Wall clock time and date at job start Tue Mar 31 2020 20:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47487 * 2 1 4 4 C 1.53005 * 109.46798 * 120.00377 * 2 1 3 5 5 C 1.53006 * 109.46984 * 174.99928 * 4 2 1 6 6 C 1.52994 * 109.46829 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47448 * 304.99616 * 6 5 4 8 8 C 1.53005 * 109.47019 * 184.99752 * 6 5 4 9 9 N 1.46505 * 109.47138 * 64.99948 * 6 5 4 10 10 C 1.34777 * 119.99725 * 204.99517 * 9 6 5 11 11 O 1.21363 * 120.00411 * 0.02562 * 10 9 6 12 12 C 1.49346 * 119.99974 * 179.72256 * 10 9 6 13 13 O 1.21393 * 119.99573 * 0.28167 * 12 10 9 14 14 N 1.34769 * 120.00168 * 180.27495 * 12 10 9 15 15 C 1.39934 * 119.99876 * 179.97438 * 14 12 10 16 16 C 1.40458 * 125.97962 * 359.72455 * 15 14 12 17 17 C 1.35222 * 107.86588 * 179.86153 * 16 15 14 18 18 N 1.34991 * 107.87463 * 0.38856 * 17 16 15 19 19 C 1.46495 * 125.96767 * 179.72643 * 18 17 16 20 20 C 1.50706 * 109.46989 * 125.00664 * 19 18 17 21 21 H 1.08005 * 119.99364 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00407 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99708 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47147 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46758 * 120.00094 * 24 22 20 27 27 H 1.48495 * 109.46959 * 240.00292 * 24 22 20 28 28 N 1.31271 * 125.97792 * 180.02562 * 15 14 12 29 29 H 1.08994 * 109.47109 * 300.00023 * 1 2 3 30 30 H 1.08998 * 109.46780 * 59.99844 * 1 2 3 31 31 H 1.08995 * 109.47397 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47239 * 239.99862 * 2 1 3 33 33 H 1.08998 * 109.47238 * 299.99875 * 3 2 1 34 34 H 1.09002 * 109.47096 * 60.00166 * 3 2 1 35 35 H 1.09001 * 109.46715 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47322 * 54.99728 * 4 2 1 37 37 H 1.09001 * 109.46822 * 294.99095 * 4 2 1 38 38 H 1.09000 * 109.47254 * 59.99759 * 5 4 2 39 39 H 1.09001 * 109.46763 * 299.99812 * 5 4 2 40 40 H 1.08998 * 109.47131 * 180.02562 * 8 6 5 41 41 H 1.08994 * 109.47191 * 300.00181 * 8 6 5 42 42 H 1.09003 * 109.46937 * 60.00155 * 8 6 5 43 43 H 0.97001 * 119.99790 * 25.00258 * 9 6 5 44 44 H 0.97001 * 120.00353 * 0.02562 * 14 12 10 45 45 H 1.07994 * 126.06778 * 359.97438 * 16 15 14 46 46 H 1.07998 * 126.05913 * 180.14363 * 17 16 15 47 47 H 1.09000 * 109.47489 * 245.00246 * 19 18 17 48 48 H 1.08999 * 109.47462 * 5.00654 * 19 18 17 49 49 H 0.96999 * 120.00000 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 3.5648 -0.8312 1.1880 6 6 4.0747 -1.5520 2.4375 7 1 3.7114 -1.0378 3.3273 8 6 5.6048 -1.5520 2.4375 9 7 3.5863 -2.9332 2.4380 10 6 3.4576 -3.6020 3.6011 11 8 3.7459 -3.0599 4.6479 12 6 2.9539 -5.0079 3.6022 13 8 2.6652 -5.5500 2.5551 14 7 2.8200 -5.6748 4.7657 15 6 2.3475 -6.9919 4.7667 16 6 1.9725 -7.7350 3.6353 17 6 1.5771 -8.9582 4.0547 18 7 1.6869 -8.9906 5.3997 19 6 1.3562 -10.1271 6.2629 20 6 2.5495 -10.4745 7.1153 21 1 3.4630 -9.9057 7.0228 22 6 2.4752 -11.5182 8.0131 23 7 1.3626 -12.2104 8.1260 24 14 3.9546 -11.9492 9.0691 25 1 5.0738 -11.0256 8.7536 26 1 3.5939 -11.8174 10.5036 27 1 4.3717 -13.3467 8.7898 28 7 2.1718 -7.7474 5.8258 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 0.0005 36 1 1.6052 -1.7199 1.2951 37 1 1.7516 -0.1584 2.1370 38 1 3.9995 0.1673 1.1421 39 1 3.8531 -1.3941 0.3002 40 1 5.9681 -2.0659 3.3274 41 1 5.9681 -2.0662 1.5477 42 1 5.9681 -0.5244 2.4371 43 1 3.3557 -3.3664 1.6013 44 1 3.0504 -5.2416 5.6024 45 1 1.9975 -7.3912 2.6119 46 1 1.2307 -9.7647 3.4255 47 1 0.5157 -9.8634 6.9049 48 1 1.0876 -10.9852 5.6469 49 1 1.3104 -12.9449 8.7573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086431786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:30 Heat of formation + Delta-G solvation = -31.747951 kcal Electronic energy + Delta-G solvation = -28204.041901 eV Core-core repulsion = 24166.618656 eV Total energy + Delta-G solvation = -4037.423245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.45379 -41.56732 -39.88604 -38.38131 -36.73201 -36.11749 -35.28653 -32.83905 -32.68307 -31.02424 -29.97612 -28.82909 -27.97066 -26.75734 -25.03835 -24.52639 -22.87945 -22.00358 -21.68438 -21.04756 -20.75562 -19.46122 -18.71274 -18.24994 -17.87980 -17.18870 -16.98066 -16.76840 -16.20601 -16.00636 -15.85332 -15.38278 -15.25949 -15.09109 -14.92193 -14.58836 -14.26008 -14.09313 -13.87740 -13.74978 -13.66211 -13.45137 -13.09141 -13.00612 -12.98183 -12.79647 -12.60552 -12.44378 -12.33145 -12.28276 -12.14142 -11.88122 -11.65027 -11.46007 -11.43132 -11.38699 -11.28619 -10.76751 -10.72644 -10.31602 -9.83921 -9.22113 -8.34581 -6.48002 0.06074 0.88120 1.13866 1.36401 1.38560 1.51133 1.75231 1.85857 2.26667 2.33715 2.61408 2.97797 3.26284 3.62961 3.91023 3.95950 4.01971 4.19373 4.21964 4.24478 4.36710 4.56657 4.63099 4.66986 4.78493 4.83368 4.84155 4.85508 4.88061 4.90940 4.94388 4.98193 5.02157 5.03613 5.10348 5.18625 5.26406 5.29676 5.36248 5.39570 5.55578 5.55647 5.58930 5.74832 5.78351 5.87101 6.18172 6.25378 6.58044 6.63773 6.82163 6.96225 7.22062 8.73474 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.001891 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.666852 B =14800.001345 C =15612.626038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.118 4.118 5 C -0.119 4.119 6 C 0.137 3.863 7 H 0.081 0.919 8 C -0.163 4.163 9 N -0.675 5.675 10 C 0.524 3.476 11 O -0.538 6.538 12 C 0.515 3.485 13 O -0.507 6.507 14 N -0.602 5.602 15 C 0.258 3.742 16 C -0.288 4.288 17 C 0.061 3.939 18 N -0.339 5.339 19 C 0.270 3.730 20 C -0.548 4.548 21 H 0.051 0.949 22 C 0.020 3.980 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.274 1.274 27 H -0.269 1.269 28 N -0.342 5.342 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.420 0.580 44 H 0.427 0.573 45 H 0.177 0.823 46 H 0.207 0.793 47 H 0.023 0.977 48 H 0.064 0.936 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 25.424 -19.308 32.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.156 4.156 5 C -0.156 4.156 6 C 0.034 3.966 7 H 0.099 0.901 8 C -0.221 4.221 9 N -0.329 5.329 10 C 0.303 3.697 11 O -0.415 6.415 12 C 0.296 3.704 13 O -0.380 6.380 14 N -0.251 5.251 15 C 0.004 3.996 16 C -0.318 4.318 17 C -0.088 4.088 18 N -0.121 5.121 19 C 0.152 3.848 20 C -0.587 4.587 21 H 0.070 0.930 22 C -0.181 4.181 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.199 1.199 27 H -0.194 1.194 28 N -0.174 5.174 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.258 0.742 44 H 0.265 0.735 45 H 0.194 0.806 46 H 0.224 0.776 47 H 0.041 0.959 48 H 0.081 0.919 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.358 25.160 -17.909 31.065 hybrid contribution 0.283 -0.609 0.255 0.718 sum 3.641 24.550 -17.654 30.457 Atomic orbital electron populations 1.21867 0.95792 1.01496 1.01717 1.21109 0.95346 0.96792 0.98125 1.21898 1.01674 0.95397 1.01630 1.21683 0.95438 1.00367 0.98080 1.21956 0.95592 1.01971 0.96114 1.21353 0.94806 0.79586 1.00825 0.90057 1.22183 0.94028 1.03772 1.02142 1.45880 1.63739 1.14971 1.08279 1.19452 0.79340 0.85523 0.85382 1.90792 1.49891 1.68739 1.32059 1.20451 0.79032 0.87792 0.83117 1.90683 1.47586 1.68623 1.31144 1.42141 1.62062 1.09602 1.11301 1.19342 1.00410 0.86429 0.93435 1.21753 1.16085 0.93890 1.00098 1.23256 1.00537 1.00175 0.84834 1.48907 1.47306 1.09838 1.06090 1.19398 0.96220 0.79871 0.89317 1.21431 0.98760 1.16056 1.22411 0.93048 1.25709 0.99383 0.95301 0.97692 1.69991 1.27458 1.21148 1.37167 0.85314 0.78656 0.78215 0.78309 1.20091 1.19938 1.19360 1.77322 1.24884 0.93385 1.21763 0.93160 0.92327 0.93215 0.90693 0.92701 0.93104 0.91474 0.92684 0.92478 0.88056 0.89732 0.94106 0.91175 0.89298 0.74164 0.73470 0.80624 0.77591 0.95913 0.91857 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 71.98 0.66 -0.94 16 2 C -0.10 -0.85 2.92 -10.79 -0.03 -0.88 16 3 C -0.15 -1.10 8.95 71.98 0.64 -0.46 16 4 C -0.12 -1.18 4.57 30.60 0.14 -1.04 16 5 C -0.12 -0.86 4.51 30.59 0.14 -0.73 16 6 C 0.14 1.70 2.57 44.99 0.12 1.82 16 7 H 0.08 1.27 7.58 -2.39 -0.02 1.25 16 8 C -0.16 -1.88 9.48 71.98 0.68 -1.20 16 9 N -0.68 -10.93 4.52 -443.95 -2.01 -12.94 16 10 C 0.52 12.36 7.85 87.24 0.68 13.05 16 11 O -0.54 -15.07 16.14 -3.29 -0.05 -15.13 16 12 C 0.52 14.57 7.85 87.24 0.69 15.25 16 13 O -0.51 -15.08 13.60 -3.38 -0.05 -15.12 16 14 N -0.60 -19.71 5.43 -308.89 -1.68 -21.39 16 15 C 0.26 10.32 8.10 133.40 1.08 11.40 16 16 C -0.29 -10.65 9.60 22.12 0.21 -10.44 16 17 C 0.06 2.28 11.43 83.51 0.95 3.24 16 18 N -0.34 -15.74 3.67 -351.84 -1.29 -17.03 16 19 C 0.27 13.91 6.26 85.64 0.54 14.45 16 20 C -0.55 -30.98 9.24 25.60 0.24 -30.75 16 21 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 22 C 0.02 1.09 5.46 84.65 0.46 1.55 16 23 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 24 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 N -0.34 -16.12 12.42 -54.54 -0.68 -16.79 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 0.36 6.56 -2.39 -0.02 0.35 16 36 H 0.05 0.68 7.75 -2.39 -0.02 0.66 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.47 6.56 -2.39 -0.02 0.45 16 39 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.42 5.68 8.07 -92.71 -0.75 4.93 16 44 H 0.43 13.13 8.29 -92.71 -0.77 12.36 16 45 H 0.18 5.93 5.91 -2.91 -0.02 5.91 16 46 H 0.21 5.93 8.06 -2.91 -0.02 5.90 16 47 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 3.14 8.07 -2.39 -0.02 3.12 16 49 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -68.14 408.61 3.21 -64.93 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -0.55 Total: 24.84 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 7.20 Total: 14.32 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.37 Total: -119.75 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.10 Total: -30.25 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.14 3.21 -64.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086431786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.182 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds