Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.47105 * 120.00021 * 2 1 4 4 O 1.21616 * 119.99916 * 180.02562 * 3 2 1 5 5 N 1.34770 * 120.00129 * 0.02562 * 3 2 1 6 6 C 1.46500 * 120.00160 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47248 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47098 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47206 * 179.97438 * 8 7 6 10 10 C 1.46896 * 111.00206 * 294.30834 * 9 8 7 11 11 C 1.53234 * 109.33852 * 172.74406 * 10 9 8 12 12 N 1.47076 * 108.52510 * 53.83059 * 11 10 9 13 13 C 1.36940 * 120.88713 * 128.83486 * 12 11 10 14 14 H 1.07995 * 119.99549 * 333.48747 * 13 12 11 15 15 C 1.38806 * 120.00065 * 153.48535 * 13 12 11 16 16 N 1.31622 * 119.99807 * 159.44164 * 15 13 12 17 17 Si 1.86799 * 120.00195 * 339.44322 * 15 13 12 18 18 H 1.48509 * 109.47194 * 91.97669 * 17 15 13 19 19 H 1.48500 * 109.47114 * 211.97499 * 17 15 13 20 20 H 1.48493 * 109.47177 * 331.97653 * 17 15 13 21 21 C 1.47086 * 118.23459 * 308.81211 * 12 11 10 22 22 C 1.46893 * 110.99859 * 170.00125 * 9 8 7 23 23 C 1.32998 * 120.00221 * 180.02562 * 2 1 3 24 24 C 1.51451 * 126.33627 * 359.97438 * 23 2 1 25 25 C 1.54277 * 106.84825 * 180.33667 * 24 23 2 26 26 C 1.54994 * 103.74866 * 23.12566 * 25 24 23 27 27 C 1.51841 * 126.34575 * 179.97438 * 23 2 1 28 28 H 1.09003 * 109.47323 * 269.99787 * 1 2 3 29 29 H 1.09004 * 109.47391 * 29.99822 * 1 2 3 30 30 H 1.09001 * 109.47320 * 149.99836 * 1 2 3 31 31 H 0.97006 * 119.99861 * 359.97438 * 5 3 2 32 32 H 1.08994 * 109.46734 * 299.99696 * 6 5 3 33 33 H 1.09002 * 109.47353 * 59.99368 * 6 5 3 34 34 H 1.08999 * 109.47151 * 300.00169 * 7 6 5 35 35 H 1.09001 * 109.46635 * 59.99749 * 7 6 5 36 36 H 1.08999 * 109.47621 * 300.00326 * 8 7 6 37 37 H 1.09002 * 109.47065 * 60.00027 * 8 7 6 38 38 H 1.09001 * 109.49057 * 292.70599 * 10 9 8 39 39 H 1.08999 * 109.49338 * 52.78154 * 10 9 8 40 40 H 1.08998 * 109.63213 * 294.11522 * 11 10 9 41 41 H 1.09003 * 109.62545 * 173.54081 * 11 10 9 42 42 H 0.96997 * 120.00086 * 179.97438 * 16 15 13 43 43 H 1.08994 * 109.62611 * 291.47659 * 21 12 11 44 44 H 1.08994 * 109.79031 * 170.98800 * 21 12 11 45 45 H 1.09001 * 109.49559 * 307.21088 * 22 9 8 46 46 H 1.08992 * 109.49542 * 67.29673 * 22 9 8 47 47 H 1.09001 * 109.98433 * 299.68178 * 24 23 2 48 48 H 1.08999 * 109.98739 * 60.98883 * 24 23 2 49 49 H 1.09008 * 110.57169 * 141.68580 * 25 24 23 50 50 H 1.08999 * 110.57231 * 264.55794 * 25 24 23 51 51 H 1.09002 * 110.82777 * 204.70138 * 26 25 24 52 52 H 1.08995 * 110.83171 * 81.12722 * 26 25 24 53 53 H 1.09004 * 110.43902 * 274.96600 * 27 23 2 54 54 H 1.08995 * 110.43756 * 37.36216 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2739 -0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3011 3.7098 0.0000 7 6 1.3069 4.8728 0.0001 8 6 2.0719 6.1978 0.0001 9 7 1.1173 7.3144 -0.0004 10 6 0.3465 7.3475 -1.2504 11 6 -0.7557 8.4062 -1.1390 12 7 -0.1384 9.6848 -0.7550 13 6 -0.3929 10.8290 -1.4630 14 1 -0.6707 10.7687 -2.5048 15 6 -0.2938 12.0662 -0.8415 16 7 -0.1339 13.1546 -1.5641 17 14 -0.3872 12.1865 1.0202 18 1 0.9822 12.1151 1.5903 19 1 -1.0156 13.4767 1.4020 20 1 -1.2025 11.0634 1.5485 21 6 0.7591 9.7019 0.4102 22 6 1.8017 8.5921 0.2378 23 6 2.1720 -1.1518 -0.0005 24 6 1.5641 -2.5390 -0.0006 25 6 2.7371 -3.5411 0.0074 26 6 3.9136 -2.7265 0.6028 27 6 3.6811 -1.3195 -0.0011 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.5986 2.4411 0.0005 32 1 2.9284 3.7675 0.8894 33 1 2.9272 3.7676 -0.8905 34 1 0.6799 4.8149 -0.8896 35 1 0.6806 4.8152 0.8903 36 1 2.6987 6.2555 0.8900 37 1 2.6985 6.2556 -0.8899 38 1 1.0087 7.5975 -2.0794 39 1 -0.1038 6.3706 -1.4261 40 1 -1.4772 8.1052 -0.3795 41 1 -1.2566 8.5158 -2.1009 42 1 -0.0650 14.0193 -1.1299 43 1 0.1832 9.5254 1.3186 44 1 1.2599 10.6677 0.4761 45 1 2.4066 8.5179 1.1415 46 1 2.4436 8.8248 -0.6118 47 1 0.9504 -2.6768 0.8896 48 1 0.9592 -2.6806 -0.8962 49 1 2.5050 -4.3974 0.6408 50 1 2.9705 -3.8657 -1.0066 51 1 4.8709 -3.1344 0.2784 52 1 3.8526 -2.6960 1.6907 53 1 4.0688 -1.2735 -1.0189 54 1 4.1493 -0.5549 0.6187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731359286.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = -27.515841 kcal Electronic energy + Delta-G solvation = -28628.448630 eV Core-core repulsion = 24792.467908 eV Total energy + Delta-G solvation = -3835.980721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.05745 -39.97517 -38.84677 -37.12867 -35.87805 -34.55640 -33.73937 -32.27166 -31.81270 -29.83573 -28.86643 -28.26565 -26.25635 -25.21109 -24.71931 -23.82365 -22.36874 -21.88351 -21.50346 -20.97644 -19.30155 -18.81245 -17.51207 -17.40697 -17.06434 -16.93490 -16.57831 -16.11356 -15.98204 -15.86209 -15.51305 -15.50633 -15.19880 -14.75826 -14.57393 -14.39085 -14.13378 -13.99802 -13.94464 -13.57263 -13.34089 -13.17967 -13.11033 -13.04345 -12.95133 -12.67927 -12.51057 -12.27089 -12.21185 -12.16328 -11.94886 -11.89692 -11.78902 -11.62793 -11.58842 -11.48717 -11.37752 -10.74060 -10.64316 -10.18492 -9.65848 -9.37792 -8.90197 -8.17663 -5.49111 0.39529 1.29710 1.41574 1.51457 2.17766 2.26741 2.41143 2.89545 3.06903 3.36323 3.47793 3.75585 3.92022 3.92481 4.02641 4.13871 4.14499 4.16259 4.22026 4.24456 4.34185 4.39876 4.49095 4.49629 4.55560 4.59701 4.62765 4.69648 4.73241 4.77374 4.81738 4.82915 4.84263 4.91189 4.94171 4.98147 5.01767 5.04776 5.11971 5.16290 5.18297 5.22415 5.25256 5.30632 5.41020 5.47002 5.51272 5.69693 5.81879 6.07453 6.10216 6.21527 6.58930 6.89067 7.26210 7.60374 8.02978 9.02194 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.036461 B = 0.001648 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.752820 B =16985.695020 C =17238.460944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.204 4.204 3 C 0.545 3.455 4 O -0.584 6.584 5 N -0.716 5.716 6 C 0.128 3.872 7 C -0.112 4.112 8 C 0.059 3.941 9 N -0.536 5.536 10 C 0.049 3.951 11 C 0.145 3.855 12 N -0.624 5.624 13 C -0.250 4.250 14 H 0.052 0.948 15 C -0.036 4.036 16 N -0.958 5.958 17 Si 0.950 3.050 18 H -0.273 1.273 19 H -0.310 1.310 20 H -0.263 1.263 21 C 0.125 3.875 22 C 0.052 3.948 23 C -0.040 4.040 24 C -0.096 4.096 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.106 4.106 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.414 0.586 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.017 0.983 39 H 0.105 0.895 40 H 0.039 0.961 41 H 0.060 0.940 42 H 0.262 0.738 43 H 0.036 0.964 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.021 0.979 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.068 0.932 53 H 0.072 0.928 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -36.372 5.959 36.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.207 4.207 3 C 0.335 3.665 4 O -0.466 6.466 5 N -0.369 5.369 6 C 0.003 3.997 7 C -0.150 4.150 8 C -0.070 4.070 9 N -0.261 5.261 10 C -0.080 4.080 11 C 0.020 3.980 12 N -0.349 5.349 13 C -0.380 4.380 14 H 0.070 0.930 15 C -0.231 4.231 16 N -0.604 5.604 17 Si 0.779 3.221 18 H -0.199 1.199 19 H -0.239 1.239 20 H -0.188 1.188 21 C -0.001 4.001 22 C -0.077 4.077 23 C -0.042 4.042 24 C -0.132 4.132 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.143 4.143 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.252 0.748 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.035 0.965 39 H 0.123 0.877 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.040 0.960 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.169 -36.261 6.324 36.945 hybrid contribution 0.358 1.376 -0.221 1.439 sum 3.527 -34.885 6.102 35.590 Atomic orbital electron populations 1.20753 0.88273 1.04006 1.03357 1.20889 0.97610 0.90650 1.11578 1.18815 0.86937 0.85163 0.75557 1.90733 1.15422 1.88200 1.52241 1.45858 1.11181 1.05060 1.74757 1.21170 0.94704 0.82230 1.01573 1.21631 0.97857 0.91283 1.04193 1.22022 0.93687 0.89960 1.01284 1.61901 1.26147 1.02897 1.35166 1.22562 0.95847 1.00075 0.89483 1.21205 0.93939 0.84118 0.98697 1.44557 1.51579 1.05609 1.33183 1.18884 1.41953 0.84393 0.92750 0.93035 1.25891 1.00366 0.94823 1.01994 1.69969 1.54459 0.98916 1.37046 0.85877 0.78161 0.75892 0.82212 1.19934 1.23913 1.18766 1.21451 0.91705 0.97126 0.89775 1.22439 0.95286 0.89495 1.00505 1.23045 0.96390 0.94863 0.89934 1.21370 0.98633 0.89322 1.03907 1.22414 0.93921 0.97728 1.01899 1.22582 0.99510 0.93896 1.00319 1.21666 0.92972 0.98189 1.01460 0.90131 0.90882 0.89826 0.74828 0.92113 0.92651 0.90349 0.89625 0.89854 0.95171 0.96466 0.87702 0.94280 0.92155 0.92950 0.94568 0.92989 0.88856 0.96047 0.88696 0.88670 0.89587 0.90824 0.90576 0.91296 0.90959 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.35 71.23 0.67 -0.22 16 2 C -0.20 -3.20 6.00 -18.70 -0.11 -3.31 16 3 C 0.54 11.70 7.75 86.57 0.67 12.37 16 4 O -0.58 -17.00 13.75 -4.08 -0.06 -17.06 16 5 N -0.72 -11.96 5.50 -466.71 -2.57 -14.52 16 6 C 0.13 2.33 5.67 86.38 0.49 2.82 16 7 C -0.11 -1.88 5.26 30.59 0.16 -1.72 16 8 C 0.06 1.30 4.96 86.30 0.43 1.73 16 9 N -0.54 -15.71 4.63 -895.29 -4.14 -19.85 16 10 C 0.05 1.50 5.46 86.38 0.47 1.97 16 11 C 0.15 5.56 6.69 86.35 0.58 6.13 16 12 N -0.62 -29.84 2.82 -698.14 -1.97 -31.81 16 13 C -0.25 -14.43 10.08 84.03 0.85 -13.58 16 14 H 0.05 3.24 8.05 -2.91 -0.02 3.21 16 15 C -0.04 -2.14 5.24 84.86 0.44 -1.69 16 16 N -0.96 -60.83 13.97 21.65 0.30 -60.53 16 17 Si 0.95 47.16 24.31 68.60 1.67 48.83 16 18 H -0.27 -12.71 6.58 99.48 0.65 -12.06 16 19 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 20 H -0.26 -12.62 6.61 99.48 0.66 -11.96 16 21 C 0.12 5.36 4.35 86.35 0.38 5.73 16 22 C 0.05 1.79 5.62 86.39 0.49 2.28 16 23 C -0.04 -0.61 6.12 -17.01 -0.10 -0.71 16 24 C -0.10 -0.80 5.53 30.52 0.17 -0.64 16 25 C -0.12 -0.96 6.87 31.71 0.22 -0.74 16 26 C -0.13 -1.47 6.95 31.91 0.22 -1.25 16 27 C -0.11 -1.88 5.42 30.85 0.17 -1.71 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.48 6.70 -2.38 -0.02 0.46 16 30 H 0.08 0.48 7.15 -2.39 -0.02 0.46 16 31 H 0.41 4.61 6.57 -92.70 -0.61 4.00 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.24 6.40 -2.39 -0.02 1.22 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.71 7.97 -2.39 -0.02 1.69 16 37 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 38 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.10 2.43 6.16 -2.39 -0.01 2.42 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 2.31 7.95 -2.39 -0.02 2.29 16 42 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.04 1.54 6.94 -2.39 -0.02 1.52 16 44 H 0.05 2.46 4.61 -2.39 -0.01 2.44 16 45 H 0.09 2.68 7.99 -2.39 -0.02 2.66 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.10 0.58 7.89 -2.39 -0.02 0.56 16 49 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 50 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 53 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 54 H 0.07 1.62 6.26 -2.39 -0.01 1.61 16 Total: -1.00 -74.39 405.53 -0.43 -74.82 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.16 Total: 12.67 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 6.18 Total: 7.45 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -8.38 Total: -126.71 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.06 Total: -17.06 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.67 Total: 48.83 kcal Total: -74.39 -0.43 -74.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731359286.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.304 kcal (2) G-P(sol) polarization free energy of solvation -74.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds