Wall clock time and date at job start Tue Mar 31 2020 19:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48501 * 109.47202 * 270.00255 * 3 2 1 5 5 H 1.48493 * 109.46897 * 30.00160 * 3 2 1 6 6 H 1.48503 * 109.47357 * 150.00349 * 3 2 1 7 7 C 1.37882 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99915 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00100 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47066 * 175.10959 * 9 7 2 11 11 C 1.46904 * 110.99896 * 295.16857 * 10 9 7 12 12 C 1.53245 * 109.33919 * 187.25664 * 11 10 9 13 13 N 1.47079 * 108.51905 * 306.16698 * 12 11 10 14 14 C 1.34781 * 120.88490 * 231.18670 * 13 12 11 15 15 O 1.21566 * 119.99424 * 5.88109 * 14 13 12 16 16 C 1.47709 * 119.99999 * 185.88214 * 14 13 12 17 17 C 1.39329 * 120.11149 * 53.46482 * 16 14 13 18 18 C 1.39107 * 119.75702 * 179.97438 * 17 16 14 19 Xx 1.57000 * 120.00838 * 179.97438 * 18 17 16 20 19 O 1.41994 * 120.00580 * 359.97438 * 19 18 17 21 20 O 1.42009 * 119.99357 * 179.97438 * 19 18 17 22 21 C 1.39657 * 119.97289 * 0.25121 * 18 17 16 23 22 C 1.37846 * 120.21704 * 359.51295 * 22 18 17 24 23 C 1.38531 * 120.24688 * 0.46382 * 23 22 18 25 24 F 1.35102 * 119.98912 * 179.76424 * 24 23 22 26 25 C 1.47082 * 118.23647 * 51.46357 * 13 12 11 27 26 C 1.46903 * 111.00208 * 59.47049 * 10 9 7 28 27 H 0.97001 * 119.99093 * 359.97438 * 1 2 3 29 28 H 1.09001 * 109.47107 * 55.10825 * 9 7 2 30 29 H 1.08997 * 109.46905 * 295.10754 * 9 7 2 31 30 H 1.08998 * 109.49486 * 67.29847 * 11 10 9 32 31 H 1.08997 * 109.51618 * 307.22665 * 11 10 9 33 32 H 1.08999 * 109.62662 * 186.46146 * 12 11 10 34 33 H 1.08999 * 109.63210 * 65.87561 * 12 11 10 35 34 H 1.08000 * 120.11514 * 359.95015 * 17 16 14 36 35 H 0.96703 * 113.99759 * 359.97438 * 20 19 18 37 36 H 0.96706 * 113.99348 * 180.02562 * 21 19 18 38 37 H 1.08002 * 119.88884 * 179.75059 * 22 18 17 39 38 H 1.08001 * 119.88112 * 180.21610 * 23 22 18 40 39 H 1.08998 * 109.62978 * 68.24890 * 26 13 12 41 40 H 1.09000 * 109.62987 * 188.83130 * 26 13 12 42 41 H 1.08997 * 109.49086 * 292.70345 * 27 10 9 43 42 H 1.08997 * 109.48980 * 52.78539 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 7 4.0012 -2.5741 0.1164 11 6 3.6272 -3.1568 1.4121 12 6 4.3062 -4.5215 1.5697 13 7 3.9747 -5.3463 0.3980 14 6 3.4830 -6.5925 0.5459 15 8 3.2076 -7.0096 1.6540 16 6 3.2790 -7.4514 -0.6384 17 6 4.3277 -7.6766 -1.5276 18 6 4.1275 -8.4871 -2.6403 19 8 6.5744 -8.1493 -3.4210 20 8 5.1004 -9.5723 -4.7819 21 6 2.8771 -9.0671 -2.8651 22 6 1.8416 -8.8475 -1.9821 23 6 2.0311 -8.0423 -0.8708 24 9 1.0113 -7.8267 -0.0113 25 6 4.1997 -4.7775 -0.9396 26 6 3.5194 -3.4005 -0.9984 27 1 -0.4849 0.8401 0.0004 28 1 3.8753 -0.6065 0.8418 29 1 3.8745 -0.7579 -0.9317 30 1 2.5453 -3.2816 1.4561 31 1 3.9501 -2.4950 2.2158 32 1 3.9434 -5.0086 2.4748 33 1 5.3864 -4.3884 1.6299 34 1 5.2924 -7.2232 -1.3537 35 1 6.6168 -7.6032 -2.6241 36 1 5.8824 -9.6718 -5.3421 37 1 2.7220 -9.6929 -3.7315 38 1 0.8779 -9.3015 -2.1593 39 1 5.2698 -4.6685 -1.1159 40 1 3.7664 -5.4338 -1.6943 41 1 2.4390 -3.5219 -0.9208 42 1 3.7644 -2.9152 -1.9432 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827478456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:48 Heat of formation + Delta-G solvation = 22.436295 kcal Electronic energy + Delta-G solvation = -27728.850734 eV Core-core repulsion = 23516.761345 eV Total energy + Delta-G solvation = -4212.089389 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.33326 -41.81230 -40.10977 -39.26061 -37.01529 -35.64214 -33.47720 -32.06974 -31.83180 -31.29682 -31.11181 -30.77938 -28.18502 -25.72454 -24.91579 -24.29071 -23.67860 -22.23413 -20.82748 -19.86621 -18.96308 -18.59780 -17.94045 -17.68949 -17.39700 -16.87941 -16.36078 -16.29770 -16.25100 -15.71391 -15.50451 -15.23012 -15.10842 -14.92517 -14.71197 -14.45728 -14.31052 -14.02705 -13.97499 -13.67959 -13.51632 -13.31600 -13.16917 -12.92105 -12.74212 -12.39646 -12.29113 -12.13066 -11.97939 -11.65035 -11.38445 -10.71184 -10.37376 -10.01269 -9.90947 -9.69201 -9.40346 -9.38941 -9.18230 -8.56757 -4.76453 -2.07689 -0.79523 -0.51555 1.15036 1.17055 1.19310 1.47830 1.60170 1.89336 1.91098 1.97317 2.56273 2.75652 2.90918 3.13757 3.31794 3.45111 3.58905 3.78073 3.89815 3.93935 4.08085 4.19551 4.24751 4.27178 4.31709 4.38704 4.48332 4.49749 4.58207 4.66864 4.73930 4.80842 4.84784 4.96665 4.97776 5.05696 5.08742 5.23187 5.29112 5.87699 5.90528 6.07672 6.72934 6.99089 7.50663 7.81073 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.003280 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.029088 B = 8535.144795 C = 8931.648080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.646 5.646 2 C -0.072 4.072 3 Si 0.978 3.022 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.213 1.213 7 C -0.128 4.128 8 H 0.113 0.887 9 C 0.068 3.932 10 N -0.530 5.530 11 C 0.043 3.957 12 C 0.112 3.888 13 N -0.596 5.596 14 C 0.574 3.426 15 O -0.547 6.547 16 C -0.137 4.137 17 C -0.058 4.058 18 C 0.246 3.754 19 O -0.969 6.969 20 O -1.059 7.059 21 C -0.062 4.062 22 C -0.083 4.083 23 C 0.151 3.849 24 F -0.108 7.108 25 C 0.097 3.903 26 C 0.041 3.959 27 H 0.338 0.662 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.038 0.962 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.169 0.831 35 H 0.244 0.756 36 H 0.235 0.765 37 H 0.164 0.836 38 H 0.223 0.777 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 24.931 17.534 33.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.294 5.294 2 C -0.283 4.283 3 Si 0.794 3.206 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.135 1.135 7 C -0.148 4.148 8 H 0.131 0.869 9 C -0.058 4.058 10 N -0.253 5.253 11 C -0.085 4.085 12 C -0.009 4.009 13 N -0.328 5.328 14 C 0.361 3.639 15 O -0.426 6.426 16 C -0.141 4.141 17 C -0.076 4.076 18 C 0.231 3.769 19 O -0.785 6.785 20 O -0.879 6.879 21 C -0.080 4.080 22 C -0.101 4.101 23 C 0.130 3.870 24 F -0.086 7.086 25 C -0.025 4.025 26 C -0.087 4.087 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.056 0.944 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.186 0.814 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.182 0.818 38 H 0.239 0.761 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.083 24.386 17.917 33.378 hybrid contribution 0.392 0.152 -0.862 0.959 sum -13.692 24.538 17.056 32.871 Atomic orbital electron populations 1.69928 1.09668 1.36961 1.12853 1.27141 0.96412 1.06732 0.98017 0.85013 0.80679 0.73208 0.81737 1.17558 1.18957 1.13461 1.26156 0.97747 0.97506 0.93404 0.86924 1.21926 0.88162 0.90637 1.05103 1.62243 1.58858 1.02032 1.02197 1.22578 0.98152 0.95228 0.92577 1.21983 1.01562 0.89766 0.87608 1.48157 1.61982 1.13176 1.09514 1.17681 0.77457 0.81891 0.86884 1.90811 1.51914 1.73880 1.25988 1.19710 0.92655 1.04602 0.97154 1.21439 1.01190 0.96228 0.88746 1.28584 0.70596 0.99125 0.78611 1.94579 1.73471 1.70780 1.39631 1.93354 1.38015 1.92961 1.63614 1.21513 0.86959 0.98176 1.01369 1.21299 0.99969 0.98585 0.90198 1.17772 0.83547 0.96404 0.89248 1.91612 1.56336 1.92723 1.67903 1.22311 1.02848 0.94838 0.82538 1.22628 0.97501 0.92469 0.96145 0.84764 0.85124 0.85480 0.94418 0.86390 0.88939 0.88902 0.81416 0.92922 0.93929 0.81849 0.76069 0.89056 0.89842 0.93722 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -10.87 13.96 21.45 0.30 -10.57 16 2 C -0.07 -0.90 5.47 84.66 0.46 -0.43 16 3 Si 0.98 7.79 27.57 68.60 1.89 9.68 16 4 H -0.25 -2.48 7.11 99.48 0.71 -1.77 16 5 H -0.27 -2.72 7.11 99.48 0.71 -2.01 16 6 H -0.21 -1.01 6.40 99.48 0.64 -0.38 16 7 C -0.13 -1.50 8.32 25.60 0.21 -1.29 16 8 H 0.11 1.77 6.12 -2.91 -0.02 1.75 16 9 C 0.07 0.54 4.20 85.56 0.36 0.90 16 10 N -0.53 -6.36 4.83 -898.87 -4.34 -10.70 16 11 C 0.04 0.52 5.25 86.38 0.45 0.98 16 12 C 0.11 1.90 6.61 86.35 0.57 2.47 16 13 N -0.60 -13.23 3.00 -820.58 -2.46 -15.69 16 14 C 0.57 16.23 6.90 86.75 0.60 16.83 16 15 O -0.55 -18.23 16.28 -3.92 -0.06 -18.29 16 16 C -0.14 -4.00 4.62 -20.08 -0.09 -4.09 16 17 C -0.06 -2.10 7.39 22.74 0.17 -1.93 16 18 C 0.25 11.77 9.79 22.82 0.22 11.99 16 19 O -0.97 -78.27 17.83 -127.47 -2.27 -80.54 16 20 O -1.06 -91.02 17.23 -127.47 -2.20 -93.22 16 21 C -0.06 -2.25 9.74 22.52 0.22 -2.03 16 22 C -0.08 -1.92 10.00 22.25 0.22 -1.69 16 23 C 0.15 3.84 7.28 22.77 0.17 4.00 16 24 F -0.11 -2.66 16.63 44.97 0.75 -1.92 16 25 C 0.10 1.95 5.68 86.50 0.49 2.45 16 26 C 0.04 0.61 5.17 86.54 0.45 1.06 16 27 H 0.34 4.49 8.31 -92.71 -0.77 3.72 16 28 H 0.13 0.54 6.78 -2.39 -0.02 0.52 16 29 H 0.13 0.65 7.81 -2.39 -0.02 0.63 16 30 H 0.04 0.55 7.11 -2.39 -0.02 0.53 16 31 H 0.12 0.86 8.06 -2.39 -0.02 0.84 16 32 H 0.09 1.74 7.04 -2.39 -0.02 1.73 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.17 6.17 6.14 -2.91 -0.02 6.16 16 35 H 0.24 16.52 7.10 -74.06 -0.53 15.99 16 36 H 0.23 21.00 9.20 -74.05 -0.68 20.32 16 37 H 0.16 6.48 7.76 -2.91 -0.02 6.45 16 38 H 0.22 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 1.89 5.53 -2.39 -0.01 1.88 16 41 H 0.04 0.71 6.62 -2.39 -0.02 0.69 16 42 H 0.11 1.35 8.11 -2.39 -0.02 1.33 16 Total: -1.00 -123.55 360.41 -4.08 -127.63 By element: Atomic # 1 Polarization: 64.60 SS G_CDS: -0.18 Total: 64.42 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: 4.50 Total: 29.21 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: -6.50 Total: -36.97 kcal Atomic # 8 Polarization: -187.52 SS G_CDS: -4.53 Total: -192.05 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.75 Total: -1.92 kcal Atomic # 14 Polarization: 7.79 SS G_CDS: 1.89 Total: 9.68 kcal Total: -123.55 -4.08 -127.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827478456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.063 kcal (2) G-P(sol) polarization free energy of solvation -123.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -127.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds