Wall clock time and date at job start Tue Mar 31 2020 19:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47318 * 2 1 4 4 C 1.53001 * 109.47143 * 120.00437 * 2 1 3 5 5 O 1.42895 * 109.47497 * 64.99606 * 4 2 1 6 6 C 1.42900 * 114.00283 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.46932 * 29.99914 * 6 5 4 8 8 C 1.53004 * 109.47275 * 270.00323 * 6 5 4 9 9 C 1.50697 * 109.47123 * 149.99827 * 6 5 4 10 10 N 1.29952 * 126.28671 * 45.03135 * 9 6 5 11 11 O 1.21297 * 110.24691 * 179.97438 * 10 9 6 12 12 C 1.33637 * 109.81737 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.55464 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.47245 * 276.11899 * 13 12 11 15 15 C 1.46891 * 110.99878 * 167.18424 * 14 13 12 16 16 C 1.50707 * 109.47237 * 189.99618 * 15 14 13 17 17 H 1.08000 * 119.99401 * 0.02562 * 16 15 14 18 18 C 1.37867 * 120.00430 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99762 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00398 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46860 * 89.99999 * 20 18 16 22 22 H 1.48498 * 109.47692 * 209.99909 * 20 18 16 23 23 H 1.48499 * 109.47070 * 330.00633 * 20 18 16 24 24 C 1.46906 * 110.99701 * 291.13716 * 14 13 12 25 25 C 1.53003 * 109.46915 * 297.69321 * 24 14 13 26 26 C 1.47206 * 109.46843 * 180.61033 * 25 24 14 27 27 N 8.61907 * 66.42057 * 104.27558 * 2 1 3 28 28 N 1.31135 * 106.89502 * 0.23077 * 12 11 10 29 29 H 1.08993 * 109.47003 * 300.00249 * 1 2 3 30 30 H 1.09007 * 109.46926 * 60.00131 * 1 2 3 31 31 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47370 * 240.00180 * 2 1 3 33 33 H 1.08999 * 109.47265 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47015 * 299.99815 * 3 2 1 35 35 H 1.08993 * 109.47287 * 59.99925 * 3 2 1 36 36 H 1.09002 * 109.46970 * 304.99476 * 4 2 1 37 37 H 1.09007 * 109.46889 * 184.99855 * 4 2 1 38 38 H 1.09001 * 109.46807 * 299.99667 * 8 6 5 39 39 H 1.09004 * 109.46929 * 59.99498 * 8 6 5 40 40 H 1.08995 * 109.46848 * 179.97438 * 8 6 5 41 41 H 1.08995 * 109.46833 * 156.10989 * 13 12 11 42 42 H 1.09006 * 109.46580 * 36.11415 * 13 12 11 43 43 H 1.09001 * 109.47529 * 309.99539 * 15 14 13 44 44 H 1.09006 * 109.47112 * 69.99898 * 15 14 13 45 45 H 0.97005 * 119.99927 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.46850 * 57.68985 * 24 14 13 47 47 H 1.08998 * 109.47233 * 177.69152 * 24 14 13 48 48 H 1.08999 * 109.46720 * 300.60640 * 25 24 14 49 49 H 1.09000 * 109.47699 * 60.60802 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1920 6 6 2.0913 -2.8662 2.3180 7 1 2.1382 -2.2252 3.1983 8 6 3.4775 -3.4504 2.0382 9 6 1.1141 -3.9867 2.5639 10 7 0.6013 -4.7714 1.6638 11 8 -0.1497 -5.5704 2.1823 12 6 -0.1882 -5.3655 3.5023 13 6 -0.9987 -6.1421 4.5079 14 7 -2.3635 -5.6014 4.5594 15 6 -3.2611 -6.5065 5.2893 16 6 -4.6865 -6.0496 5.1139 17 1 -4.9038 -5.1746 4.5193 18 6 -5.7132 -6.7492 5.7116 19 7 -5.4486 -7.8150 6.4353 20 14 -7.4799 -6.1825 5.4948 21 1 -8.0655 -6.8350 4.2962 22 1 -8.2699 -6.5538 6.6962 23 1 -7.5088 -4.7082 5.3195 24 6 -2.3751 -4.2573 5.1522 25 6 -1.8734 -4.3322 6.5957 26 6 -1.8989 -2.9877 7.1944 27 7 -1.9178 -1.9479 7.6555 28 7 0.6098 -4.3560 3.7547 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6054 -0.2618 2.1369 37 1 3.1264 -0.6444 1.2951 38 1 3.4306 -4.0914 1.1578 39 1 4.1842 -2.6398 1.8603 40 1 3.8051 -4.0358 2.8972 41 1 -0.5363 -6.0563 5.4912 42 1 -1.0343 -7.1911 4.2134 43 1 -3.1533 -7.5183 4.8986 44 1 -3.0042 -6.4967 6.3486 45 1 -6.1710 -8.3075 6.8556 46 1 -1.7247 -3.6001 4.5751 47 1 -3.3916 -3.8639 5.1408 48 1 -2.5175 -4.9980 7.1700 49 1 -0.8530 -4.7154 6.6063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072515863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:47 Heat of formation + Delta-G solvation = 25.198042 kcal Electronic energy + Delta-G solvation = -29224.262885 eV Core-core repulsion = 25189.309004 eV Total energy + Delta-G solvation = -4034.953881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.58942 -39.80909 -39.51528 -37.38267 -37.08936 -36.02656 -34.77553 -33.84908 -32.06294 -31.57697 -29.66182 -28.07981 -27.34375 -27.22530 -25.78875 -25.43891 -24.22608 -22.39051 -21.39199 -21.15073 -19.11327 -18.95232 -18.53159 -18.15991 -17.76213 -17.03923 -16.89310 -16.39591 -16.36123 -15.83959 -15.76119 -15.31260 -15.27488 -14.83742 -14.71052 -14.31648 -14.18352 -13.83559 -13.58779 -13.54320 -13.47136 -13.34454 -13.11208 -13.06550 -12.99101 -12.96494 -12.81803 -12.60013 -12.55114 -12.41924 -12.33053 -12.10361 -12.01429 -11.90572 -11.83992 -11.58783 -11.56208 -11.30419 -11.01987 -10.71935 -10.49424 -9.10534 -8.11701 -6.16225 0.14750 1.09099 1.45993 1.49694 1.56703 1.74696 1.80190 1.88715 2.14220 2.47333 2.87950 2.94491 3.14265 3.24521 3.46092 3.71335 3.83838 3.96843 3.99828 4.08853 4.14228 4.15391 4.16848 4.37888 4.40349 4.41143 4.56094 4.57847 4.65639 4.67987 4.72869 4.75906 4.78942 4.84133 4.93254 4.94480 5.00142 5.12068 5.14123 5.18384 5.35587 5.36338 5.37899 5.39560 5.73545 6.07773 6.10091 6.21063 6.53390 6.60419 6.97058 7.17679 7.51817 8.97776 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.002679 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.748588 B =10448.818909 C =10750.882384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.141 4.141 4 C 0.060 3.940 5 O -0.393 6.393 6 C 0.179 3.821 7 H 0.102 0.898 8 C -0.159 4.159 9 C 0.160 3.840 10 N -0.386 5.386 11 O 0.076 5.924 12 C 0.212 3.788 13 C 0.131 3.869 14 N -0.534 5.534 15 C 0.202 3.798 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.017 3.983 19 N -0.922 5.922 20 Si 0.944 3.056 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.075 3.925 25 C -0.059 4.059 26 C 0.244 3.756 27 N -0.495 5.495 28 N -0.485 5.485 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.027 0.973 44 H 0.011 0.989 45 H 0.263 0.737 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.120 0.880 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.065 9.613 -8.030 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.198 4.198 4 C -0.016 4.016 5 O -0.311 6.311 6 C 0.120 3.880 7 H 0.120 0.880 8 C -0.217 4.217 9 C -0.113 4.113 10 N -0.094 5.094 11 O 0.018 5.982 12 C -0.009 4.009 13 C 0.002 3.998 14 N -0.258 5.258 15 C 0.077 3.923 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.182 4.182 19 N -0.563 5.563 20 Si 0.771 3.229 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.055 4.055 25 C -0.101 4.101 26 C -0.072 4.072 27 N -0.174 5.174 28 N -0.220 5.220 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.147 0.853 43 H 0.045 0.955 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.138 0.862 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 19.064 11.356 -8.500 23.762 hybrid contribution -1.203 -0.501 0.778 1.518 sum 17.861 10.855 -7.722 22.282 Atomic orbital electron populations 1.21782 0.95624 1.00925 1.01924 1.21115 0.95882 0.96855 0.97316 1.21754 1.01763 0.93513 1.02764 1.22910 0.99995 0.79853 0.98841 1.87970 1.79245 1.21856 1.42071 1.20152 0.89413 0.87539 0.90923 0.88033 1.22200 0.93822 1.02717 1.02976 1.25965 1.00735 1.00081 0.84557 1.74651 1.07604 1.04406 1.22759 1.85324 1.47237 1.43722 1.21907 1.29105 0.94312 0.93009 0.84465 1.20873 0.87583 0.97825 0.93528 1.62162 1.05765 1.03242 1.54647 1.19615 0.89677 0.91103 0.91872 1.21396 0.92124 1.11965 1.30068 0.92557 1.25504 1.02168 0.95206 0.95307 1.69995 1.33353 1.18778 1.34143 0.85764 0.81190 0.78595 0.77329 1.20553 1.21268 1.19795 1.21942 1.01840 0.91445 0.90243 1.20150 1.06368 0.85697 0.97837 1.29428 0.91121 0.94760 0.91936 1.81222 1.11234 1.13487 1.11447 1.71860 1.12795 1.12010 1.25377 0.92995 0.91711 0.94553 0.90691 0.91201 0.91347 0.92270 0.92962 0.90737 0.92468 0.88709 0.90261 0.87143 0.85327 0.95506 0.97102 0.92847 0.91564 0.90837 0.86175 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.09 71.98 0.65 -2.17 16 2 C -0.09 -1.50 3.16 -10.79 -0.03 -1.53 16 3 C -0.14 -1.56 9.19 71.98 0.66 -0.90 16 4 C 0.06 1.01 5.13 71.98 0.37 1.38 16 5 O -0.39 -9.36 9.51 -148.98 -1.42 -10.78 16 6 C 0.18 3.93 3.27 29.85 0.10 4.02 16 7 H 0.10 1.94 7.79 -2.39 -0.02 1.92 16 8 C -0.16 -2.63 9.51 71.98 0.68 -1.94 16 9 C 0.16 4.52 7.10 138.46 0.98 5.50 16 10 N -0.39 -12.30 12.16 -60.33 -0.73 -13.03 16 11 O 0.08 2.37 11.31 74.89 0.85 3.22 16 12 C 0.21 5.88 7.12 88.38 0.63 6.51 16 13 C 0.13 3.30 5.42 85.56 0.46 3.76 16 14 N -0.53 -17.71 4.67 -905.34 -4.23 -21.94 16 15 C 0.20 8.25 4.50 85.56 0.39 8.63 16 16 C -0.52 -25.15 8.49 25.60 0.22 -24.94 16 17 H 0.06 2.80 7.11 -2.91 -0.02 2.78 16 18 C 0.02 0.88 5.46 84.65 0.46 1.34 16 19 N -0.92 -49.06 13.29 21.44 0.28 -48.77 16 20 Si 0.94 41.56 29.54 68.60 2.03 43.59 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C 0.08 2.36 4.95 86.30 0.43 2.79 16 25 C -0.06 -1.56 5.06 28.79 0.15 -1.41 16 26 C 0.24 7.49 15.44 89.43 1.38 8.87 16 27 N -0.50 -17.50 18.55 20.03 0.37 -17.13 16 28 N -0.49 -13.47 11.14 -303.21 -3.38 -16.85 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.04 0.89 7.82 -2.39 -0.02 0.88 16 32 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 37 H 0.07 0.91 7.87 -2.38 -0.02 0.89 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.09 7.87 -2.38 -0.02 1.07 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.11 2.19 5.97 -2.39 -0.01 2.18 16 42 H 0.13 2.88 7.87 -2.38 -0.02 2.86 16 43 H 0.03 1.18 7.90 -2.39 -0.02 1.16 16 44 H 0.01 0.46 6.04 -2.38 -0.01 0.44 16 45 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 46 H 0.07 2.06 6.99 -2.39 -0.02 2.04 16 47 H 0.07 2.66 6.81 -2.39 -0.02 2.65 16 48 H 0.12 3.41 6.28 -2.39 -0.01 3.39 16 49 H 0.13 2.71 6.30 -2.39 -0.02 2.69 16 Total: -1.00 -62.62 408.54 2.25 -60.37 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.95 Total: 11.40 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 7.53 Total: 9.93 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -7.69 Total: -117.73 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.57 Total: -7.56 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -62.62 2.25 -60.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072515863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.567 kcal (2) G-P(sol) polarization free energy of solvation -62.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds