Wall clock time and date at job start Tue Mar 31 2020 18:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.47102 * 119.99796 * 2 1 4 4 O 1.21618 * 119.99875 * 77.08303 * 3 2 1 5 5 N 1.34784 * 120.00223 * 257.08361 * 3 2 1 6 6 C 1.46493 * 119.99843 * 5.02823 * 5 3 2 7 7 C 1.46497 * 119.99891 * 185.03096 * 5 3 2 8 8 C 1.53001 * 109.47329 * 89.99855 * 7 5 3 9 9 N 1.46899 * 109.47083 * 179.97438 * 8 7 5 10 10 C 1.46903 * 110.99674 * 170.00247 * 9 8 7 11 11 C 1.53240 * 109.33817 * 172.74498 * 10 9 8 12 12 N 1.47081 * 108.52090 * 53.82700 * 11 10 9 13 13 C 1.36936 * 120.87920 * 128.79533 * 12 11 10 14 14 H 1.08005 * 119.99783 * 210.66769 * 13 12 11 15 15 C 1.38805 * 120.00053 * 30.66933 * 13 12 11 16 16 N 1.31610 * 120.00268 * 9.87732 * 15 13 12 17 17 Si 1.86806 * 119.99961 * 189.87992 * 15 13 12 18 18 H 1.48498 * 109.47104 * 59.99538 * 17 15 13 19 19 H 1.48499 * 109.47541 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46741 * 299.99997 * 17 15 13 21 21 C 1.47083 * 118.23918 * 308.81252 * 12 11 10 22 22 C 1.46887 * 111.00182 * 45.69741 * 9 8 7 23 23 C 1.32991 * 120.00146 * 180.02562 * 2 1 3 24 24 C 1.51451 * 126.34014 * 179.68509 * 23 2 1 25 25 C 1.54274 * 106.85128 * 180.24389 * 24 23 2 26 26 C 1.54988 * 103.66336 * 23.48292 * 25 24 23 27 27 C 1.51843 * 126.34180 * 0.02562 * 23 2 1 28 28 H 1.08996 * 109.46887 * 95.14211 * 1 2 3 29 29 H 1.08997 * 109.46742 * 215.14104 * 1 2 3 30 30 H 1.08996 * 109.46767 * 335.14196 * 1 2 3 31 31 H 1.09006 * 109.46938 * 275.11153 * 6 5 3 32 32 H 1.09001 * 109.47638 * 35.10721 * 6 5 3 33 33 H 1.08998 * 109.47345 * 155.11395 * 6 5 3 34 34 H 1.09000 * 109.47323 * 329.99666 * 7 5 3 35 35 H 1.09002 * 109.47119 * 209.99996 * 7 5 3 36 36 H 1.09000 * 109.47072 * 59.99658 * 8 7 5 37 37 H 1.09002 * 109.47135 * 300.00132 * 8 7 5 38 38 H 1.08998 * 109.49504 * 52.78247 * 10 9 8 39 39 H 1.09005 * 109.48968 * 292.70193 * 10 9 8 40 40 H 1.09002 * 109.63099 * 173.53907 * 11 10 9 41 41 H 1.09001 * 109.63019 * 293.92552 * 11 10 9 42 42 H 0.97008 * 120.00086 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.62975 * 170.89049 * 21 12 11 44 44 H 1.09004 * 109.62738 * 291.48016 * 21 12 11 45 45 H 1.09006 * 109.49605 * 67.29437 * 22 9 8 46 46 H 1.08998 * 109.51722 * 307.22391 * 22 9 8 47 47 H 1.09000 * 109.98397 * 299.72995 * 24 23 2 48 48 H 1.09007 * 109.98389 * 61.03147 * 24 23 2 49 49 H 1.09003 * 110.79399 * 264.86434 * 25 24 23 50 50 H 1.08996 * 110.43161 * 141.93734 * 25 24 23 51 51 H 1.08991 * 110.83456 * 204.49438 * 26 25 24 52 52 H 1.08993 * 110.82948 * 80.91198 * 26 25 24 53 53 H 1.09005 * 110.43489 * 274.92428 * 27 23 2 54 54 H 1.08996 * 110.44084 * 37.32065 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3426 1.9183 1.0266 5 7 2.8054 1.7272 -1.1377 6 6 2.5926 1.0092 -2.3967 7 6 3.6301 2.9378 -1.1151 8 6 5.0877 2.5571 -0.8477 9 7 5.9147 3.7710 -0.8257 10 6 7.2695 3.4761 -0.3404 11 6 8.1488 4.7207 -0.5027 12 7 7.4833 5.8525 0.1600 13 6 8.1547 6.6308 1.0648 14 1 7.6191 7.0967 1.8788 15 6 9.5236 6.8210 0.9357 16 7 10.1438 6.4205 -0.1538 17 14 10.4856 7.6454 2.3085 18 1 10.3498 6.8498 3.5550 19 1 11.9187 7.7281 1.9283 20 1 9.9530 9.0132 2.5339 21 6 6.0773 6.1261 -0.1745 22 6 5.2797 4.8261 -0.0251 23 6 2.1720 -1.1517 -0.0005 24 6 3.6773 -1.3189 -0.0073 25 6 3.9587 -2.8358 -0.0114 26 6 2.6648 -3.4466 -0.6072 27 6 1.5628 -2.5425 -0.0017 28 1 -0.3633 -0.0921 -1.0235 29 1 -0.3633 -0.8404 0.5915 30 1 -0.3633 0.9324 0.4320 31 1 3.3186 0.2005 -2.4810 32 1 1.5843 0.5954 -2.4132 33 1 2.7167 1.6973 -3.2329 34 1 3.2778 3.6028 -0.3267 35 1 3.5577 3.4448 -2.0774 36 1 5.4400 1.8920 -1.6361 37 1 5.1601 2.0501 0.1145 38 1 7.6921 2.6543 -0.9183 39 1 7.2259 3.1964 0.7123 40 1 9.1203 4.5455 -0.0406 41 1 8.2814 4.9396 -1.5623 42 1 11.1006 6.5531 -0.2438 43 1 5.6793 6.8800 0.5047 44 1 6.0081 6.4820 -1.2025 45 1 5.2638 4.5276 1.0232 46 1 4.2592 4.9836 -0.3739 47 1 4.0994 -0.8572 -0.8999 48 1 4.1066 -0.8649 0.8859 49 1 4.1234 -3.2016 1.0021 50 1 4.8161 -3.0619 -0.6453 51 1 2.5396 -4.4800 -0.2841 52 1 2.6686 -3.3770 -1.6949 53 1 1.3293 -2.8566 1.0157 54 1 0.6663 -2.5649 -0.6213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713741737.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:49 Heat of formation + Delta-G solvation = -14.360764 kcal Electronic energy + Delta-G solvation = -30194.460108 eV Core-core repulsion = 26359.049834 eV Total energy + Delta-G solvation = -3835.410274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.35015 -39.83174 -38.91088 -37.10615 -35.97119 -34.45417 -33.33363 -31.94541 -30.52304 -29.90500 -28.52543 -28.15391 -27.46370 -25.65327 -24.73200 -24.15455 -22.89510 -21.62693 -21.10141 -20.76789 -18.95285 -18.79700 -17.74521 -17.46448 -16.99124 -16.64320 -16.43740 -16.23917 -15.90981 -15.54497 -15.36129 -15.24692 -15.11656 -14.70647 -14.43247 -14.38800 -14.17637 -13.95152 -13.89950 -13.40577 -13.30674 -13.19212 -13.11873 -13.04211 -12.96885 -12.72542 -12.64275 -12.39961 -12.19211 -12.14866 -12.07808 -12.03644 -11.96302 -11.88190 -11.57248 -11.49613 -11.48876 -10.90979 -10.61846 -9.78112 -9.69121 -9.39639 -8.65616 -7.89701 -5.40677 0.72925 1.44041 1.46570 1.51630 1.53453 1.95728 2.47811 2.98348 3.26585 3.33567 3.63045 3.67713 3.77667 3.88989 4.00258 4.09265 4.15548 4.22118 4.26838 4.30890 4.36822 4.41047 4.43456 4.49839 4.55780 4.62571 4.63482 4.67879 4.72377 4.77077 4.81138 4.81500 4.82363 4.88256 4.93214 4.95790 4.98219 5.02037 5.09038 5.14208 5.15780 5.20716 5.33300 5.38015 5.42616 5.46788 5.57642 5.66009 5.70403 6.06376 6.13049 6.29137 6.37070 7.05084 7.11782 7.79806 8.35927 9.16613 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.002386 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.156734 B =11732.703303 C =12220.897158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.179 4.179 3 C 0.555 3.445 4 O -0.591 6.591 5 N -0.605 5.605 6 C 0.076 3.924 7 C 0.115 3.885 8 C 0.054 3.946 9 N -0.528 5.528 10 C 0.051 3.949 11 C 0.189 3.811 12 N -0.616 5.616 13 C -0.270 4.270 14 H 0.062 0.938 15 C -0.048 4.048 16 N -0.934 5.934 17 Si 0.972 3.028 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.146 3.854 22 C 0.050 3.950 23 C -0.073 4.073 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.089 4.089 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.005 0.995 38 H 0.084 0.916 39 H 0.008 0.992 40 H 0.058 0.942 41 H 0.006 0.994 42 H 0.252 0.748 43 H 0.057 0.943 44 H 0.026 0.974 45 H 0.006 0.994 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.080 0.920 53 H 0.085 0.915 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.899 -22.595 -7.163 31.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.182 4.182 3 C 0.345 3.655 4 O -0.472 6.472 5 N -0.337 5.337 6 C -0.066 4.066 7 C -0.008 4.008 8 C -0.075 4.075 9 N -0.253 5.253 10 C -0.079 4.079 11 C 0.063 3.937 12 N -0.340 5.340 13 C -0.400 4.400 14 H 0.080 0.920 15 C -0.243 4.243 16 N -0.580 5.580 17 Si 0.800 3.200 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.200 1.200 21 C 0.021 3.979 22 C -0.079 4.079 23 C -0.074 4.074 24 C -0.146 4.146 25 C -0.160 4.160 26 C -0.153 4.153 27 C -0.126 4.126 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.023 0.977 38 H 0.102 0.898 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.025 0.975 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.104 0.896 52 H 0.099 0.901 53 H 0.104 0.896 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.633 -22.053 -7.179 31.041 hybrid contribution 1.167 0.675 1.821 2.265 sum -19.466 -21.377 -5.358 29.404 Atomic orbital electron populations 1.20615 0.87714 1.02918 1.03784 1.20712 0.97700 0.90183 1.09592 1.19129 0.77905 0.85865 0.82644 1.90801 1.62453 1.59787 1.34142 1.47958 1.48889 1.27429 1.09381 1.22073 1.03001 0.97536 0.83973 1.21593 0.88508 0.86671 1.03988 1.22392 0.93564 0.92135 0.99434 1.62037 1.02215 1.08028 1.53005 1.22625 0.89728 0.99233 0.96276 1.20597 0.94164 0.84526 0.94372 1.44337 1.08895 1.31934 1.48849 1.19454 0.91624 1.25109 1.03776 0.92048 1.25927 0.98819 1.00515 0.99058 1.70119 1.08999 1.51703 1.27186 0.85283 0.77307 0.78743 0.78714 1.20651 1.21466 1.19973 1.21127 0.84489 0.94555 0.97773 1.22578 0.98428 0.92944 0.93944 1.22675 0.95606 0.94626 0.94476 1.21364 0.93101 0.98813 1.01272 1.22367 0.99285 0.92626 1.01698 1.22505 0.92768 0.99151 1.00842 1.21534 0.99229 0.89389 1.02446 0.88715 0.89647 0.93181 0.91769 0.89458 0.88828 0.91574 0.87257 0.89211 0.97684 0.89794 0.97416 0.92395 0.97576 0.93873 0.92422 0.95650 0.97518 0.88559 0.90452 0.93743 0.91527 0.90528 0.89565 0.90128 0.89628 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 9.47 71.24 0.67 -0.59 16 2 C -0.18 -3.43 4.08 -18.70 -0.08 -3.51 16 3 C 0.55 14.98 6.41 86.57 0.55 15.54 16 4 O -0.59 -22.39 16.66 -4.09 -0.07 -22.45 16 5 N -0.61 -13.30 2.87 -851.06 -2.45 -15.74 16 6 C 0.08 0.95 9.98 127.77 1.28 2.23 16 7 C 0.12 2.98 4.74 86.38 0.41 3.39 16 8 C 0.05 1.62 5.59 86.30 0.48 2.10 16 9 N -0.53 -19.56 4.78 -895.25 -4.28 -23.83 16 10 C 0.05 2.13 5.58 86.38 0.48 2.62 16 11 C 0.19 9.78 5.36 86.35 0.46 10.24 16 12 N -0.62 -33.40 3.03 -698.10 -2.11 -35.51 16 13 C -0.27 -15.71 9.62 84.03 0.81 -14.90 16 14 H 0.06 3.51 7.85 -2.91 -0.02 3.49 16 15 C -0.05 -2.76 5.08 84.86 0.43 -2.33 16 16 N -0.93 -56.67 11.02 21.65 0.24 -56.43 16 17 Si 0.97 46.42 29.56 68.60 2.03 48.45 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 C 0.15 6.63 6.69 86.35 0.58 7.21 16 22 C 0.05 1.96 5.04 86.39 0.44 2.40 16 23 C -0.07 -1.17 5.94 -17.01 -0.10 -1.27 16 24 C -0.11 -1.93 5.90 30.52 0.18 -1.75 16 25 C -0.12 -1.52 6.88 31.71 0.22 -1.30 16 26 C -0.12 -0.93 6.94 31.91 0.22 -0.70 16 27 C -0.09 -0.84 5.72 30.85 0.18 -0.67 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.89 7.48 -2.39 -0.02 0.87 16 30 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.06 0.72 6.86 -2.38 -0.02 0.71 16 32 H 0.09 0.82 7.21 -2.39 -0.02 0.80 16 33 H 0.09 0.90 7.83 -2.39 -0.02 0.88 16 34 H 0.07 2.06 5.40 -2.39 -0.01 2.05 16 35 H 0.11 2.34 7.86 -2.39 -0.02 2.32 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 38 H 0.08 3.08 8.11 -2.39 -0.02 3.06 16 39 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 40 H 0.06 3.32 6.20 -2.39 -0.01 3.31 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 43 H 0.06 2.53 7.95 -2.39 -0.02 2.51 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 46 H 0.10 3.17 5.73 -2.39 -0.01 3.16 16 47 H 0.08 1.36 6.83 -2.39 -0.02 1.34 16 48 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 53 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 54 H 0.10 0.56 7.77 -2.39 -0.02 0.54 16 Total: -1.00 -75.94 413.52 1.43 -74.51 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.85 Total: 12.31 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 7.21 Total: 18.71 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -8.60 Total: -131.52 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.07 Total: -22.45 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -75.94 1.43 -74.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713741737.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.147 kcal (2) G-P(sol) polarization free energy of solvation -75.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds