Wall clock time and date at job start Tue Mar 31 2020 19:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38355 * 119.92072 * 2 1 4 4 C 1.38553 * 120.21757 * 179.97438 * 3 2 1 5 5 F 1.35101 * 119.96918 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.07223 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.07823 * 179.97438 * 6 4 3 8 8 N 1.46897 * 109.46949 * 97.09878 * 7 6 4 9 9 C 1.46955 * 110.99510 * 293.79582 * 8 7 6 10 10 C 1.53058 * 109.36110 * 176.81580 * 9 8 7 11 11 N 1.46950 * 109.36584 * 58.40280 * 10 9 8 12 12 C 1.46906 * 111.00059 * 176.81096 * 11 10 9 13 13 C 1.50703 * 109.46849 * 59.38108 * 12 11 10 14 14 H 1.07997 * 119.99898 * 4.89825 * 13 12 11 15 15 C 1.37877 * 119.99891 * 184.88697 * 13 12 11 16 16 N 1.31515 * 119.99723 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00029 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46948 * 90.00296 * 17 15 13 19 19 H 1.48501 * 109.47029 * 209.99994 * 17 15 13 20 20 H 1.48498 * 109.47084 * 330.00362 * 17 15 13 21 21 C 1.46957 * 110.88073 * 300.68001 * 11 10 9 22 22 C 1.46959 * 111.00027 * 170.00142 * 8 7 6 23 23 C 1.39342 * 119.84752 * 0.27822 * 6 4 3 24 Xx 1.56994 * 120.11163 * 179.72154 * 23 6 4 25 24 O 1.41998 * 120.00171 * 18.33034 * 24 23 6 26 25 O 1.42003 * 120.00416 * 198.32730 * 24 23 6 27 26 C 1.37955 * 119.92462 * 180.02562 * 2 1 3 28 27 H 1.08992 * 109.47236 * 90.00420 * 1 2 3 29 28 H 1.09007 * 109.46747 * 210.00060 * 1 2 3 30 29 H 1.09000 * 109.47300 * 329.99902 * 1 2 3 31 30 H 1.08004 * 119.89033 * 359.97438 * 3 2 1 32 31 H 1.09008 * 109.46986 * 217.09712 * 7 6 4 33 32 H 1.09003 * 109.47035 * 337.09293 * 7 6 4 34 33 H 1.09006 * 109.49555 * 296.77908 * 9 8 7 35 34 H 1.09000 * 109.49305 * 56.85137 * 9 8 7 36 35 H 1.08996 * 109.48837 * 298.43354 * 10 9 8 37 36 H 1.09006 * 109.48494 * 178.37133 * 10 9 8 38 37 H 1.08999 * 109.46773 * 179.38290 * 12 11 10 39 38 H 1.09000 * 109.47071 * 299.38546 * 12 11 10 40 39 H 0.97001 * 120.00073 * 179.97438 * 16 15 13 41 40 H 1.08998 * 109.48831 * 299.35082 * 21 11 10 42 41 H 1.08995 * 109.48807 * 179.29006 * 21 11 10 43 42 H 1.08997 * 109.48618 * 303.15655 * 22 8 7 44 43 H 1.09004 * 109.48983 * 63.21271 * 22 8 7 45 44 H 0.96697 * 114.00821 * 179.97438 * 25 24 23 46 45 H 0.96698 * 114.00159 * 179.97438 * 26 24 23 47 46 H 1.08003 * 120.03815 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1991 0.0000 4 6 3.5827 1.2063 0.0005 5 9 4.2515 2.3802 0.0000 6 6 4.2815 0.0136 0.0005 7 6 5.7885 0.0213 0.0005 8 7 6.2790 -0.1474 1.3749 9 6 5.9267 1.0124 2.2057 10 6 6.3843 0.7634 3.6449 11 7 7.8349 0.5287 3.6613 12 6 8.3254 0.3601 5.0357 13 6 7.6267 -0.8103 5.6784 14 1 6.9509 -1.4209 5.0980 15 6 7.8503 -1.1017 7.0074 16 7 8.6730 -0.3579 7.7142 17 14 6.9848 -2.5528 7.8038 18 1 7.8204 -3.7712 7.6529 19 1 6.7745 -2.2725 9.2469 20 1 5.6716 -2.7684 7.1449 21 6 8.1872 -0.6311 2.8304 22 6 7.7296 -0.3821 1.3913 23 6 3.5894 -1.1957 -0.0059 24 8 5.7428 -2.5845 0.3746 25 8 3.7233 -3.7517 -0.4055 26 6 2.1953 -1.1956 -0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6541 2.1327 -0.0004 31 1 6.1560 -0.7966 -0.6194 32 1 6.1470 0.9698 -0.3995 33 1 6.4206 1.9026 1.8160 34 1 4.8466 1.1581 2.1877 35 1 5.8699 -0.1108 4.0439 36 1 6.1499 1.6345 4.2569 37 1 9.3998 0.1770 5.0181 38 1 8.1203 1.2647 5.6082 39 1 8.8301 -0.5626 8.6492 40 1 7.6933 -1.5211 3.2202 41 1 9.2672 -0.7767 2.8485 42 1 7.9640 -1.2530 0.7793 43 1 8.2440 0.4921 0.9922 44 1 6.1421 -3.4645 0.3389 45 1 4.2889 -4.5356 -0.3779 46 1 1.6546 -2.1306 -0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250444959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:49 Heat of formation + Delta-G solvation = 64.026473 kcal Electronic energy + Delta-G solvation = -28525.578152 eV Core-core repulsion = 24451.125343 eV Total energy + Delta-G solvation = -4074.452809 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.171 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.24200 -40.83852 -40.13691 -37.70235 -36.09681 -34.05452 -31.94034 -31.53642 -31.15495 -30.99113 -30.41479 -29.38403 -27.47363 -25.30906 -24.57862 -23.68791 -23.65822 -21.83026 -21.12920 -19.62751 -18.03635 -17.90175 -17.82821 -17.28833 -17.16561 -16.48826 -16.23401 -16.08319 -15.90294 -15.35189 -15.17125 -14.65214 -14.60597 -14.32393 -14.31607 -14.20159 -13.98951 -13.63479 -13.43229 -13.40392 -13.33328 -13.24846 -13.01054 -12.88298 -12.79471 -12.62317 -12.39608 -12.28173 -12.27116 -11.84824 -11.71495 -11.53715 -10.22297 -10.11911 -9.96730 -9.34776 -9.26490 -8.99215 -8.94665 -8.86570 -8.05020 -4.80867 -1.93725 -0.32924 -0.23379 1.08634 1.09300 1.35720 1.86143 1.88228 2.08043 2.77514 2.87293 3.04802 3.27034 3.44027 3.54723 3.83062 3.84452 3.86661 3.91338 4.08304 4.18051 4.20982 4.24632 4.32269 4.43136 4.46009 4.48975 4.56439 4.60139 4.64547 4.68069 4.78689 4.84992 4.86947 4.88312 4.95056 5.05882 5.15179 5.15908 5.20651 5.25995 5.32639 5.49937 5.91587 5.97171 6.20346 6.35154 6.95523 7.56085 7.93206 Molecular weight = 325.17amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.003595 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.242665 B = 7787.089363 C = 8141.444009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.007 4.007 3 C -0.132 4.132 4 C 0.140 3.860 5 F -0.110 7.110 6 C -0.146 4.146 7 C 0.125 3.875 8 N -0.525 5.525 9 C 0.055 3.945 10 C 0.060 3.940 11 N -0.532 5.532 12 C 0.100 3.900 13 C -0.134 4.134 14 H 0.114 0.886 15 C -0.062 4.062 16 N -0.613 5.613 17 Si 0.978 3.022 18 H -0.259 1.259 19 H -0.235 1.235 20 H -0.269 1.269 21 C 0.066 3.934 22 C 0.077 3.923 23 C 0.303 3.697 24 O -0.873 6.873 25 O -1.112 7.112 26 C -0.149 4.149 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.212 0.788 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.342 0.658 40 H 0.023 0.977 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.237 0.763 45 H 0.220 0.780 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 18.872 12.446 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.008 4.008 3 C -0.149 4.149 4 C 0.120 3.880 5 F -0.089 7.089 6 C -0.148 4.148 7 C -0.003 4.003 8 N -0.249 5.249 9 C -0.073 4.073 10 C -0.068 4.068 11 N -0.256 5.256 12 C -0.026 4.026 13 C -0.154 4.154 14 H 0.132 0.868 15 C -0.274 4.274 16 N -0.262 5.262 17 Si 0.797 3.203 18 H -0.183 1.183 19 H -0.157 1.157 20 H -0.194 1.194 21 C -0.062 4.062 22 C -0.051 4.051 23 C 0.285 3.715 24 O -0.685 6.685 25 O -0.935 6.935 26 C -0.167 4.167 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.137 0.863 30 H 0.229 0.771 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.041 0.959 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.157 20.276 12.535 23.935 hybrid contribution 1.374 -3.517 -0.115 3.777 sum -0.783 16.759 12.419 20.874 Atomic orbital electron populations 1.21049 0.84388 1.05722 1.05187 1.20084 0.98775 0.87058 0.94833 1.21705 0.90071 1.01364 1.01789 1.16998 0.90049 0.78179 1.02811 1.91555 1.80859 1.42727 1.93713 1.20216 0.99713 0.88236 1.06627 1.20463 0.88313 0.99710 0.91769 1.61742 1.14301 1.39137 1.09729 1.22272 1.00045 0.91314 0.93704 1.22193 0.87559 1.01127 0.95903 1.62533 1.13796 1.38480 1.10758 1.21373 0.99219 0.95867 0.86145 1.26248 0.96715 0.97755 0.94707 0.86788 1.26683 0.99521 1.03756 0.97471 1.69846 1.14253 1.29023 1.13109 0.85004 0.79052 0.76368 0.79872 1.18298 1.15712 1.19371 1.22078 1.00699 0.91456 0.91980 1.21862 0.86678 0.99449 0.97131 1.28543 0.82780 0.61685 0.98481 1.93503 1.55713 1.22778 1.96465 1.93565 1.63975 1.36858 1.99125 1.21613 0.89491 1.01296 1.04315 0.88040 0.90746 0.86292 0.77106 0.91736 0.92798 0.93484 0.91419 0.95468 0.87529 0.87166 0.86508 0.84369 0.95865 0.88490 0.93280 0.93888 0.93618 0.95306 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.01 -0.18 5.87 -19.90 -0.12 -0.29 16 3 C -0.13 -2.85 9.67 22.37 0.22 -2.63 16 4 C 0.14 4.19 6.06 22.34 0.14 4.33 16 5 F -0.11 -2.89 15.88 44.97 0.71 -2.17 16 6 C -0.15 -6.31 4.71 -19.60 -0.09 -6.40 16 7 C 0.12 5.67 3.99 85.56 0.34 6.01 16 8 N -0.52 -22.64 3.66 -900.26 -3.29 -25.93 16 9 C 0.05 1.81 5.03 86.31 0.43 2.25 16 10 C 0.06 1.74 5.24 86.31 0.45 2.19 16 11 N -0.53 -14.68 4.92 -900.29 -4.43 -19.10 16 12 C 0.10 2.26 5.14 85.56 0.44 2.70 16 13 C -0.13 -3.25 7.66 25.60 0.20 -3.05 16 14 H 0.11 3.26 5.82 -2.91 -0.02 3.24 16 15 C -0.06 -1.31 5.46 84.65 0.46 -0.84 16 16 N -0.61 -12.14 13.29 21.45 0.28 -11.86 16 17 Si 0.98 19.54 29.54 68.60 2.03 21.57 16 18 H -0.26 -5.71 7.11 99.48 0.71 -5.00 16 19 H -0.23 -4.02 7.11 99.48 0.71 -3.32 16 20 H -0.27 -6.74 7.11 99.48 0.71 -6.04 16 21 C 0.07 2.19 5.31 86.31 0.46 2.65 16 22 C 0.08 3.04 5.42 86.31 0.47 3.51 16 23 C 0.30 16.48 9.65 22.82 0.22 16.70 16 24 O -0.87 -66.11 12.99 -127.47 -1.66 -67.76 16 25 O -1.11 -98.56 17.41 -127.47 -2.22 -100.78 16 26 C -0.15 -6.39 9.43 22.49 0.21 -6.18 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 29 H 0.12 0.86 8.08 -2.39 -0.02 0.84 16 30 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.06 3.67 6.23 -2.38 -0.01 3.66 16 32 H 0.05 2.07 7.42 -2.39 -0.02 2.05 16 33 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.07 2.21 6.22 -2.39 -0.01 2.19 16 35 H 0.03 0.90 6.64 -2.39 -0.02 0.88 16 36 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.11 2.37 8.12 -2.39 -0.02 2.35 16 38 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.34 5.30 8.31 -92.71 -0.77 4.53 16 40 H 0.02 0.90 6.76 -2.39 -0.02 0.88 16 41 H 0.10 2.73 8.13 -2.39 -0.02 2.71 16 42 H 0.05 2.31 7.69 -2.39 -0.02 2.29 16 43 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.24 18.87 8.90 -74.06 -0.66 18.22 16 45 H 0.22 19.83 8.90 -74.06 -0.66 19.17 16 46 H 0.14 6.52 7.91 -2.91 -0.02 6.49 16 Total: -1.00 -114.35 379.64 -4.33 -118.69 By element: Atomic # 1 Polarization: 67.62 SS G_CDS: -0.30 Total: 67.31 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 4.54 Total: 20.04 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -7.44 Total: -56.89 kcal Atomic # 8 Polarization: -164.67 SS G_CDS: -3.87 Total: -168.54 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.71 Total: -2.17 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: 2.03 Total: 21.57 kcal Total: -114.35 -4.33 -118.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250444959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.715 kcal (2) G-P(sol) polarization free energy of solvation -114.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -118.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds