Wall clock time and date at job start Tue Mar 31 2020 19:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 117.00133 * 2 1 4 4 C 1.38662 * 120.05931 * 0.02562 * 3 2 1 5 5 C 1.38186 * 119.96712 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.09796 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.94020 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47260 * 89.99964 * 7 6 5 9 9 H 1.08994 * 109.46673 * 55.00023 * 8 7 6 10 10 C 1.52995 * 109.47056 * 295.00383 * 8 7 6 11 11 C 1.52993 * 109.46928 * 174.99955 * 8 7 6 12 12 N 1.46896 * 109.47572 * 294.91616 * 11 8 7 13 13 C 1.46894 * 111.00406 * 289.23901 * 12 11 8 14 14 C 1.53233 * 109.34201 * 172.74510 * 13 12 11 15 15 N 1.47075 * 108.52438 * 53.83197 * 14 13 12 16 16 C 1.36931 * 120.88607 * 128.79028 * 15 14 13 17 17 H 1.07996 * 120.00362 * 203.04420 * 16 15 14 18 18 C 1.38811 * 119.99760 * 23.04934 * 16 15 14 19 19 N 1.31618 * 120.00312 * 31.27299 * 18 16 15 20 20 Si 1.86804 * 120.00155 * 211.27161 * 18 16 15 21 21 H 1.48501 * 109.46757 * 94.98779 * 20 18 16 22 22 H 1.48500 * 109.47454 * 214.99191 * 20 18 16 23 23 H 1.48505 * 109.46935 * 334.99467 * 20 18 16 24 24 C 1.47079 * 118.23302 * 308.81617 * 15 14 13 25 25 C 1.46907 * 111.00067 * 164.93621 * 12 11 8 26 26 C 1.38257 * 120.12329 * 359.74955 * 6 5 4 27 27 C 1.38332 * 120.03188 * 0.50552 * 26 6 5 28 28 F 1.35099 * 120.05040 * 179.77110 * 27 26 6 29 29 H 1.08995 * 109.46934 * 299.99714 * 1 2 3 30 30 H 1.09003 * 109.46902 * 60.00269 * 1 2 3 31 31 H 1.09003 * 109.46844 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.01951 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.95060 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47269 * 209.99754 * 7 6 5 35 35 H 1.09002 * 109.47098 * 330.00138 * 7 6 5 36 36 H 1.09003 * 109.46924 * 299.30812 * 10 8 7 37 37 H 1.09004 * 109.47498 * 59.30908 * 10 8 7 38 38 H 1.09000 * 109.47388 * 179.30846 * 10 8 7 39 39 H 1.09000 * 109.47284 * 54.92162 * 11 8 7 40 40 H 1.09001 * 109.46794 * 174.91765 * 11 8 7 41 41 H 1.09003 * 109.49234 * 292.70467 * 13 12 11 42 42 H 1.09002 * 109.49376 * 52.77953 * 13 12 11 43 43 H 1.08999 * 109.62964 * 294.11678 * 14 13 12 44 44 H 1.09011 * 109.62707 * 173.54022 * 14 13 12 45 45 H 0.96996 * 120.00326 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.63068 * 291.47220 * 24 15 14 47 47 H 1.09004 * 109.79019 * 170.98994 * 24 15 14 48 48 H 1.09006 * 109.48672 * 307.21437 * 25 12 11 49 49 H 1.08997 * 109.48914 * 67.26834 * 25 12 11 50 50 H 1.08007 * 119.98483 * 180.27888 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0011 6 6 3.3023 3.6778 0.0016 7 6 3.9849 5.0212 0.0016 8 6 4.2154 5.4763 1.4442 9 1 4.7688 4.7076 1.9835 10 6 2.8663 5.7077 2.1276 11 6 5.0182 6.7787 1.4460 12 7 6.3589 6.5283 0.9004 13 6 7.1677 5.7342 1.8348 14 6 8.4857 5.3422 1.1586 15 7 9.1347 6.5630 0.6568 16 6 10.4419 6.8384 0.9572 17 1 10.8015 7.8561 0.9208 18 6 11.3049 5.8095 1.3085 19 7 11.1358 4.6067 0.8017 20 14 12.7066 6.1320 2.5006 21 1 12.2804 5.7679 3.8757 22 1 13.8836 5.3133 2.1139 23 1 13.0698 7.5714 2.4597 24 6 8.3420 7.4803 -0.1758 25 6 7.0296 7.7883 0.5529 26 6 4.0579 2.5200 0.0068 27 6 3.4333 1.2857 0.0010 28 9 4.1713 0.1540 0.0014 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2137 2.3201 0.0005 33 1 1.3341 4.5116 0.0019 34 1 4.9432 4.9419 -0.5118 35 1 3.3563 5.7482 -0.5126 36 1 2.3180 6.4850 1.5954 37 1 2.2894 4.7829 2.1154 38 1 3.0302 6.0200 3.1590 39 1 4.5085 7.5205 0.8312 40 1 5.1050 7.1505 2.4669 41 1 7.3780 6.3248 2.7265 42 1 6.6208 4.8340 2.1150 43 1 8.2840 4.6666 0.3274 44 1 9.1371 4.8524 1.8825 45 1 11.7390 3.8878 1.0469 46 1 8.1264 7.0103 -1.1354 47 1 8.8966 8.4047 -0.3374 48 1 6.3824 8.3776 -0.0967 49 1 7.2413 8.3504 1.4624 50 1 5.1363 2.5792 0.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185244588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:06 Heat of formation + Delta-G solvation = -51.587752 kcal Electronic energy + Delta-G solvation = -29578.897255 eV Core-core repulsion = 25520.693730 eV Total energy + Delta-G solvation = -4058.203525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.84070 -41.08959 -39.97573 -38.90301 -36.97770 -35.12167 -33.09037 -31.79142 -31.66035 -31.36708 -28.81689 -28.49407 -27.01955 -25.93174 -24.38085 -24.03242 -23.68249 -22.49153 -20.90928 -20.55706 -19.25163 -18.70739 -17.87724 -17.81850 -17.14701 -17.02508 -16.35679 -16.05616 -16.00293 -15.81319 -15.71386 -15.41199 -15.31745 -15.15610 -15.03704 -14.85133 -14.47623 -14.17173 -13.74177 -13.51693 -13.22351 -13.11589 -13.09335 -12.88847 -12.85939 -12.60173 -12.58386 -12.34040 -12.15122 -12.08140 -12.02749 -11.94749 -11.75333 -11.63059 -11.50865 -11.36657 -11.12223 -10.52224 -9.90097 -9.23023 -9.02684 -8.76621 -7.94236 -5.24867 0.14677 0.26098 1.43272 1.46542 1.55483 2.22982 2.50088 2.57183 3.05348 3.16837 3.25127 3.67156 3.71019 3.78817 3.99803 4.14188 4.24351 4.27527 4.31911 4.36791 4.39745 4.40683 4.42138 4.54550 4.56827 4.64820 4.68692 4.72781 4.75116 4.82847 4.86829 4.91865 4.96411 5.02556 5.04252 5.09200 5.18032 5.20108 5.21991 5.31936 5.32766 5.46280 5.52903 5.57832 5.64933 5.68667 5.77201 6.22282 6.31986 6.33262 6.37577 7.08606 7.83352 8.37695 9.12666 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.002668 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.800165 B =10490.470530 C =11802.576971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.078 3.922 4 C -0.172 4.172 5 C -0.075 4.075 6 C -0.081 4.081 7 C -0.060 4.060 8 C -0.077 4.077 9 H 0.049 0.951 10 C -0.142 4.142 11 C 0.062 3.938 12 N -0.536 5.536 13 C 0.056 3.944 14 C 0.186 3.814 15 N -0.612 5.612 16 C -0.270 4.270 17 H 0.068 0.932 18 C -0.045 4.045 19 N -0.923 5.923 20 Si 0.952 3.048 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.143 3.857 25 C 0.057 3.943 26 C -0.126 4.126 27 C 0.033 3.967 28 F -0.155 7.155 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.028 0.972 41 H 0.016 0.984 42 H 0.076 0.924 43 H -0.001 1.001 44 H 0.042 0.958 45 H 0.250 0.750 46 H 0.015 0.985 47 H 0.058 0.942 48 H 0.099 0.901 49 H 0.021 0.979 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.568 -0.389 -0.092 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.032 3.968 4 C -0.190 4.190 5 C -0.093 4.093 6 C -0.081 4.081 7 C -0.097 4.097 8 C -0.096 4.096 9 H 0.068 0.932 10 C -0.200 4.200 11 C -0.066 4.066 12 N -0.260 5.260 13 C -0.074 4.074 14 C 0.060 3.940 15 N -0.336 5.336 16 C -0.399 4.399 17 H 0.085 0.915 18 C -0.242 4.242 19 N -0.568 5.568 20 Si 0.780 3.220 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.191 1.191 24 C 0.018 3.982 25 C -0.073 4.073 26 C -0.144 4.144 27 C 0.014 3.986 28 F -0.134 7.134 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.034 0.966 42 H 0.095 0.905 43 H 0.017 0.983 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.033 0.967 47 H 0.077 0.923 48 H 0.117 0.883 49 H 0.040 0.960 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.416 -1.006 -0.521 28.439 hybrid contribution 1.734 -0.304 1.224 2.144 sum -26.682 -1.310 0.704 26.724 Atomic orbital electron populations 1.23430 0.75633 1.05773 1.02872 1.86104 1.24229 1.26204 1.88920 1.19146 0.90230 0.86766 1.00703 1.21466 1.01544 0.90383 1.05633 1.21290 0.93180 0.98359 0.96486 1.19866 0.94061 0.94494 0.99719 1.20499 1.00441 0.91918 0.96878 1.21060 0.96564 0.96221 0.95755 0.93220 1.21846 0.95507 1.02526 1.00100 1.22245 0.88500 0.97844 0.97993 1.61875 1.02888 1.18431 1.42854 1.22484 0.94544 0.97334 0.93015 1.20534 0.90679 0.87683 0.95109 1.44480 1.08534 1.23177 1.57433 1.19440 0.86971 0.92439 1.41084 0.91466 1.25561 1.00002 0.96196 1.02427 1.70354 1.40710 1.03206 1.42486 0.85478 0.78709 0.77924 0.79846 1.21497 1.22282 1.19107 1.21137 0.91397 0.93237 0.92469 1.22454 0.95671 0.90360 0.98765 1.21046 1.01027 0.90489 1.01886 1.17395 0.87097 0.82706 1.11414 1.91433 1.77167 1.50096 1.94696 0.90940 0.90933 0.86619 0.81261 0.81676 0.91737 0.88805 0.90597 0.91864 0.93062 0.88931 0.95329 0.96584 0.90539 0.98316 0.93995 0.94082 0.96663 0.92327 0.88323 0.96049 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.49 10.36 -93.08 -0.96 -8.45 16 3 C 0.08 1.77 6.69 22.53 0.15 1.92 16 4 C -0.17 -2.63 9.04 22.36 0.20 -2.43 16 5 C -0.08 -1.12 7.93 22.26 0.18 -0.94 16 6 C -0.08 -1.68 4.71 -19.86 -0.09 -1.77 16 7 C -0.06 -1.22 4.78 29.85 0.14 -1.08 16 8 C -0.08 -1.59 2.38 -10.79 -0.03 -1.62 16 9 H 0.05 1.27 6.42 -2.39 -0.02 1.26 16 10 C -0.14 -2.08 8.78 71.98 0.63 -1.44 16 11 C 0.06 1.43 4.36 86.30 0.38 1.81 16 12 N -0.54 -17.18 3.97 -895.28 -3.55 -20.73 16 13 C 0.06 2.14 5.47 86.38 0.47 2.62 16 14 C 0.19 9.29 5.58 86.35 0.48 9.78 16 15 N -0.61 -31.73 3.04 -698.15 -2.13 -33.86 16 16 C -0.27 -15.29 9.55 84.03 0.80 -14.48 16 17 H 0.07 3.73 7.98 -2.91 -0.02 3.70 16 18 C -0.05 -2.60 4.55 84.86 0.39 -2.21 16 19 N -0.92 -56.56 11.90 21.65 0.26 -56.30 16 20 Si 0.95 45.85 29.65 68.60 2.03 47.89 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 C 0.14 6.01 6.69 86.35 0.58 6.59 16 25 C 0.06 1.86 5.61 86.38 0.48 2.34 16 26 C -0.13 -3.36 9.67 22.30 0.22 -3.15 16 27 C 0.03 0.95 7.31 22.45 0.16 1.12 16 28 F -0.15 -5.16 17.11 44.97 0.77 -4.39 16 29 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 30 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 31 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.17 1.34 6.30 -2.91 -0.02 1.32 16 33 H 0.17 1.34 8.03 -2.91 -0.02 1.31 16 34 H 0.06 1.72 7.57 -2.39 -0.02 1.70 16 35 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.88 6.22 -2.38 -0.01 0.87 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.74 7.87 -2.39 -0.02 1.72 16 40 H 0.03 0.69 8.07 -2.39 -0.02 0.67 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.08 2.71 6.33 -2.39 -0.02 2.69 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.04 2.35 6.32 -2.38 -0.02 2.33 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.06 2.37 7.94 -2.39 -0.02 2.35 16 48 H 0.10 2.54 7.94 -2.38 -0.02 2.52 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -72.41 394.04 3.59 -68.82 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.92 Total: 8.70 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 6.26 Total: -1.67 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -5.42 Total: -110.89 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.96 Total: -8.45 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.77 Total: -4.39 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.89 kcal Total: -72.41 3.59 -68.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185244588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.229 kcal (2) G-P(sol) polarization free energy of solvation -72.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds