Wall clock time and date at job start Tue Mar 31 2020 18:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 C 1.52999 * 109.47162 * 120.00040 * 2 1 3 5 5 C 1.50696 * 109.47262 * 65.00022 * 4 2 1 6 6 C 1.35455 * 126.06747 * 270.02576 * 5 4 2 7 7 N 1.35538 * 108.87160 * 179.74733 * 6 5 4 8 8 H 0.96997 * 125.67183 * 180.22991 * 7 6 5 9 9 C 1.37643 * 108.64411 * 0.37350 * 7 6 5 10 10 C 1.46674 * 126.23317 * 179.89199 * 9 7 6 11 11 O 1.21703 * 120.00105 * 179.68949 * 10 9 7 12 12 N 1.34773 * 120.00015 * 359.96296 * 10 9 7 13 13 C 1.46505 * 120.00095 * 179.72493 * 12 10 9 14 14 H 1.08994 * 109.47052 * 35.00248 * 13 12 10 15 15 C 1.52995 * 109.47024 * 155.00356 * 13 12 10 16 16 N 1.46500 * 109.47361 * 304.99744 * 15 13 12 17 17 C 1.36937 * 120.00099 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00357 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99746 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00222 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00066 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47157 * 90.00178 * 21 19 17 23 23 H 1.48504 * 109.47331 * 210.00163 * 21 19 17 24 24 H 1.48499 * 109.47127 * 330.00446 * 21 19 17 25 25 C 1.52999 * 109.47125 * 274.99839 * 13 12 10 26 26 C 1.53006 * 109.46873 * 60.00035 * 25 13 12 27 27 C 1.53003 * 109.47456 * 179.97438 * 25 13 12 28 28 C 1.52998 * 109.47629 * 300.00639 * 25 13 12 29 29 C 1.37879 * 107.53670 * 359.63007 * 9 7 6 30 30 H 1.09006 * 109.46621 * 299.99696 * 1 2 3 31 31 H 1.08994 * 109.47234 * 59.99670 * 1 2 3 32 32 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46958 * 239.99977 * 2 1 3 34 34 H 1.09004 * 109.47378 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47087 * 300.00298 * 3 2 1 36 36 H 1.09001 * 109.47144 * 60.00090 * 3 2 1 37 37 H 1.08999 * 109.47459 * 304.99579 * 4 2 1 38 38 H 1.09004 * 109.47007 * 184.99682 * 4 2 1 39 39 H 1.08000 * 125.56316 * 0.02562 * 6 5 4 40 40 H 0.97000 * 120.00112 * 359.72928 * 12 10 9 41 41 H 1.09005 * 109.47349 * 64.99828 * 15 13 12 42 42 H 1.09002 * 109.47351 * 184.99998 * 15 13 12 43 43 H 0.96998 * 119.99598 * 0.02562 * 16 15 13 44 44 H 0.97002 * 120.00657 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.47134 * 60.00047 * 26 25 13 46 46 H 1.09004 * 109.47351 * 179.97438 * 26 25 13 47 47 H 1.08998 * 109.47565 * 300.00168 * 26 25 13 48 48 H 1.08995 * 109.46462 * 60.00169 * 27 25 13 49 49 H 1.08999 * 109.47036 * 180.02562 * 27 25 13 50 50 H 1.08999 * 109.46945 * 300.01066 * 27 25 13 51 51 H 1.08995 * 109.47596 * 59.99279 * 28 25 13 52 52 H 1.09001 * 109.47408 * 179.97438 * 28 25 13 53 53 H 1.09002 * 109.46585 * 299.99677 * 28 25 13 54 54 H 1.07992 * 126.46022 * 180.25979 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1889 6 6 0.4946 -2.7063 1.6744 7 7 0.4920 -4.0391 1.4282 8 1 -0.2149 -4.6576 1.6701 9 6 1.6610 -4.3693 0.7808 10 6 2.0569 -5.7097 0.3360 11 8 3.1198 -5.8725 -0.2339 12 7 1.2411 -6.7602 0.5535 13 6 1.6338 -8.0981 0.1038 14 1 2.7129 -8.2131 0.2048 15 6 0.9264 -9.1514 0.9587 16 7 1.2119 -8.9038 2.3741 17 6 0.6816 -9.7246 3.3334 18 1 0.0533 -10.5548 3.0466 19 6 0.9526 -9.4902 4.6745 20 7 1.7187 -8.4787 5.0241 21 14 0.2299 -10.6103 5.9831 22 1 1.1662 -11.7324 6.2462 23 1 0.0185 -9.8382 7.2339 24 1 -1.0696 -11.1507 5.5094 25 6 1.2363 -8.2804 -1.3623 26 6 1.9436 -7.2269 -2.2173 27 6 1.6469 -9.6774 -1.8322 28 6 -0.2786 -8.1189 -1.5041 29 6 2.3894 -3.2095 0.6213 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6055 -0.2617 2.1370 38 1 3.1264 -0.6444 1.2951 39 1 -0.2916 -2.1579 2.1720 40 1 0.3938 -6.6304 1.0077 41 1 -0.1489 -9.0944 0.7896 42 1 1.2854 -10.1433 0.6839 43 1 1.7759 -8.1579 2.6318 44 1 1.9078 -8.3146 5.9613 45 1 3.0228 -7.3420 -2.1164 46 1 1.6608 -7.3571 -3.2619 47 1 1.6515 -6.2315 -1.8828 48 1 1.1434 -10.4281 -1.2232 49 1 1.3641 -9.8071 -2.8768 50 1 2.7262 -9.7920 -1.7312 51 1 -0.5708 -7.1236 -1.1695 52 1 -0.5616 -8.2484 -2.5487 53 1 -0.7825 -8.8694 -0.8950 54 1 3.3553 -3.1184 0.1469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725754017.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:46 Heat of formation + Delta-G solvation = -29.245100 kcal Electronic energy + Delta-G solvation = -30203.640326 eV Core-core repulsion = 26367.584619 eV Total energy + Delta-G solvation = -3836.055708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.35673 -40.93271 -38.54654 -37.17210 -36.21864 -34.68858 -33.05723 -32.26156 -30.58194 -29.31526 -28.18272 -27.94847 -27.89336 -26.99272 -25.70473 -23.96727 -22.90802 -21.27518 -21.10479 -20.34737 -19.94156 -19.44971 -18.75125 -17.25088 -17.04190 -16.72380 -16.37384 -15.88008 -15.64404 -15.46809 -15.17565 -14.91562 -14.86701 -14.68417 -14.51758 -14.38221 -14.27664 -14.04495 -13.69421 -13.52299 -13.09901 -13.05368 -12.98017 -12.95298 -12.76766 -12.70816 -12.55463 -12.39951 -12.33257 -12.19600 -12.05345 -11.78330 -11.75926 -11.66683 -11.59900 -11.39104 -11.31898 -11.09741 -10.91474 -10.00060 -9.70498 -9.01493 -9.01238 -7.95366 -5.25245 0.53839 1.46538 1.48287 1.56245 1.80163 2.13772 2.28598 2.44631 2.54516 3.38680 3.61968 3.76789 3.94527 4.03323 4.05952 4.14810 4.22282 4.23639 4.29263 4.32121 4.41454 4.43347 4.59185 4.62523 4.80170 4.81747 4.82616 4.87115 4.90189 4.93242 4.94281 5.04368 5.05561 5.08696 5.11669 5.13599 5.18660 5.19572 5.22123 5.28499 5.33071 5.39599 5.40600 5.49128 5.53736 5.55831 5.60509 5.63798 5.86560 6.01389 6.24488 6.48819 6.63418 7.21239 7.31887 8.05256 8.29175 9.27297 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.009790 B = 0.003269 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.465259 B = 8562.885210 C =10660.201145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.038 4.038 5 C -0.181 4.181 6 C 0.039 3.961 7 N -0.528 5.528 8 H 0.425 0.575 9 C -0.074 4.074 10 C 0.586 3.414 11 O -0.568 6.568 12 N -0.702 5.702 13 C 0.159 3.841 14 H 0.055 0.945 15 C 0.145 3.855 16 N -0.743 5.743 17 C -0.241 4.241 18 H 0.080 0.920 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.972 3.028 22 H -0.292 1.292 23 H -0.298 1.298 24 H -0.266 1.266 25 C -0.069 4.069 26 C -0.121 4.121 27 C -0.139 4.139 28 C -0.136 4.136 29 C -0.121 4.121 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.202 0.798 40 H 0.401 0.599 41 H 0.046 0.954 42 H 0.038 0.962 43 H 0.372 0.628 44 H 0.249 0.751 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.062 0.938 49 H 0.075 0.925 50 H 0.047 0.953 51 H 0.049 0.951 52 H 0.070 0.930 53 H 0.062 0.938 54 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 14.787 -13.345 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.075 4.075 5 C -0.187 4.187 6 C -0.098 4.098 7 N -0.123 5.123 8 H 0.264 0.736 9 C -0.187 4.187 10 C 0.375 3.625 11 O -0.448 6.448 12 N -0.351 5.351 13 C 0.054 3.946 14 H 0.073 0.927 15 C 0.018 3.982 16 N -0.386 5.386 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.219 1.219 23 H -0.224 1.224 24 H -0.191 1.191 25 C -0.071 4.071 26 C -0.178 4.178 27 C -0.197 4.197 28 C -0.193 4.193 29 C -0.149 4.149 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.219 0.781 40 H 0.236 0.764 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.204 0.796 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.089 0.911 53 H 0.081 0.919 54 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.210 14.331 -13.679 20.762 hybrid contribution -0.215 -0.743 1.441 1.635 sum -6.425 13.589 -12.238 19.383 Atomic orbital electron populations 1.21844 0.94785 1.01667 1.01872 1.21050 0.96438 0.95938 0.97437 1.21829 1.00908 0.95333 1.02155 1.20041 1.00552 0.88474 0.98482 1.19574 0.96036 0.96314 1.06811 1.22380 1.01006 0.82521 1.03853 1.41992 1.16388 1.09461 1.44481 0.73576 1.20267 0.92151 0.94330 1.11945 1.17272 0.83645 0.83357 0.78223 1.90785 1.24345 1.85255 1.44420 1.45705 1.22487 1.07333 1.59594 1.21119 0.98586 0.81070 0.93798 0.92719 1.21233 0.97934 0.95880 0.83139 1.42547 1.60141 1.34818 1.01048 1.19612 1.23174 1.07217 0.87295 0.90260 1.25538 1.01501 1.00184 0.99333 1.69839 1.43323 1.32585 1.16087 0.85167 0.78292 0.77783 0.78647 1.21948 1.22433 1.19067 1.20853 0.97050 0.96714 0.92496 1.21779 0.99519 0.97598 0.98927 1.21885 1.01102 0.94672 1.02047 1.21864 0.93279 1.01655 1.02509 1.21260 0.99825 0.90915 1.02860 0.91771 0.92974 0.93047 0.92862 0.92867 0.92481 0.91920 0.90053 0.91838 0.78134 0.76393 0.93636 0.94374 0.79598 0.94204 0.94137 0.91800 0.94290 0.91922 0.90563 0.93428 0.93180 0.91133 0.91923 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.91 71.98 0.64 -1.39 16 2 C -0.09 -1.44 2.91 -10.79 -0.03 -1.47 16 3 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 4 C -0.04 -0.67 5.18 29.85 0.15 -0.52 16 5 C -0.18 -4.17 4.82 -20.12 -0.10 -4.26 16 6 C 0.04 0.79 10.43 83.48 0.87 1.66 16 7 N -0.53 -12.47 5.99 -183.62 -1.10 -13.57 16 8 H 0.43 8.50 8.19 -92.71 -0.76 7.74 16 9 C -0.07 -2.27 7.06 40.35 0.28 -1.99 16 10 C 0.59 20.83 6.14 86.45 0.53 21.36 16 11 O -0.57 -23.59 14.00 -4.36 -0.06 -23.65 16 12 N -0.70 -22.88 3.64 -446.51 -1.62 -24.50 16 13 C 0.16 5.40 1.69 44.99 0.08 5.47 16 14 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 15 C 0.14 5.42 5.10 86.38 0.44 5.86 16 16 N -0.74 -36.27 5.43 -343.46 -1.87 -38.14 16 17 C -0.24 -12.94 9.99 84.03 0.84 -12.10 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 20 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 21 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 C -0.07 -1.86 0.62 -52.18 -0.03 -1.90 16 26 C -0.12 -3.44 6.99 71.98 0.50 -2.93 16 27 C -0.14 -3.36 8.12 71.98 0.58 -2.78 16 28 C -0.14 -3.07 7.97 71.98 0.57 -2.49 16 29 C -0.12 -3.59 10.59 22.57 0.24 -3.36 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.80 6.41 -2.39 -0.02 0.79 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.40 12.05 7.73 -92.71 -0.72 11.33 16 41 H 0.05 1.59 6.17 -2.38 -0.01 1.57 16 42 H 0.04 1.45 6.71 -2.39 -0.02 1.43 16 43 H 0.37 20.05 7.33 -92.71 -0.68 19.37 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.04 1.32 7.53 -2.39 -0.02 1.30 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.04 1.21 5.77 -2.39 -0.01 1.20 16 48 H 0.06 1.51 6.54 -2.39 -0.02 1.49 16 49 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.05 1.13 7.60 -2.39 -0.02 1.12 16 52 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 53 H 0.06 1.42 6.32 -2.39 -0.02 1.40 16 54 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -69.03 418.06 3.11 -65.92 By element: Atomic # 1 Polarization: 52.01 SS G_CDS: -1.25 Total: 50.76 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 6.71 Total: -5.70 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -4.31 Total: -134.55 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.03 3.11 -65.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725754017.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.675 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds