Wall clock time and date at job start Tue Mar 31 2020 19:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 117.00133 * 2 1 4 4 C 1.38662 * 120.05931 * 0.02562 * 3 2 1 5 5 C 1.38186 * 119.96712 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.09796 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.94020 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47260 * 89.99964 * 7 6 5 9 9 H 1.08994 * 109.46673 * 55.00023 * 8 7 6 10 10 C 1.52995 * 109.47056 * 295.00383 * 8 7 6 11 11 C 1.52993 * 109.46928 * 174.99955 * 8 7 6 12 12 N 1.46896 * 109.47572 * 294.91616 * 11 8 7 13 13 C 1.46894 * 111.00406 * 289.23901 * 12 11 8 14 14 C 1.53233 * 109.34201 * 172.74510 * 13 12 11 15 15 N 1.47075 * 108.52438 * 53.83197 * 14 13 12 16 16 C 1.36931 * 120.88607 * 128.79028 * 15 14 13 17 17 H 1.07996 * 120.00362 * 203.04420 * 16 15 14 18 18 C 1.38811 * 119.99760 * 23.04934 * 16 15 14 19 19 N 1.31618 * 120.00312 * 31.27299 * 18 16 15 20 20 Si 1.86804 * 120.00155 * 211.27161 * 18 16 15 21 21 H 1.48501 * 109.46757 * 94.98779 * 20 18 16 22 22 H 1.48500 * 109.47454 * 214.99191 * 20 18 16 23 23 H 1.48505 * 109.46935 * 334.99467 * 20 18 16 24 24 C 1.47079 * 118.23302 * 308.81617 * 15 14 13 25 25 C 1.46907 * 111.00067 * 164.93621 * 12 11 8 26 26 C 1.38257 * 120.12329 * 359.74955 * 6 5 4 27 27 C 1.38332 * 120.03188 * 0.50552 * 26 6 5 28 28 F 1.35099 * 120.05040 * 179.77110 * 27 26 6 29 29 H 1.08995 * 109.46934 * 299.99714 * 1 2 3 30 30 H 1.09003 * 109.46902 * 60.00269 * 1 2 3 31 31 H 1.09003 * 109.46844 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.01951 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.95060 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47269 * 209.99754 * 7 6 5 35 35 H 1.09002 * 109.47098 * 330.00138 * 7 6 5 36 36 H 1.09003 * 109.46924 * 299.30812 * 10 8 7 37 37 H 1.09004 * 109.47498 * 59.30908 * 10 8 7 38 38 H 1.09000 * 109.47388 * 179.30846 * 10 8 7 39 39 H 1.09000 * 109.47284 * 54.92162 * 11 8 7 40 40 H 1.09001 * 109.46794 * 174.91765 * 11 8 7 41 41 H 1.09003 * 109.49234 * 292.70467 * 13 12 11 42 42 H 1.09002 * 109.49376 * 52.77953 * 13 12 11 43 43 H 1.08999 * 109.62964 * 294.11678 * 14 13 12 44 44 H 1.09011 * 109.62707 * 173.54022 * 14 13 12 45 45 H 0.96996 * 120.00326 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.63068 * 291.47220 * 24 15 14 47 47 H 1.09004 * 109.79019 * 170.98994 * 24 15 14 48 48 H 1.09006 * 109.48672 * 307.21437 * 25 12 11 49 49 H 1.08997 * 109.48914 * 67.26834 * 25 12 11 50 50 H 1.08007 * 119.98483 * 180.27888 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0011 6 6 3.3023 3.6778 0.0016 7 6 3.9849 5.0212 0.0016 8 6 4.2154 5.4763 1.4442 9 1 4.7688 4.7076 1.9835 10 6 2.8663 5.7077 2.1276 11 6 5.0182 6.7787 1.4460 12 7 6.3589 6.5283 0.9004 13 6 7.1677 5.7342 1.8348 14 6 8.4857 5.3422 1.1586 15 7 9.1347 6.5630 0.6568 16 6 10.4419 6.8384 0.9572 17 1 10.8015 7.8561 0.9208 18 6 11.3049 5.8095 1.3085 19 7 11.1358 4.6067 0.8017 20 14 12.7066 6.1320 2.5006 21 1 12.2804 5.7679 3.8757 22 1 13.8836 5.3133 2.1139 23 1 13.0698 7.5714 2.4597 24 6 8.3420 7.4803 -0.1758 25 6 7.0296 7.7883 0.5529 26 6 4.0579 2.5200 0.0068 27 6 3.4333 1.2857 0.0010 28 9 4.1713 0.1540 0.0014 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2137 2.3201 0.0005 33 1 1.3341 4.5116 0.0019 34 1 4.9432 4.9419 -0.5118 35 1 3.3563 5.7482 -0.5126 36 1 2.3180 6.4850 1.5954 37 1 2.2894 4.7829 2.1154 38 1 3.0302 6.0200 3.1590 39 1 4.5085 7.5205 0.8312 40 1 5.1050 7.1505 2.4669 41 1 7.3780 6.3248 2.7265 42 1 6.6208 4.8340 2.1150 43 1 8.2840 4.6666 0.3274 44 1 9.1371 4.8524 1.8825 45 1 11.7390 3.8878 1.0469 46 1 8.1264 7.0103 -1.1354 47 1 8.8966 8.4047 -0.3374 48 1 6.3824 8.3776 -0.0967 49 1 7.2413 8.3504 1.4624 50 1 5.1363 2.5792 0.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185244588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:07 Heat of formation + Delta-G solvation = -33.783432 kcal Electronic energy + Delta-G solvation = -29578.125202 eV Core-core repulsion = 25520.693730 eV Total energy + Delta-G solvation = -4057.431472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.77658 -40.28346 -38.75966 -37.83314 -35.65653 -33.60699 -31.33957 -30.93830 -30.38571 -29.95779 -27.96056 -27.21345 -26.13536 -24.42636 -22.94239 -22.69413 -22.38741 -21.56335 -19.71698 -19.05778 -18.46702 -17.03021 -16.89060 -16.74588 -16.32008 -15.45107 -15.16872 -14.98380 -14.78791 -14.68854 -14.53865 -14.38023 -13.96309 -13.81617 -13.56944 -13.30835 -13.08441 -13.04135 -12.68098 -12.42191 -12.37001 -12.16282 -11.83193 -11.79816 -11.47652 -11.37183 -11.28299 -11.23240 -10.79060 -10.75522 -10.69144 -10.57837 -10.33003 -10.25838 -10.03633 -9.67762 -9.55241 -9.03541 -8.40942 -8.21868 -7.77647 -6.74340 -5.81426 -3.08805 1.00253 1.10387 2.90931 3.40421 3.40899 3.49528 3.50392 4.10753 4.36046 4.49206 4.54935 4.59840 4.72546 4.80177 4.92294 5.02017 5.11367 5.12638 5.18971 5.26080 5.30761 5.41438 5.44821 5.57257 5.68079 5.71678 5.76136 5.83243 5.88935 5.93428 5.94498 5.97705 6.06629 6.11935 6.17480 6.25111 6.25672 6.33784 6.39647 6.50676 6.58921 6.61426 6.68472 6.93731 7.07503 7.18364 7.53469 7.64843 7.71232 7.86691 8.39643 9.19228 9.87219 10.45477 11.27257 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.002668 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.800165 B =10490.470530 C =11802.576971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.082 3.918 4 C -0.183 4.183 5 C -0.090 4.090 6 C -0.077 4.077 7 C -0.068 4.068 8 C -0.081 4.081 9 H 0.074 0.926 10 C -0.149 4.149 11 C 0.059 3.941 12 N -0.531 5.531 13 C 0.036 3.964 14 C 0.178 3.822 15 N -0.593 5.593 16 C -0.260 4.260 17 H 0.067 0.933 18 C 0.007 3.993 19 N -0.885 5.885 20 Si 0.885 3.115 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.279 1.279 24 C 0.149 3.851 25 C 0.045 3.955 26 C -0.110 4.110 27 C 0.073 3.927 28 F -0.133 7.133 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.076 0.924 45 H 0.254 0.746 46 H 0.025 0.975 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.026 0.974 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.810 -2.603 -0.553 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.036 3.964 4 C -0.201 4.201 5 C -0.108 4.108 6 C -0.077 4.077 7 C -0.105 4.105 8 C -0.100 4.100 9 H 0.092 0.908 10 C -0.207 4.207 11 C -0.070 4.070 12 N -0.255 5.255 13 C -0.093 4.093 14 C 0.052 3.948 15 N -0.317 5.317 16 C -0.389 4.389 17 H 0.085 0.915 18 C -0.193 4.193 19 N -0.528 5.528 20 Si 0.715 3.285 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.204 1.204 24 C 0.023 3.977 25 C -0.084 4.084 26 C -0.129 4.129 27 C 0.053 3.947 28 F -0.112 7.112 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.045 0.955 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.625 -3.249 -0.981 24.858 hybrid contribution 0.654 0.393 1.452 1.641 sum -23.971 -2.856 0.472 24.145 Atomic orbital electron populations 1.23075 0.78225 1.04066 1.01351 1.86133 1.21470 1.26031 1.89007 1.18983 0.90817 0.85520 1.01052 1.21074 0.99962 0.91551 1.07544 1.20926 0.94091 0.96984 0.98833 1.19822 0.93078 0.95448 0.99348 1.20592 1.01398 0.91293 0.97202 1.21109 0.95548 0.97781 0.95549 0.90791 1.21904 0.97081 1.01538 1.00173 1.22141 0.90767 0.96362 0.97710 1.61927 1.01679 1.18773 1.43164 1.22870 0.96462 0.96312 0.93689 1.20763 0.88927 0.88382 0.96747 1.44177 1.08682 1.22408 1.56406 1.19118 0.85768 0.92432 1.41611 0.91497 1.24802 0.97178 0.96279 1.01017 1.70241 1.39262 1.02326 1.40991 0.86525 0.81819 0.77715 0.82442 1.21557 1.21944 1.20391 1.20951 0.89762 0.94160 0.92855 1.22610 0.97041 0.89969 0.98821 1.21094 1.01676 0.89593 1.00524 1.17016 0.85854 0.83126 1.08736 1.91507 1.76437 1.48998 1.94222 0.92570 0.92565 0.88137 0.84842 0.85223 0.88745 0.91270 0.92835 0.92336 0.93011 0.91482 0.95390 0.95745 0.91966 0.95505 0.90576 0.93669 0.95736 0.92708 0.92093 0.95540 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.56 10.36 -19.61 -0.20 -3.77 16 3 C 0.08 0.97 6.69 -39.18 -0.26 0.71 16 4 C -0.18 -1.70 9.04 -39.44 -0.36 -2.06 16 5 C -0.09 -0.84 7.93 -39.59 -0.31 -1.15 16 6 C -0.08 -0.85 4.71 -104.61 -0.49 -1.34 16 7 C -0.07 -0.75 4.78 -27.88 -0.13 -0.89 16 8 C -0.08 -0.93 2.38 -90.62 -0.22 -1.14 16 9 H 0.07 0.97 6.42 -51.93 -0.33 0.63 16 10 C -0.15 -1.39 8.78 37.16 0.33 -1.06 16 11 C 0.06 0.77 4.36 -3.83 -0.02 0.75 16 12 N -0.53 -8.81 3.97 -234.33 -0.93 -9.74 16 13 C 0.04 0.68 5.47 -3.71 -0.02 0.66 16 14 C 0.18 4.22 5.58 -3.61 -0.02 4.20 16 15 N -0.59 -14.95 3.04 -172.02 -0.52 -15.48 16 16 C -0.26 -7.22 9.55 -15.06 -0.14 -7.36 16 17 H 0.07 1.84 7.98 -52.49 -0.42 1.42 16 18 C 0.01 0.20 4.55 -17.43 -0.08 0.12 16 19 N -0.89 -25.98 11.90 55.49 0.66 -25.32 16 20 Si 0.89 21.74 29.65 -169.99 -5.04 16.70 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.15 3.14 6.69 -3.60 -0.02 3.11 16 25 C 0.05 0.78 5.61 -3.70 -0.02 0.76 16 26 C -0.11 -1.39 9.67 -39.54 -0.38 -1.78 16 27 C 0.07 0.98 7.31 -39.30 -0.29 0.69 16 28 F -0.13 -2.02 17.11 2.25 0.04 -1.99 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 33 H 0.13 0.93 8.03 -52.48 -0.42 0.51 16 34 H 0.09 1.27 7.57 -51.93 -0.39 0.88 16 35 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.53 6.22 -51.93 -0.32 0.21 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 40 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.07 6.33 -51.93 -0.33 0.74 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 2.01 6.32 -51.92 -0.33 1.68 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 48 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -31.23 394.04 -9.77 -41.00 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -8.26 Total: -2.75 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.45 Total: -4.60 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.79 Total: -50.54 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.04 Total: 16.70 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.23 -9.77 -41.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185244588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.216 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds