Wall clock time and date at job start Tue Mar 31 2020 19:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47318 * 2 1 4 4 C 1.53001 * 109.47143 * 120.00437 * 2 1 3 5 5 O 1.42895 * 109.47497 * 64.99606 * 4 2 1 6 6 C 1.42900 * 114.00283 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.46932 * 29.99914 * 6 5 4 8 8 C 1.53004 * 109.47275 * 270.00323 * 6 5 4 9 9 C 1.50697 * 109.47123 * 149.99827 * 6 5 4 10 10 N 1.29952 * 126.28671 * 45.03135 * 9 6 5 11 11 O 1.21297 * 110.24691 * 179.97438 * 10 9 6 12 12 C 1.33637 * 109.81737 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.55464 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.47245 * 276.11899 * 13 12 11 15 15 C 1.46891 * 110.99878 * 167.18424 * 14 13 12 16 16 C 1.50707 * 109.47237 * 189.99618 * 15 14 13 17 17 H 1.08000 * 119.99401 * 0.02562 * 16 15 14 18 18 C 1.37867 * 120.00430 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99762 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00398 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46860 * 89.99999 * 20 18 16 22 22 H 1.48498 * 109.47692 * 209.99909 * 20 18 16 23 23 H 1.48499 * 109.47070 * 330.00633 * 20 18 16 24 24 C 1.46906 * 110.99701 * 291.13716 * 14 13 12 25 25 C 1.53003 * 109.46915 * 297.69321 * 24 14 13 26 26 C 1.47206 * 109.46843 * 180.61033 * 25 24 14 27 27 N 8.61907 * 66.42057 * 104.27558 * 2 1 3 28 28 N 1.31135 * 106.89502 * 0.23077 * 12 11 10 29 29 H 1.08993 * 109.47003 * 300.00249 * 1 2 3 30 30 H 1.09007 * 109.46926 * 60.00131 * 1 2 3 31 31 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47370 * 240.00180 * 2 1 3 33 33 H 1.08999 * 109.47265 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47015 * 299.99815 * 3 2 1 35 35 H 1.08993 * 109.47287 * 59.99925 * 3 2 1 36 36 H 1.09002 * 109.46970 * 304.99476 * 4 2 1 37 37 H 1.09007 * 109.46889 * 184.99855 * 4 2 1 38 38 H 1.09001 * 109.46807 * 299.99667 * 8 6 5 39 39 H 1.09004 * 109.46929 * 59.99498 * 8 6 5 40 40 H 1.08995 * 109.46848 * 179.97438 * 8 6 5 41 41 H 1.08995 * 109.46833 * 156.10989 * 13 12 11 42 42 H 1.09006 * 109.46580 * 36.11415 * 13 12 11 43 43 H 1.09001 * 109.47529 * 309.99539 * 15 14 13 44 44 H 1.09006 * 109.47112 * 69.99898 * 15 14 13 45 45 H 0.97005 * 119.99927 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.46850 * 57.68985 * 24 14 13 47 47 H 1.08998 * 109.47233 * 177.69152 * 24 14 13 48 48 H 1.08999 * 109.46720 * 300.60640 * 25 24 14 49 49 H 1.09000 * 109.47699 * 60.60802 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0913 -2.8662 2.3180 7 1 2.1382 -2.2252 3.1983 8 6 3.4775 -3.4504 2.0382 9 6 1.1141 -3.9867 2.5639 10 7 0.6013 -4.7714 1.6638 11 8 -0.1497 -5.5704 2.1823 12 6 -0.1882 -5.3655 3.5023 13 6 -0.9987 -6.1421 4.5079 14 7 -2.3635 -5.6014 4.5594 15 6 -3.2611 -6.5065 5.2893 16 6 -4.6865 -6.0496 5.1139 17 1 -4.9038 -5.1746 4.5193 18 6 -5.7132 -6.7492 5.7116 19 7 -5.4486 -7.8150 6.4353 20 14 -7.4799 -6.1825 5.4948 21 1 -8.0655 -6.8350 4.2962 22 1 -8.2699 -6.5538 6.6962 23 1 -7.5088 -4.7082 5.3195 24 6 -2.3751 -4.2573 5.1522 25 6 -1.8734 -4.3322 6.5957 26 6 -1.8989 -2.9877 7.1944 27 7 -1.9178 -1.9479 7.6555 28 7 0.6098 -4.3560 3.7547 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6054 -0.2618 2.1369 37 1 3.1264 -0.6444 1.2951 38 1 3.4306 -4.0914 1.1578 39 1 4.1842 -2.6398 1.8603 40 1 3.8051 -4.0358 2.8972 41 1 -0.5363 -6.0563 5.4912 42 1 -1.0343 -7.1911 4.2134 43 1 -3.1533 -7.5183 4.8986 44 1 -3.0042 -6.4967 6.3486 45 1 -6.1710 -8.3075 6.8556 46 1 -1.7247 -3.6001 4.5751 47 1 -3.3916 -3.8639 5.1408 48 1 -2.5175 -4.9980 7.1700 49 1 -0.8530 -4.7154 6.6063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072515863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:48 Heat of formation + Delta-G solvation = 43.837692 kcal Electronic energy + Delta-G solvation = -29223.454609 eV Core-core repulsion = 25189.309004 eV Total energy + Delta-G solvation = -4034.145606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.42597 -38.97860 -38.16027 -36.17398 -35.99511 -35.10487 -33.13961 -32.50263 -31.06212 -30.35471 -28.13917 -27.39966 -26.58481 -25.84029 -24.81801 -23.92790 -23.01461 -21.15444 -20.58707 -19.99208 -17.92169 -17.61019 -17.40925 -16.94786 -16.35634 -16.22182 -15.54986 -15.37371 -14.91351 -14.59129 -14.51223 -14.30382 -14.11337 -13.85703 -13.59744 -13.36614 -12.84628 -12.80027 -12.65849 -12.49607 -12.31824 -12.28859 -12.10188 -12.06821 -11.70657 -11.62795 -11.54253 -11.42502 -11.28555 -11.22811 -11.16132 -10.94389 -10.85956 -10.81402 -10.74099 -10.31977 -10.11953 -9.98071 -9.77956 -9.43442 -8.57071 -7.70342 -6.17049 -4.18862 1.30980 2.20413 2.98967 3.05099 3.08530 3.10650 3.27085 3.34199 3.37473 3.81515 4.12598 4.28493 4.35709 4.52100 4.54248 4.68506 4.75947 4.81169 4.85478 5.08495 5.13284 5.17392 5.20317 5.27954 5.28983 5.34507 5.39267 5.42619 5.44797 5.56350 5.58409 5.60359 5.65669 5.76868 5.79281 5.83305 5.86723 5.99877 6.07441 6.12652 6.14443 6.48363 6.85848 6.91099 7.01180 7.53481 7.69252 7.89204 7.90583 8.24089 8.32700 8.87577 9.46789 10.93245 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.002679 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.748588 B =10448.818909 C =10750.882384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.065 3.935 5 O -0.369 6.369 6 C 0.184 3.816 7 H 0.090 0.910 8 C -0.167 4.167 9 C 0.160 3.840 10 N -0.363 5.363 11 O 0.091 5.909 12 C 0.210 3.790 13 C 0.129 3.871 14 N -0.522 5.522 15 C 0.188 3.812 16 C -0.513 4.513 17 H 0.065 0.935 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.069 3.931 25 C -0.071 4.071 26 C 0.226 3.774 27 N -0.460 5.460 28 N -0.483 5.483 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.041 0.959 44 H 0.008 0.992 45 H 0.263 0.737 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.124 0.876 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.387 8.767 -8.105 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.287 6.287 6 C 0.125 3.875 7 H 0.108 0.892 8 C -0.225 4.225 9 C -0.113 4.113 10 N -0.069 5.069 11 O 0.030 5.970 12 C -0.011 4.011 13 C -0.001 4.001 14 N -0.246 5.246 15 C 0.065 3.935 16 C -0.551 4.551 17 H 0.084 0.916 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.062 4.062 25 C -0.113 4.113 26 C -0.091 4.091 27 N -0.137 5.137 28 N -0.218 5.218 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.059 0.941 44 H 0.026 0.974 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.142 0.858 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.390 10.508 -8.569 22.051 hybrid contribution -0.712 -0.281 0.865 1.155 sum 16.677 10.227 -7.704 21.026 Atomic orbital electron populations 1.21799 0.94333 1.02739 1.01496 1.21088 0.96997 0.95498 0.97637 1.21790 1.00946 0.95198 1.02391 1.22716 0.98552 0.81259 0.98644 1.87991 1.78601 1.20393 1.41735 1.19880 0.89181 0.88015 0.90471 0.89227 1.22242 0.94828 1.02119 1.03342 1.25327 1.01092 0.99958 0.84932 1.74648 1.06683 1.03590 1.21963 1.85347 1.46903 1.43389 1.21366 1.28960 0.94358 0.93064 0.84707 1.20739 0.89591 0.97343 0.92398 1.62417 1.03910 1.03447 1.54855 1.19951 0.90592 0.91411 0.91570 1.21060 0.90058 1.12730 1.31272 0.91638 1.24918 0.99295 0.94889 0.95037 1.69926 1.32700 1.17801 1.32951 0.86518 0.84328 0.79134 0.77617 1.20534 1.21303 1.19818 1.22111 1.03076 0.92020 0.88955 1.20173 1.04750 0.86744 0.99629 1.29210 0.92290 0.94840 0.92805 1.81202 1.09874 1.12383 1.10285 1.71848 1.12651 1.12067 1.25254 0.92828 0.92714 0.91723 0.90281 0.92541 0.91920 0.92419 0.92964 0.93046 0.91113 0.91139 0.90970 0.89923 0.86842 0.94146 0.97401 0.92708 0.91802 0.88418 0.85777 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.09 37.16 0.34 -1.10 16 2 C -0.09 -0.81 3.16 -90.62 -0.29 -1.09 16 3 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 4 C 0.06 0.60 5.13 37.16 0.19 0.79 16 5 O -0.37 -4.56 9.51 -35.23 -0.33 -4.90 16 6 C 0.18 2.15 3.27 -27.88 -0.09 2.06 16 7 H 0.09 0.95 7.79 -51.93 -0.40 0.54 16 8 C -0.17 -1.55 9.51 37.16 0.35 -1.20 16 9 C 0.16 2.34 7.10 -156.37 -1.11 1.23 16 10 N -0.36 -5.84 12.16 30.90 0.38 -5.46 16 11 O 0.09 1.44 11.31 18.12 0.20 1.64 16 12 C 0.21 3.05 7.12 -13.05 -0.09 2.96 16 13 C 0.13 1.75 5.42 -4.97 -0.03 1.73 16 14 N -0.52 -8.95 4.67 -237.51 -1.11 -10.06 16 15 C 0.19 3.91 4.50 -4.98 -0.02 3.89 16 16 C -0.51 -12.51 8.49 -34.44 -0.29 -12.80 16 17 H 0.07 1.62 7.11 -52.49 -0.37 1.25 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.89 -23.85 13.29 55.43 0.74 -23.11 16 20 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.07 1.11 4.95 -3.82 -0.02 1.09 16 25 C -0.07 -1.01 5.06 -29.51 -0.15 -1.16 16 26 C 0.23 3.62 15.44 -20.71 -0.32 3.30 16 27 N -0.46 -8.33 18.55 42.22 0.78 -7.55 16 28 N -0.48 -7.09 11.14 -9.87 -0.11 -7.20 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.77 7.82 -51.93 -0.41 0.37 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.05 0.38 7.87 -51.93 -0.41 -0.02 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.96 5.97 -51.93 -0.31 0.65 16 42 H 0.11 1.38 7.87 -51.93 -0.41 0.97 16 43 H 0.04 0.90 7.90 -51.93 -0.41 0.49 16 44 H 0.01 0.17 6.04 -51.93 -0.31 -0.14 16 45 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 46 H 0.06 1.03 6.99 -51.93 -0.36 0.67 16 47 H 0.10 1.77 6.81 -51.93 -0.35 1.42 16 48 H 0.12 1.87 6.28 -51.93 -0.33 1.55 16 49 H 0.10 1.21 6.30 -51.93 -0.33 0.88 16 LS Contribution 408.54 15.07 6.16 6.16 Total: -1.00 -29.19 408.54 -7.35 -36.55 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.75 Total: -1.86 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.28 Total: 0.55 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.68 Total: -53.38 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -0.13 Total: -3.26 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.19 -7.35 -36.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072515863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.384 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds