Wall clock time and date at job start Tue Mar 31 2020 19:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48501 * 109.47202 * 270.00255 * 3 2 1 5 5 H 1.48493 * 109.46897 * 30.00160 * 3 2 1 6 6 H 1.48503 * 109.47357 * 150.00349 * 3 2 1 7 7 C 1.37882 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99915 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00100 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47066 * 175.10959 * 9 7 2 11 11 C 1.46904 * 110.99896 * 295.16857 * 10 9 7 12 12 C 1.53245 * 109.33919 * 187.25664 * 11 10 9 13 13 N 1.47079 * 108.51905 * 306.16698 * 12 11 10 14 14 C 1.34781 * 120.88490 * 231.18670 * 13 12 11 15 15 O 1.21566 * 119.99424 * 5.88109 * 14 13 12 16 16 C 1.47709 * 119.99999 * 185.88214 * 14 13 12 17 17 C 1.39329 * 120.11149 * 53.46482 * 16 14 13 18 18 C 1.39107 * 119.75702 * 179.97438 * 17 16 14 19 Xx 1.57000 * 120.00838 * 179.97438 * 18 17 16 20 19 O 1.41994 * 120.00580 * 359.97438 * 19 18 17 21 20 O 1.42009 * 119.99357 * 179.97438 * 19 18 17 22 21 C 1.39657 * 119.97289 * 0.25121 * 18 17 16 23 22 C 1.37846 * 120.21704 * 359.51295 * 22 18 17 24 23 C 1.38531 * 120.24688 * 0.46382 * 23 22 18 25 24 F 1.35102 * 119.98912 * 179.76424 * 24 23 22 26 25 C 1.47082 * 118.23647 * 51.46357 * 13 12 11 27 26 C 1.46903 * 111.00208 * 59.47049 * 10 9 7 28 27 H 0.97001 * 119.99093 * 359.97438 * 1 2 3 29 28 H 1.09001 * 109.47107 * 55.10825 * 9 7 2 30 29 H 1.08997 * 109.46905 * 295.10754 * 9 7 2 31 30 H 1.08998 * 109.49486 * 67.29847 * 11 10 9 32 31 H 1.08997 * 109.51618 * 307.22665 * 11 10 9 33 32 H 1.08999 * 109.62662 * 186.46146 * 12 11 10 34 33 H 1.08999 * 109.63210 * 65.87561 * 12 11 10 35 34 H 1.08000 * 120.11514 * 359.95015 * 17 16 14 36 35 H 0.96703 * 113.99759 * 359.97438 * 20 19 18 37 36 H 0.96706 * 113.99348 * 180.02562 * 21 19 18 38 37 H 1.08002 * 119.88884 * 179.75059 * 22 18 17 39 38 H 1.08001 * 119.88112 * 180.21610 * 23 22 18 40 39 H 1.08998 * 109.62978 * 68.24890 * 26 13 12 41 40 H 1.09000 * 109.62987 * 188.83130 * 26 13 12 42 41 H 1.08997 * 109.49086 * 292.70345 * 27 10 9 43 42 H 1.08997 * 109.48980 * 52.78539 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 7 4.0012 -2.5741 0.1164 11 6 3.6272 -3.1568 1.4121 12 6 4.3062 -4.5215 1.5697 13 7 3.9747 -5.3463 0.3980 14 6 3.4830 -6.5925 0.5459 15 8 3.2076 -7.0096 1.6540 16 6 3.2790 -7.4514 -0.6384 17 6 4.3277 -7.6766 -1.5276 18 6 4.1275 -8.4871 -2.6403 19 8 6.5744 -8.1493 -3.4210 20 8 5.1004 -9.5723 -4.7819 21 6 2.8771 -9.0671 -2.8651 22 6 1.8416 -8.8475 -1.9821 23 6 2.0311 -8.0423 -0.8708 24 9 1.0113 -7.8267 -0.0113 25 6 4.1997 -4.7775 -0.9396 26 6 3.5194 -3.4005 -0.9984 27 1 -0.4849 0.8401 0.0004 28 1 3.8753 -0.6065 0.8418 29 1 3.8745 -0.7579 -0.9317 30 1 2.5453 -3.2816 1.4561 31 1 3.9501 -2.4950 2.2158 32 1 3.9434 -5.0086 2.4748 33 1 5.3864 -4.3884 1.6299 34 1 5.2924 -7.2232 -1.3537 35 1 6.6168 -7.6032 -2.6241 36 1 5.8824 -9.6718 -5.3421 37 1 2.7220 -9.6929 -3.7315 38 1 0.8779 -9.3015 -2.1593 39 1 5.2698 -4.6685 -1.1159 40 1 3.7664 -5.4338 -1.6943 41 1 2.4390 -3.5219 -0.9208 42 1 3.7644 -2.9152 -1.9432 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827478456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:49 Heat of formation + Delta-G solvation = 65.666785 kcal Electronic energy + Delta-G solvation = -27726.976120 eV Core-core repulsion = 23516.761345 eV Total energy + Delta-G solvation = -4210.214774 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.140 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -48.66775 -40.48197 -38.80859 -37.65537 -36.21292 -34.72122 -32.01579 -30.90273 -30.43204 -29.63484 -28.90822 -28.70963 -27.25338 -24.45034 -24.00053 -23.06835 -21.99758 -21.15147 -19.89504 -18.83348 -17.58963 -17.21808 -16.79222 -16.32522 -15.95686 -15.68946 -15.57922 -15.33488 -15.08895 -14.47807 -14.39547 -14.22732 -13.78118 -13.68546 -13.55138 -13.44826 -12.92255 -12.77116 -12.64583 -12.48434 -12.09605 -11.92505 -11.71612 -11.69084 -11.54083 -11.35744 -11.33508 -11.27169 -11.11983 -11.00958 -9.89352 -9.34283 -9.03348 -8.88994 -8.56453 -8.28496 -7.42514 -7.11159 -6.89137 -5.86138 -4.17753 0.09508 1.09708 1.50659 1.61724 1.64384 1.87532 2.33780 2.45435 2.70114 2.87796 3.48519 3.93140 4.15837 4.34706 4.40502 4.61788 4.67086 4.80607 4.87241 4.97846 5.05069 5.09597 5.21786 5.23214 5.30438 5.38746 5.51342 5.52332 5.56021 5.62149 5.71170 5.81198 5.88320 5.92183 5.96361 6.21496 6.36957 6.41367 6.56973 6.61968 6.90786 7.11390 7.28716 7.51502 8.11153 9.67499 10.17080 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.003280 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.029088 B = 8535.144795 C = 8931.648080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.063 4.063 3 Si 0.937 3.063 4 H -0.241 1.241 5 H -0.252 1.252 6 H -0.233 1.233 7 C -0.130 4.130 8 H 0.132 0.868 9 C 0.068 3.932 10 N -0.528 5.528 11 C 0.037 3.963 12 C 0.117 3.883 13 N -0.609 5.609 14 C 0.577 3.423 15 O -0.528 6.528 16 C -0.161 4.161 17 C -0.083 4.083 18 C 0.162 3.838 19 O -0.815 6.815 20 O -0.850 6.850 21 C -0.074 4.074 22 C -0.143 4.143 23 C 0.107 3.893 24 F -0.132 7.132 25 C 0.106 3.894 26 C 0.036 3.964 27 H 0.332 0.668 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.251 0.749 36 H 0.277 0.723 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.747 21.748 12.079 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.255 5.255 2 C -0.276 4.276 3 Si 0.754 3.246 4 H -0.164 1.164 5 H -0.175 1.175 6 H -0.156 1.156 7 C -0.150 4.150 8 H 0.149 0.851 9 C -0.059 4.059 10 N -0.252 5.252 11 C -0.091 4.091 12 C -0.005 4.005 13 N -0.342 5.342 14 C 0.365 3.635 15 O -0.404 6.404 16 C -0.165 4.165 17 C -0.101 4.101 18 C 0.139 3.861 19 O -0.629 6.629 20 O -0.667 6.667 21 C -0.092 4.092 22 C -0.162 4.162 23 C 0.087 3.913 24 F -0.111 7.111 25 C -0.017 4.017 26 C -0.093 4.093 27 H 0.146 0.854 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.168 0.832 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.019 21.146 12.380 26.111 hybrid contribution -0.343 0.796 -0.024 0.867 sum -9.362 21.942 12.356 26.866 Atomic orbital electron populations 1.69918 1.08441 1.35991 1.11179 1.26702 0.96525 1.05335 0.99016 0.85579 0.80801 0.75696 0.82526 1.16412 1.17492 1.15589 1.26156 0.97108 0.98258 0.93522 0.85079 1.21726 0.89205 0.91694 1.03267 1.62244 1.58851 1.01291 1.02769 1.22586 0.98910 0.96060 0.91551 1.21709 1.00413 0.89164 0.89242 1.48026 1.64272 1.14135 1.07812 1.18036 0.76324 0.80962 0.88192 1.90777 1.50402 1.73226 1.26042 1.19802 0.94135 1.04507 0.98076 1.21645 0.98776 0.98514 0.91212 1.31245 0.82723 0.88486 0.83677 1.94359 1.58529 1.70486 1.39483 1.93454 1.36045 1.83751 1.53415 1.21310 0.89366 0.98909 0.99627 1.20997 1.00281 1.00971 0.93907 1.17591 0.84027 0.99578 0.90074 1.91503 1.57484 1.93365 1.68707 1.22152 1.02197 0.93456 0.83906 1.22703 0.98084 0.93755 0.94733 0.85427 0.87464 0.87348 0.93617 0.89201 0.88427 0.90264 0.83162 0.92197 0.89396 0.82777 0.83446 0.89470 0.88351 0.93475 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 -5.69 13.96 55.43 0.77 -4.92 16 2 C -0.06 -0.48 5.47 -17.82 -0.10 -0.58 16 3 Si 0.94 5.35 27.57 -169.99 -4.69 0.67 16 4 H -0.24 -1.54 7.11 56.52 0.40 -1.14 16 5 H -0.25 -1.61 7.11 56.52 0.40 -1.21 16 6 H -0.23 -1.18 6.40 56.52 0.36 -0.82 16 7 C -0.13 -1.01 8.32 -34.44 -0.29 -1.29 16 8 H 0.13 1.24 6.12 -52.49 -0.32 0.92 16 9 C 0.07 0.44 4.20 -4.98 -0.02 0.42 16 10 N -0.53 -4.45 4.83 -235.46 -1.14 -5.59 16 11 C 0.04 0.32 5.25 -3.70 -0.02 0.30 16 12 C 0.12 1.27 6.61 -3.60 -0.02 1.25 16 13 N -0.61 -8.21 3.00 -173.34 -0.52 -8.73 16 14 C 0.58 9.85 6.90 -12.39 -0.09 9.76 16 15 O -0.53 -10.39 16.28 5.31 0.09 -10.30 16 16 C -0.16 -2.88 4.62 -104.96 -0.48 -3.37 16 17 C -0.08 -1.64 7.39 -38.85 -0.29 -1.93 16 18 C 0.16 3.94 9.79 -38.73 -0.38 3.56 16 19 O -0.81 -28.62 17.83 -57.73 -1.03 -29.65 16 20 O -0.85 -30.98 17.23 -57.73 -0.99 -31.98 16 21 C -0.07 -1.51 9.74 -39.20 -0.38 -1.89 16 22 C -0.14 -2.36 10.00 -39.62 -0.40 -2.76 16 23 C 0.11 1.88 7.28 -38.81 -0.28 1.60 16 24 F -0.13 -2.32 16.63 2.25 0.04 -2.28 16 25 C 0.11 1.27 5.68 -3.36 -0.02 1.25 16 26 C 0.04 0.34 5.17 -3.46 -0.02 0.32 16 27 H 0.33 2.43 8.31 -40.82 -0.34 2.09 16 28 H 0.11 0.55 6.78 -51.93 -0.35 0.20 16 29 H 0.11 0.56 7.81 -51.93 -0.41 0.16 16 30 H 0.05 0.44 7.11 -51.93 -0.37 0.08 16 31 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 32 H 0.10 1.15 7.04 -51.93 -0.37 0.78 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.15 2.89 6.14 -52.49 -0.32 2.56 16 35 H 0.25 7.48 7.10 45.56 0.32 7.81 16 36 H 0.28 9.98 9.20 45.56 0.42 10.40 16 37 H 0.15 3.26 7.76 -52.49 -0.41 2.85 16 38 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 1.32 5.53 -51.93 -0.29 1.03 16 41 H 0.05 0.48 6.62 -51.93 -0.34 0.14 16 42 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -43.34 360.41 -8.53 -51.88 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -3.71 Total: 28.84 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.78 Total: 6.64 kcal Atomic # 7 Polarization: -18.35 SS G_CDS: -0.88 Total: -19.24 kcal Atomic # 8 Polarization: -69.99 SS G_CDS: -1.94 Total: -71.93 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 5.35 SS G_CDS: -4.69 Total: 0.67 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -43.34 -8.53 -51.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827478456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.546 kcal (2) G-P(sol) polarization free energy of solvation -43.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds