Wall clock time and date at job start Tue Mar 31 2020 18:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47279 * 2 1 4 4 C 1.36769 * 125.79951 * 269.99758 * 3 2 1 5 5 C 1.47263 * 126.93976 * 359.97438 * 4 3 2 6 6 O 1.21629 * 120.00374 * 7.23474 * 5 4 3 7 7 N 1.34773 * 119.99913 * 187.23909 * 5 4 3 8 8 C 1.46501 * 119.99996 * 6.29036 * 7 5 4 9 9 C 1.46509 * 120.00300 * 186.29489 * 7 5 4 10 10 C 1.53002 * 109.46500 * 269.99922 * 9 7 5 11 11 C 1.53001 * 109.46507 * 179.97438 * 10 9 7 12 12 H 1.09009 * 109.47433 * 55.00284 * 11 10 9 13 13 N 1.46499 * 109.47542 * 294.99857 * 11 10 9 14 14 C 1.36939 * 120.00331 * 154.99663 * 13 11 10 15 15 H 1.08000 * 119.99775 * 0.02562 * 14 13 11 16 16 C 1.38808 * 120.00146 * 180.02562 * 14 13 11 17 17 N 1.31614 * 120.00013 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99895 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47105 * 89.99982 * 18 16 14 20 20 H 1.48499 * 109.47165 * 209.99598 * 18 16 14 21 21 H 1.48495 * 109.47428 * 329.99888 * 18 16 14 22 22 C 1.52999 * 109.47039 * 174.99815 * 11 10 9 23 23 C 1.53000 * 109.47373 * 299.99952 * 22 11 10 24 24 C 1.52999 * 109.47019 * 60.00396 * 22 11 10 25 25 C 1.46680 * 106.11401 * 179.71442 * 4 3 2 26 26 C 1.34476 * 106.33521 * 0.26249 * 25 4 3 27 27 N 1.34658 * 125.80450 * 90.16081 * 3 2 1 28 28 C 1.46500 * 124.84864 * 0.02562 * 27 3 2 29 29 H 1.09004 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47238 * 300.00630 * 1 2 3 31 31 H 1.09004 * 109.46748 * 60.00078 * 1 2 3 32 32 H 1.09000 * 109.47238 * 239.99370 * 2 1 3 33 33 H 1.09009 * 109.46520 * 119.99490 * 2 1 3 34 34 H 1.08994 * 109.47208 * 275.86372 * 8 7 5 35 35 H 1.09000 * 109.46932 * 35.86504 * 8 7 5 36 36 H 1.09002 * 109.47360 * 155.86122 * 8 7 5 37 37 H 1.09001 * 109.46778 * 150.00060 * 9 7 5 38 38 H 1.08995 * 109.46556 * 29.99364 * 9 7 5 39 39 H 1.09001 * 109.47492 * 60.00575 * 10 9 7 40 40 H 1.08994 * 109.47589 * 299.99439 * 10 9 7 41 41 H 0.97000 * 119.99693 * 335.00352 * 13 11 10 42 42 H 0.96998 * 120.00363 * 180.02562 * 17 16 14 43 43 H 1.09007 * 109.47170 * 179.97438 * 22 11 10 44 44 H 1.09006 * 109.46544 * 60.00122 * 23 22 11 45 45 H 1.09004 * 109.46955 * 179.97438 * 23 22 11 46 46 H 1.08998 * 109.47381 * 300.00115 * 23 22 11 47 47 H 1.08998 * 109.47566 * 59.99595 * 24 22 11 48 48 H 1.09000 * 109.47048 * 179.97438 * 24 22 11 49 49 H 1.08994 * 109.46808 * 299.99929 * 24 22 11 50 50 H 1.08007 * 126.82985 * 180.29068 * 25 4 3 51 51 H 1.08008 * 125.57527 * 179.97438 * 26 25 4 52 52 H 1.09001 * 109.47339 * 270.30636 * 28 27 3 53 53 H 1.08997 * 109.47210 * 30.31422 * 28 27 3 54 54 H 1.09003 * 109.46973 * 150.30956 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2992 2.1751 -1.1093 5 6 2.1541 1.7629 -2.5156 6 8 1.6367 0.6960 -2.7864 7 7 2.5947 2.5679 -3.5026 8 6 3.3401 3.7862 -3.1765 9 6 2.3281 2.2248 -4.9018 10 6 3.4713 1.3634 -5.4422 11 6 3.1926 1.0045 -6.9032 12 1 3.0274 1.9169 -7.4764 13 7 1.9997 0.1575 -6.9791 14 6 1.2569 0.1223 -8.1290 15 1 1.5507 0.7187 -8.9801 16 6 0.1264 -0.6799 -8.2007 17 7 -0.5873 -0.7140 -9.3061 18 14 -0.3822 -1.7109 -6.7284 19 1 -1.2995 -0.9235 -5.8658 20 1 -1.0755 -2.9371 -7.1984 21 1 0.8239 -2.0917 -5.9503 22 6 4.3916 0.2497 -7.4806 23 6 5.6375 1.1343 -7.4015 24 6 4.6235 -1.0310 -6.6762 25 6 2.7529 3.4795 -0.6152 26 6 2.7289 3.4047 0.7273 27 7 2.2979 2.1625 1.0921 28 6 2.1403 1.7035 2.4744 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.6404 4.5921 -2.9554 35 1 3.9711 3.6041 -2.3065 36 1 3.9636 4.0688 -4.0247 37 1 2.2513 3.1383 -5.4916 38 1 1.3924 1.6698 -4.9678 39 1 3.5481 0.4499 -4.8525 40 1 4.4070 1.9183 -5.3762 41 1 1.7360 -0.3784 -6.2148 42 1 -1.3775 -1.2743 -9.3561 43 1 4.1929 -0.0064 -8.5214 44 1 5.8360 1.3899 -6.3605 45 1 6.4918 0.5962 -7.8124 46 1 5.4723 2.0466 -7.9745 47 1 3.7359 -1.6612 -6.7326 48 1 5.4774 -1.5690 -7.0878 49 1 4.8219 -0.7754 -5.6354 50 1 3.0473 4.3308 -1.2111 51 1 3.0058 4.1980 1.4059 52 1 1.1305 1.9270 2.8185 53 1 2.3107 0.6280 2.5217 54 1 2.8626 2.2141 3.1114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700505732.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:59 Heat of formation + Delta-G solvation = 5.578255 kcal Electronic energy + Delta-G solvation = -30641.758078 eV Core-core repulsion = 26807.212424 eV Total energy + Delta-G solvation = -3834.545654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.38010 -40.40200 -38.97522 -36.62564 -35.10643 -34.54082 -33.89776 -32.91088 -31.62283 -29.34296 -28.19820 -27.90830 -27.50253 -26.51380 -24.77413 -24.18557 -23.53064 -22.25150 -20.95913 -20.07492 -19.55515 -19.26287 -17.96556 -17.08035 -16.91397 -16.78049 -16.56700 -16.27068 -15.72120 -15.46273 -15.25814 -14.99714 -14.93008 -14.88851 -14.51819 -14.38486 -14.25905 -13.95946 -13.83993 -13.56358 -13.37804 -13.20212 -13.06381 -12.98722 -12.91321 -12.83737 -12.76250 -12.62563 -12.37821 -12.22991 -12.14969 -11.97004 -11.88933 -11.81381 -11.68155 -11.48017 -11.17991 -10.91819 -10.67825 -9.63059 -9.45399 -9.21156 -9.02913 -8.01868 -5.29708 0.78696 1.31802 1.36252 1.42317 1.57771 1.91662 2.32068 2.46090 2.60766 3.30594 3.65308 3.70022 3.88597 3.99759 4.02605 4.04857 4.11668 4.21828 4.31408 4.35908 4.38788 4.42025 4.45324 4.49947 4.57568 4.58575 4.63698 4.69754 4.72061 4.77736 4.82180 4.85017 4.90385 4.94924 4.96040 5.04151 5.06122 5.12539 5.16721 5.23549 5.25890 5.31561 5.35883 5.39563 5.60031 5.64644 5.72255 5.83624 5.84793 6.15018 6.24681 6.41050 6.63236 7.10933 7.40847 7.90816 8.07850 9.20367 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.011758 B = 0.003583 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.744551 B = 7813.512147 C = 9187.360361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C 0.092 3.908 4 C -0.263 4.263 5 C 0.571 3.429 6 O -0.593 6.593 7 N -0.612 5.612 8 C 0.068 3.932 9 C 0.125 3.875 10 C -0.121 4.121 11 C 0.184 3.816 12 H 0.051 0.949 13 N -0.748 5.748 14 C -0.208 4.208 15 H 0.066 0.934 16 C -0.057 4.057 17 N -0.982 5.982 18 Si 0.938 3.062 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.268 1.268 22 C -0.111 4.111 23 C -0.135 4.135 24 C -0.133 4.133 25 C -0.192 4.192 26 C -0.010 4.010 27 N -0.440 5.440 28 C 0.058 3.942 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.098 0.902 41 H 0.359 0.641 42 H 0.255 0.745 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.025 0.975 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.178 0.822 51 H 0.206 0.794 52 H 0.085 0.915 53 H 0.090 0.910 54 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.650 11.922 28.321 33.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.026 4.026 4 C -0.273 4.273 5 C 0.363 3.637 6 O -0.475 6.475 7 N -0.343 5.343 8 C -0.073 4.073 9 C 0.002 3.998 10 C -0.160 4.160 11 C 0.076 3.924 12 H 0.069 0.931 13 N -0.390 5.390 14 C -0.339 4.339 15 H 0.084 0.916 16 C -0.248 4.248 17 N -0.634 5.634 18 Si 0.769 3.231 19 H -0.219 1.219 20 H -0.220 1.220 21 H -0.194 1.194 22 C -0.132 4.132 23 C -0.192 4.192 24 C -0.190 4.190 25 C -0.215 4.215 26 C -0.136 4.136 27 N -0.115 5.115 28 C -0.082 4.082 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.117 0.883 41 H 0.192 0.808 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.044 0.956 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.195 0.805 51 H 0.222 0.778 52 H 0.103 0.897 53 H 0.109 0.891 54 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.310 11.386 28.340 33.316 hybrid contribution -1.130 -1.145 -0.034 1.609 sum 12.180 10.242 28.306 32.472 Atomic orbital electron populations 1.21566 0.94205 1.02217 1.01084 1.20194 0.96549 0.89587 1.03445 1.20329 1.01320 0.94871 0.86128 1.20199 1.18006 0.98320 0.90765 1.18033 0.77084 0.82953 0.85597 1.90747 1.47265 1.24585 1.84927 1.47738 1.55963 1.25239 1.05345 1.22537 0.96267 0.85090 1.03444 1.21326 0.98205 0.99562 0.80713 1.22113 0.99159 0.99606 0.95105 1.20430 0.85258 0.92364 0.94393 0.93082 1.42931 1.29466 1.53239 1.13340 1.19065 1.03196 1.19517 0.92131 0.91601 1.25188 0.98683 1.02158 0.98798 1.69829 1.19967 1.45590 1.28033 0.85654 0.78206 0.78911 0.80361 1.21902 1.22012 1.19381 1.21625 0.96406 0.96437 0.98765 1.21801 0.95908 0.99145 1.02377 1.21676 1.00049 0.97444 0.99818 1.22937 1.07154 0.96891 0.94513 1.22400 1.06504 0.88306 0.96420 1.43816 1.49575 1.11403 1.06747 1.22423 1.04808 1.02767 0.78195 0.91400 0.91437 0.95303 0.91323 0.88796 0.91278 0.88774 0.89575 0.89192 0.93843 0.93555 0.88339 0.80850 0.93592 0.94022 0.91338 0.92295 0.92294 0.95581 0.92353 0.92546 0.80469 0.77764 0.89670 0.89141 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.90 71.98 0.71 -2.46 16 2 C -0.06 -1.42 5.50 29.85 0.16 -1.26 16 3 C 0.09 2.19 6.14 41.78 0.26 2.44 16 4 C -0.26 -7.17 6.04 -19.04 -0.12 -7.28 16 5 C 0.57 19.83 7.64 86.62 0.66 20.49 16 6 O -0.59 -25.98 14.56 -4.12 -0.06 -26.04 16 7 N -0.61 -17.96 2.87 -850.83 -2.44 -20.40 16 8 C 0.07 1.21 8.65 127.77 1.11 2.32 16 9 C 0.12 4.26 5.22 86.38 0.45 4.71 16 10 C -0.12 -3.98 4.36 30.60 0.13 -3.85 16 11 C 0.18 7.17 2.11 44.99 0.09 7.26 16 12 H 0.05 2.02 8.08 -2.38 -0.02 2.00 16 13 N -0.75 -37.42 3.61 -322.93 -1.17 -38.59 16 14 C -0.21 -12.33 10.41 84.03 0.87 -11.45 16 15 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 16 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 17 N -0.98 -65.80 13.97 21.65 0.30 -65.50 16 18 Si 0.94 51.66 27.74 68.60 1.90 53.56 16 19 H -0.29 -16.29 7.11 99.48 0.71 -15.58 16 20 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 21 H -0.27 -14.27 6.52 99.48 0.65 -13.62 16 22 C -0.11 -3.92 2.91 -10.79 -0.03 -3.95 16 23 C -0.13 -3.44 8.85 71.98 0.64 -2.80 16 24 C -0.13 -4.65 8.68 71.98 0.63 -4.02 16 25 C -0.19 -3.50 8.84 23.62 0.21 -3.29 16 26 C -0.01 -0.13 11.34 83.11 0.94 0.81 16 27 N -0.44 -6.82 3.09 -533.20 -1.65 -8.47 16 28 C 0.06 0.37 10.81 127.77 1.38 1.75 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 2.14 6.64 -2.39 -0.02 2.13 16 33 H 0.09 1.56 6.92 -2.38 -0.02 1.55 16 34 H 0.07 1.04 7.32 -2.39 -0.02 1.02 16 35 H 0.09 1.45 5.37 -2.39 -0.01 1.44 16 36 H 0.09 1.22 8.03 -2.39 -0.02 1.20 16 37 H 0.09 2.69 8.07 -2.39 -0.02 2.67 16 38 H 0.04 1.91 7.13 -2.39 -0.02 1.89 16 39 H 0.05 1.74 6.71 -2.39 -0.02 1.72 16 40 H 0.10 2.54 6.17 -2.39 -0.01 2.53 16 41 H 0.36 18.80 5.66 -92.71 -0.52 18.28 16 42 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 43 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.07 1.52 6.32 -2.38 -0.02 1.50 16 45 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.02 1.07 7.60 -2.39 -0.02 1.05 16 48 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.06 1.83 6.54 -2.39 -0.02 1.81 16 50 H 0.18 2.33 4.81 -2.91 -0.01 2.31 16 51 H 0.21 0.99 8.06 -2.91 -0.02 0.96 16 52 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 53 H 0.09 0.50 6.88 -2.39 -0.02 0.48 16 54 H 0.11 0.13 8.13 -2.39 -0.02 0.11 16 Total: -1.00 -84.76 415.44 5.76 -79.00 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.30 Total: 30.13 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 8.57 Total: -3.70 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -4.95 Total: -132.96 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.04 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 1.90 Total: 53.56 kcal Total: -84.76 5.76 -79.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700505732.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.578 kcal (2) G-P(sol) polarization free energy of solvation -84.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds