85143 1.90687 1.16670 1.51307
1.86665 1.48357 1.08141 1.72952 1.05592 1.21501 0.95213 0.98909
0.84220 1.22403 0.89105 0.97186 0.99495 1.61965 1.03132 1.52952
1.07467 1.22370 0.95825 0.93284 0.90343 0.93903 1.22857 0.94217
1.01543 0.96474 1.21748 0.90064 0.95008 0.90442 1.44738 1.07077
1.81032 1.02329 1.19388 0.95747 1.39213 0.82585 0.90479 1.25626
0.95606 1.02232 1.02427 1.70030 1.01136 1.55168 1.33373 0.85123
0.76470 0.78123 0.79422 1.20286 1.21714 1.20652 1.21328 0.91407
0.97684 0.87657 1.22605 0.99654 0.97767 0.89017 1.22053 0.78407
0.99751 1.00466 0.89021 0.89990 0.87208 0.90688 0.90313 0.91825
0.93426 0.93332 0.86753 0.86115 0.90813 0.89941 0.90175 0.95256
0.89655 0.90988 0.99663 0.90659 0.94257 0.95038 0.97035 0.94548
0.88049 0.89908 0.85901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.65 13.22 67.77 0.90 -2.76 16
2 C -0.15 -2.51 6.76 25.64 0.17 -2.34 16
3 C -0.04 -0.60 1.82 -11.54 -0.02 -0.62 16
4 H 0.06 1.11 7.60 -2.38 -0.02 1.09 16
5 C -0.11 -1.02 5.39 30.60 0.16 -0.86 16
6 C -0.15 -1.63 9.73 71.98 0.70 -0.93 16
7 C -0.13 -1.51 3.53 29.85 0.11 -1.40 16
8 C 0.51 10.39 7.46 87.66 0.65 11.04 16
9 O -0.57 -16.21 13.62 -3.03 -0.04 -16.25 16
10 N -0.62 -12.15 3.01 -817.89 -2.46 -14.61 16
11 C 0.12 2.91 6.60 86.35 0.57 3.48 16
12 C 0.05 1.20 5.45 86.38 0.47 1.67 16
13 N -0.53 -14.15 4.45 -863.02 -3.84 -17.99 16
14 C 0.09 3.03 2.65 46.10 0.12 3.15 16
15 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
16 C -0.11 -3.98 5.38 31.99 0.17 -3.81 16
17 C 0.15 7.50 5.89 86.86 0.51 8.01 16
18 N -0.63 -32.81 3.39 -691.99 -2.35 -35.16 16
19 C -0.24 -13.72 10.27 84.03 0.86 -12.86 16
20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16
21 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16
22 N -0.95 -56.44 10.09 21.65 0.22 -56.22 16
23 Si 0.98 45.98 29.55 68.60 2.03 48.00 16
24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16
26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
27 C 0.14 6.12 5.70 86.73 0.49 6.61 16
28 C 0.04 0.73 5.47 86.39 0.47 1.20 16
29 C 0.12 1.67 6.51 86.36 0.56 2.23 16
30 H 0.09 1.69 8.06 -2.91 -0.02 1.67 16
31 H 0.08 1.81 7.83 -2.91 -0.02 1.79 16
32 H 0.11 1.64 8.06 -2.92 -0.02 1.62 16
33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16
34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16
35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
37 H 0.05 0.60 7.38 -2.39 -0.02 0.58 16
38 H 0.11 0.92 7.66 -2.39 -0.02 0.90 16
39 H 0.12 0.84 8.00 -2.39 -0.02 0.82 16
40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
41 H 0.08 2.10 7.06 -2.39 -0.02 2.08 16
42 H 0.08 2.21 6.78 -2.39 -0.02 2.19 16
43 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16
44 H 0.08 2.50 7.93 -2.39 -0.02 2.48 16
45 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16
46 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16
47 H 0.08 4.20 5.87 -2.38 -0.01 4.19 16
48 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16
49 H 0.03 1.35 7.70 -2.39 -0.02 1.33 16
50 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16
51 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16
52 H 0.10 1.80 6.80 -2.39 -0.02 1.78 16
53 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
54 H 0.12 0.89 6.02 -2.39 -0.01 0.88 16
Total: -1.00 -71.01 409.33 1.77 -69.24
By element:
Atomic # 1 Polarization: 13.66 SS G_CDS: 0.84 Total: 14.49 kcal
Atomic # 6 Polarization: 1.12 SS G_CDS: 7.38 Total: 8.50 kcal
Atomic # 7 Polarization: -115.54 SS G_CDS: -8.43 Total: -123.98 kcal
Atomic # 8 Polarization: -16.21 SS G_CDS: -0.04 Total: -16.25 kcal
Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal
Total: -71.01 1.77 -69.24 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699808453.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.117 kcal
(2) G-P(sol) polarization free energy of solvation -71.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds