Wall clock time and date at job start Tue Mar 31 2020 20:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47487 * 2 1 4 4 C 1.53005 * 109.46798 * 120.00377 * 2 1 3 5 5 C 1.53006 * 109.46984 * 174.99928 * 4 2 1 6 6 C 1.52994 * 109.46829 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47448 * 304.99616 * 6 5 4 8 8 C 1.53005 * 109.47019 * 184.99752 * 6 5 4 9 9 N 1.46505 * 109.47138 * 64.99948 * 6 5 4 10 10 C 1.34777 * 119.99725 * 204.99517 * 9 6 5 11 11 O 1.21363 * 120.00411 * 0.02562 * 10 9 6 12 12 C 1.49346 * 119.99974 * 179.72256 * 10 9 6 13 13 O 1.21393 * 119.99573 * 0.28167 * 12 10 9 14 14 N 1.34769 * 120.00168 * 180.27495 * 12 10 9 15 15 C 1.39934 * 119.99876 * 179.97438 * 14 12 10 16 16 C 1.40458 * 125.97962 * 359.72455 * 15 14 12 17 17 C 1.35222 * 107.86588 * 179.86153 * 16 15 14 18 18 N 1.34991 * 107.87463 * 0.38856 * 17 16 15 19 19 C 1.46495 * 125.96767 * 179.72643 * 18 17 16 20 20 C 1.50706 * 109.46989 * 125.00664 * 19 18 17 21 21 H 1.08005 * 119.99364 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00407 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99708 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47147 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46758 * 120.00094 * 24 22 20 27 27 H 1.48495 * 109.46959 * 240.00292 * 24 22 20 28 28 N 1.31271 * 125.97792 * 180.02562 * 15 14 12 29 29 H 1.08994 * 109.47109 * 300.00023 * 1 2 3 30 30 H 1.08998 * 109.46780 * 59.99844 * 1 2 3 31 31 H 1.08995 * 109.47397 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47239 * 239.99862 * 2 1 3 33 33 H 1.08998 * 109.47238 * 299.99875 * 3 2 1 34 34 H 1.09002 * 109.47096 * 60.00166 * 3 2 1 35 35 H 1.09001 * 109.46715 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47322 * 54.99728 * 4 2 1 37 37 H 1.09001 * 109.46822 * 294.99095 * 4 2 1 38 38 H 1.09000 * 109.47254 * 59.99759 * 5 4 2 39 39 H 1.09001 * 109.46763 * 299.99812 * 5 4 2 40 40 H 1.08998 * 109.47131 * 180.02562 * 8 6 5 41 41 H 1.08994 * 109.47191 * 300.00181 * 8 6 5 42 42 H 1.09003 * 109.46937 * 60.00155 * 8 6 5 43 43 H 0.97001 * 119.99790 * 25.00258 * 9 6 5 44 44 H 0.97001 * 120.00353 * 0.02562 * 14 12 10 45 45 H 1.07994 * 126.06778 * 359.97438 * 16 15 14 46 46 H 1.07998 * 126.05913 * 180.14363 * 17 16 15 47 47 H 1.09000 * 109.47489 * 245.00246 * 19 18 17 48 48 H 1.08999 * 109.47462 * 5.00654 * 19 18 17 49 49 H 0.96999 * 120.00000 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 3.5648 -0.8312 1.1880 6 6 4.0747 -1.5520 2.4375 7 1 3.7114 -1.0378 3.3273 8 6 5.6048 -1.5520 2.4375 9 7 3.5863 -2.9332 2.4380 10 6 3.4576 -3.6020 3.6011 11 8 3.7459 -3.0599 4.6479 12 6 2.9539 -5.0079 3.6022 13 8 2.6652 -5.5500 2.5551 14 7 2.8200 -5.6748 4.7657 15 6 2.3475 -6.9919 4.7667 16 6 1.9725 -7.7350 3.6353 17 6 1.5771 -8.9582 4.0547 18 7 1.6869 -8.9906 5.3997 19 6 1.3562 -10.1271 6.2629 20 6 2.5495 -10.4745 7.1153 21 1 3.4630 -9.9057 7.0228 22 6 2.4752 -11.5182 8.0131 23 7 1.3626 -12.2104 8.1260 24 14 3.9546 -11.9492 9.0691 25 1 5.0738 -11.0256 8.7536 26 1 3.5939 -11.8174 10.5036 27 1 4.3717 -13.3467 8.7898 28 7 2.1718 -7.7474 5.8258 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 0.0005 36 1 1.6052 -1.7199 1.2951 37 1 1.7516 -0.1584 2.1370 38 1 3.9995 0.1673 1.1421 39 1 3.8531 -1.3941 0.3002 40 1 5.9681 -2.0659 3.3274 41 1 5.9681 -2.0662 1.5477 42 1 5.9681 -0.5244 2.4371 43 1 3.3557 -3.3664 1.6013 44 1 3.0504 -5.2416 5.6024 45 1 1.9975 -7.3912 2.6119 46 1 1.2307 -9.7647 3.4255 47 1 0.5157 -9.8634 6.9049 48 1 1.0876 -10.9852 5.6469 49 1 1.3104 -12.9449 8.7573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086431786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:31 Heat of formation + Delta-G solvation = -12.520892 kcal Electronic energy + Delta-G solvation = -28203.208154 eV Core-core repulsion = 24166.618656 eV Total energy + Delta-G solvation = -4036.589497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11447 -40.28402 -38.78533 -37.70978 -35.87153 -34.86443 -33.37559 -31.95420 -31.04123 -29.46662 -29.41900 -27.57505 -27.05480 -25.49798 -24.25633 -22.92887 -21.71779 -20.99277 -20.45497 -20.30544 -19.69584 -18.29739 -17.11196 -16.62398 -16.52431 -16.07628 -15.95008 -15.46269 -15.21446 -14.74557 -14.68879 -14.44409 -14.35812 -14.07489 -13.75837 -13.56726 -13.11957 -12.95757 -12.92013 -12.59913 -12.49451 -12.41525 -12.30718 -12.03797 -11.89217 -11.81604 -11.55195 -11.35830 -11.07400 -11.03995 -10.94783 -10.86353 -10.80729 -10.54215 -10.28382 -10.03380 -9.57601 -9.53577 -9.50496 -8.65780 -8.23480 -7.58583 -6.26536 -4.31602 1.20799 2.06466 2.66145 3.03387 3.19508 3.21966 3.29686 3.36979 3.66278 3.85203 4.12063 4.30090 4.39725 4.42753 4.46041 4.67841 4.71678 4.85336 5.04430 5.08969 5.17916 5.25653 5.27137 5.29928 5.36214 5.42325 5.43453 5.51645 5.55098 5.64733 5.70203 5.70985 5.80974 5.87908 5.93274 5.99559 6.06631 6.10228 6.31893 6.40814 6.78720 6.91538 7.01673 7.24163 7.36860 7.63304 7.69133 7.84416 7.95481 7.97218 8.53684 8.77415 9.34415 10.82321 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.001891 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.666852 B =14800.001345 C =15612.626038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.119 4.119 5 C -0.129 4.129 6 C 0.139 3.861 7 H 0.093 0.907 8 C -0.166 4.166 9 N -0.694 5.694 10 C 0.517 3.483 11 O -0.516 6.516 12 C 0.511 3.489 13 O -0.500 6.500 14 N -0.598 5.598 15 C 0.250 3.750 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.256 3.744 20 C -0.529 4.529 21 H 0.070 0.930 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.295 5.295 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.413 0.587 44 H 0.423 0.577 45 H 0.161 0.839 46 H 0.170 0.830 47 H 0.047 0.953 48 H 0.059 0.941 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 24.342 -17.561 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.156 4.156 5 C -0.166 4.166 6 C 0.036 3.964 7 H 0.111 0.889 8 C -0.224 4.224 9 N -0.349 5.349 10 C 0.297 3.703 11 O -0.391 6.391 12 C 0.291 3.709 13 O -0.374 6.374 14 N -0.247 5.247 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.139 3.861 20 C -0.568 4.568 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.126 5.126 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.249 0.751 44 H 0.260 0.740 45 H 0.178 0.822 46 H 0.188 0.812 47 H 0.065 0.935 48 H 0.076 0.924 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.262 24.045 -16.107 29.029 hybrid contribution 0.646 -0.399 -0.159 0.776 sum 2.908 23.645 -16.266 28.847 Atomic orbital electron populations 1.21848 0.95196 1.01936 1.01689 1.21124 0.95826 0.96315 0.98315 1.21905 1.01063 0.96025 1.01705 1.21707 0.94778 1.01092 0.98065 1.21991 0.96399 1.01231 0.97011 1.21160 0.94337 0.80925 1.00025 0.88883 1.22203 0.94730 1.02635 1.02874 1.45834 1.65432 1.14466 1.09120 1.19889 0.79086 0.86634 0.84691 1.90789 1.48447 1.68712 1.31136 1.19971 0.79980 0.87011 0.83928 1.90707 1.47498 1.68136 1.31016 1.42006 1.61743 1.10671 1.10248 1.19018 1.02041 0.85447 0.93726 1.21511 1.16303 0.94102 0.99771 1.22584 1.02101 0.99030 0.85968 1.49166 1.45276 1.10064 1.05120 1.19806 0.97902 0.78968 0.89403 1.21295 0.98557 1.15762 1.21167 0.91190 1.24944 0.96747 0.95582 0.96786 1.69924 1.25990 1.20795 1.36580 0.86265 0.82155 0.78197 0.79864 1.19532 1.20663 1.20753 1.77410 1.22603 0.92647 1.19929 0.92709 0.92801 0.92541 0.91196 0.92902 0.92699 0.92470 0.91521 0.91687 0.89792 0.91025 0.91759 0.92137 0.91283 0.75070 0.73967 0.82171 0.81240 0.93533 0.92361 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.10 -0.52 2.92 -90.62 -0.26 -0.78 16 3 C -0.15 -0.71 8.95 37.16 0.33 -0.38 16 4 C -0.12 -0.69 4.57 -26.73 -0.12 -0.81 16 5 C -0.13 -0.64 4.51 -26.73 -0.12 -0.76 16 6 C 0.14 0.99 2.57 -67.93 -0.17 0.82 16 7 H 0.09 0.78 7.58 -51.93 -0.39 0.39 16 8 C -0.17 -1.13 9.48 37.16 0.35 -0.78 16 9 N -0.69 -6.14 4.52 -54.27 -0.25 -6.39 16 10 C 0.52 6.30 7.85 -11.63 -0.09 6.21 16 11 O -0.52 -7.30 16.14 5.49 0.09 -7.22 16 12 C 0.51 7.42 7.85 -11.64 -0.09 7.33 16 13 O -0.50 -7.79 13.60 5.46 0.07 -7.72 16 14 N -0.60 -9.80 5.43 -11.58 -0.06 -9.86 16 15 C 0.25 5.00 8.10 -154.55 -1.25 3.75 16 16 C -0.29 -5.43 9.60 -39.82 -0.38 -5.82 16 17 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.19 3.67 -62.56 -0.23 -7.42 16 19 C 0.26 6.44 6.26 -5.19 -0.03 6.40 16 20 C -0.53 -14.65 9.24 -34.44 -0.32 -14.97 16 21 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 24 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 36 H 0.07 0.45 7.75 -51.93 -0.40 0.05 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.34 6.56 -51.93 -0.34 0.00 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.41 3.21 8.07 -40.82 -0.33 2.88 16 44 H 0.42 6.39 8.29 -40.82 -0.34 6.05 16 45 H 0.16 2.85 5.91 -52.49 -0.31 2.54 16 46 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 47 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 49 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -31.50 408.61 -8.15 -39.64 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.92 Total: 5.14 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.12 Total: 2.13 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.59 Total: -54.49 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.16 Total: -14.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.50 -8.15 -39.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086431786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.122 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds