Wall clock time and date at job start Tue Mar 31 2020 19:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38355 * 119.92072 * 2 1 4 4 C 1.38553 * 120.21757 * 179.97438 * 3 2 1 5 5 F 1.35101 * 119.96918 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.07223 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.07823 * 179.97438 * 6 4 3 8 8 N 1.46897 * 109.46949 * 97.09878 * 7 6 4 9 9 C 1.46955 * 110.99510 * 293.79582 * 8 7 6 10 10 C 1.53058 * 109.36110 * 176.81580 * 9 8 7 11 11 N 1.46950 * 109.36584 * 58.40280 * 10 9 8 12 12 C 1.46906 * 111.00059 * 176.81096 * 11 10 9 13 13 C 1.50703 * 109.46849 * 59.38108 * 12 11 10 14 14 H 1.07997 * 119.99898 * 4.89825 * 13 12 11 15 15 C 1.37877 * 119.99891 * 184.88697 * 13 12 11 16 16 N 1.31515 * 119.99723 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00029 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46948 * 90.00296 * 17 15 13 19 19 H 1.48501 * 109.47029 * 209.99994 * 17 15 13 20 20 H 1.48498 * 109.47084 * 330.00362 * 17 15 13 21 21 C 1.46957 * 110.88073 * 300.68001 * 11 10 9 22 22 C 1.46959 * 111.00027 * 170.00142 * 8 7 6 23 23 C 1.39342 * 119.84752 * 0.27822 * 6 4 3 24 Xx 1.56994 * 120.11163 * 179.72154 * 23 6 4 25 24 O 1.41998 * 120.00171 * 18.33034 * 24 23 6 26 25 O 1.42003 * 120.00416 * 198.32730 * 24 23 6 27 26 C 1.37955 * 119.92462 * 180.02562 * 2 1 3 28 27 H 1.08992 * 109.47236 * 90.00420 * 1 2 3 29 28 H 1.09007 * 109.46747 * 210.00060 * 1 2 3 30 29 H 1.09000 * 109.47300 * 329.99902 * 1 2 3 31 30 H 1.08004 * 119.89033 * 359.97438 * 3 2 1 32 31 H 1.09008 * 109.46986 * 217.09712 * 7 6 4 33 32 H 1.09003 * 109.47035 * 337.09293 * 7 6 4 34 33 H 1.09006 * 109.49555 * 296.77908 * 9 8 7 35 34 H 1.09000 * 109.49305 * 56.85137 * 9 8 7 36 35 H 1.08996 * 109.48837 * 298.43354 * 10 9 8 37 36 H 1.09006 * 109.48494 * 178.37133 * 10 9 8 38 37 H 1.08999 * 109.46773 * 179.38290 * 12 11 10 39 38 H 1.09000 * 109.47071 * 299.38546 * 12 11 10 40 39 H 0.97001 * 120.00073 * 179.97438 * 16 15 13 41 40 H 1.08998 * 109.48831 * 299.35082 * 21 11 10 42 41 H 1.08995 * 109.48807 * 179.29006 * 21 11 10 43 42 H 1.08997 * 109.48618 * 303.15655 * 22 8 7 44 43 H 1.09004 * 109.48983 * 63.21271 * 22 8 7 45 44 H 0.96697 * 114.00821 * 179.97438 * 25 24 23 46 45 H 0.96698 * 114.00159 * 179.97438 * 26 24 23 47 46 H 1.08003 * 120.03815 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1991 0.0000 4 6 3.5827 1.2063 0.0005 5 9 4.2515 2.3802 0.0000 6 6 4.2815 0.0136 0.0005 7 6 5.7885 0.0213 0.0005 8 7 6.2790 -0.1474 1.3749 9 6 5.9267 1.0124 2.2057 10 6 6.3843 0.7634 3.6449 11 7 7.8349 0.5287 3.6613 12 6 8.3254 0.3601 5.0357 13 6 7.6267 -0.8103 5.6784 14 1 6.9509 -1.4209 5.0980 15 6 7.8503 -1.1017 7.0074 16 7 8.6730 -0.3579 7.7142 17 14 6.9848 -2.5528 7.8038 18 1 7.8204 -3.7712 7.6529 19 1 6.7745 -2.2725 9.2469 20 1 5.6716 -2.7684 7.1449 21 6 8.1872 -0.6311 2.8304 22 6 7.7296 -0.3821 1.3913 23 6 3.5894 -1.1957 -0.0059 24 8 5.7428 -2.5845 0.3746 25 8 3.7233 -3.7517 -0.4055 26 6 2.1953 -1.1956 -0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6541 2.1327 -0.0004 31 1 6.1560 -0.7966 -0.6194 32 1 6.1470 0.9698 -0.3995 33 1 6.4206 1.9026 1.8160 34 1 4.8466 1.1581 2.1877 35 1 5.8699 -0.1108 4.0439 36 1 6.1499 1.6345 4.2569 37 1 9.3998 0.1770 5.0181 38 1 8.1203 1.2647 5.6082 39 1 8.8301 -0.5626 8.6492 40 1 7.6933 -1.5211 3.2202 41 1 9.2672 -0.7767 2.8485 42 1 7.9640 -1.2530 0.7793 43 1 8.2440 0.4921 0.9922 44 1 6.1421 -3.4645 0.3389 45 1 4.2889 -4.5356 -0.3779 46 1 1.6546 -2.1306 -0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250444959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:51 Heat of formation + Delta-G solvation = 100.833316 kcal Electronic energy + Delta-G solvation = -28523.982088 eV Core-core repulsion = 24451.125343 eV Total energy + Delta-G solvation = -4072.856745 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.171 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -48.57857 -39.24818 -38.40930 -36.43713 -34.85342 -32.42427 -30.52397 -29.92132 -29.50636 -28.82648 -28.28317 -28.00445 -26.15198 -23.90198 -23.14399 -22.28136 -21.69729 -20.15840 -19.78099 -18.48520 -16.96233 -16.25456 -16.00348 -15.81224 -15.42381 -15.07179 -14.98469 -14.84205 -14.38364 -13.99438 -13.80273 -13.37071 -13.18470 -13.09665 -13.01065 -12.83756 -12.45722 -12.33395 -12.10123 -12.06487 -11.86711 -11.66865 -11.41918 -11.36046 -11.22144 -10.98730 -10.88660 -10.83498 -10.70685 -10.53534 -10.29106 -10.27653 -9.16396 -8.20574 -8.14567 -8.12696 -7.44572 -6.99304 -6.71438 -6.44599 -5.46275 -3.85917 0.22571 1.56927 1.82021 1.94994 1.95981 2.20356 2.70356 2.76301 4.05465 4.09288 4.59764 4.68699 4.77560 5.10683 5.11286 5.20649 5.27544 5.30156 5.46016 5.49023 5.51098 5.58446 5.62795 5.74220 5.76476 5.80041 5.81042 5.88839 5.90920 6.07375 6.11073 6.16662 6.18250 6.23789 6.30460 6.42789 6.46765 6.52759 6.54069 6.74399 6.89690 7.17358 7.21087 7.26091 7.41846 7.79244 7.82676 7.89958 10.07018 10.40668 Molecular weight = 325.17amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.003595 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.242665 B = 7787.089363 C = 8141.444009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.053 4.053 3 C -0.190 4.190 4 C 0.107 3.893 5 F -0.139 7.139 6 C -0.134 4.134 7 C 0.123 3.877 8 N -0.493 5.493 9 C 0.053 3.947 10 C 0.058 3.942 11 N -0.539 5.539 12 C 0.092 3.908 13 C -0.122 4.122 14 H 0.134 0.866 15 C -0.063 4.063 16 N -0.616 5.616 17 Si 0.942 3.058 18 H -0.246 1.246 19 H -0.253 1.253 20 H -0.238 1.238 21 C 0.056 3.944 22 C 0.072 3.928 23 C 0.254 3.746 24 O -0.783 6.783 25 O -0.910 6.910 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.019 0.981 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.328 0.672 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.025 0.975 44 H 0.263 0.737 45 H 0.259 0.741 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 9.692 10.387 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.053 4.053 3 C -0.209 4.209 4 C 0.087 3.913 5 F -0.117 7.117 6 C -0.136 4.136 7 C -0.003 4.003 8 N -0.217 5.217 9 C -0.076 4.076 10 C -0.070 4.070 11 N -0.263 5.263 12 C -0.034 4.034 13 C -0.143 4.143 14 H 0.151 0.849 15 C -0.276 4.276 16 N -0.264 5.264 17 Si 0.760 3.240 18 H -0.169 1.169 19 H -0.176 1.176 20 H -0.161 1.161 21 C -0.071 4.071 22 C -0.056 4.056 23 C 0.231 3.769 24 O -0.597 6.597 25 O -0.729 6.729 26 C -0.159 4.159 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.150 0.850 31 H 0.134 0.866 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.401 10.986 10.433 15.215 hybrid contribution 0.626 -1.623 0.465 1.800 sum 2.026 9.363 10.898 14.510 Atomic orbital electron populations 1.20751 0.90130 1.02866 1.02515 1.19561 0.95877 0.90818 0.99079 1.20800 0.91782 0.98947 1.09357 1.17385 0.89580 0.79967 1.04360 1.91449 1.80911 1.45200 1.94182 1.20058 0.98543 0.88707 1.06274 1.20651 0.88948 1.00044 0.90692 1.61877 1.12693 1.36726 1.10401 1.22201 1.00113 0.92347 0.92941 1.22181 0.87203 1.00523 0.97119 1.62505 1.14350 1.39934 1.09509 1.21352 0.98969 0.95443 0.87662 1.26398 0.96286 0.97418 0.94148 0.84855 1.26689 0.99468 1.03509 0.97932 1.69905 1.15088 1.29212 1.12161 0.85506 0.81347 0.77564 0.79625 1.16930 1.17616 1.16066 1.22219 0.99701 0.91684 0.93525 1.21956 0.87600 1.00429 0.95597 1.30643 0.84689 0.76763 0.84844 1.93627 1.45603 1.24862 1.95643 1.93585 1.53533 1.28584 1.97214 1.21296 0.92843 0.98215 1.03509 0.90916 0.91059 0.91440 0.84971 0.86626 0.96282 0.94966 0.91198 0.93547 0.90906 0.87992 0.87947 0.85868 0.93195 0.90840 0.89468 0.95682 0.90756 0.91162 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.05 -0.91 5.87 -104.68 -0.61 -1.52 16 3 C -0.19 -3.16 9.67 -39.42 -0.38 -3.54 16 4 C 0.11 2.03 6.06 -39.47 -0.24 1.80 16 5 F -0.14 -2.47 15.88 2.25 0.04 -2.43 16 6 C -0.13 -3.02 4.71 -104.21 -0.49 -3.51 16 7 C 0.12 2.74 3.99 -4.98 -0.02 2.72 16 8 N -0.49 -10.27 3.66 -235.90 -0.86 -11.14 16 9 C 0.05 0.94 5.03 -3.76 -0.02 0.93 16 10 C 0.06 0.89 5.24 -3.77 -0.02 0.87 16 11 N -0.54 -7.82 4.92 -235.91 -1.16 -8.98 16 12 C 0.09 1.13 5.14 -4.97 -0.03 1.11 16 13 C -0.12 -1.49 7.66 -34.44 -0.26 -1.75 16 14 H 0.13 1.76 5.82 -52.49 -0.31 1.46 16 15 C -0.06 -0.70 5.46 -17.82 -0.10 -0.80 16 16 N -0.62 -6.79 13.29 55.43 0.74 -6.06 16 17 Si 0.94 9.48 29.54 -169.99 -5.02 4.46 16 18 H -0.25 -2.64 7.11 56.52 0.40 -2.24 16 19 H -0.25 -2.45 7.11 56.52 0.40 -2.04 16 20 H -0.24 -2.78 7.11 56.52 0.40 -2.38 16 21 C 0.06 0.89 5.31 -3.77 -0.02 0.87 16 22 C 0.07 1.34 5.42 -3.77 -0.02 1.32 16 23 C 0.25 6.70 9.65 -38.73 -0.37 6.32 16 24 O -0.78 -24.97 12.99 -57.73 -0.75 -25.72 16 25 O -0.91 -33.51 17.41 -57.73 -1.00 -34.52 16 26 C -0.14 -3.15 9.43 -39.25 -0.37 -3.52 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.87 8.08 -51.92 -0.42 0.45 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.12 2.96 6.23 -51.92 -0.32 2.64 16 32 H 0.02 0.39 7.42 -51.93 -0.39 0.00 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.31 6.22 -51.93 -0.32 0.98 16 35 H 0.05 0.77 6.64 -51.93 -0.34 0.43 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.21 8.12 -51.93 -0.42 0.79 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.33 2.97 8.31 -40.82 -0.34 2.63 16 40 H 0.05 0.87 6.76 -51.93 -0.35 0.52 16 41 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 42 H 0.09 1.77 7.69 -51.93 -0.40 1.37 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 8.41 8.90 45.56 0.41 8.81 16 45 H 0.26 9.22 8.90 45.56 0.41 9.62 16 46 H 0.14 3.38 7.91 -52.48 -0.42 2.96 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -37.94 379.64 -10.29 -48.23 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -5.39 Total: 30.11 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.60 Total: 0.31 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: -1.29 Total: -26.17 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: -1.75 Total: -60.23 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 9.48 SS G_CDS: -5.02 Total: 4.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.94 -10.29 -48.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250444959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.065 kcal (2) G-P(sol) polarization free energy of solvation -37.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds