Wall clock time and date at job start Tue Mar 31 2020 20:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 C 1.53003 * 109.46945 * 120.00008 * 2 1 3 5 5 C 1.53000 * 109.47089 * 173.22637 * 4 2 1 6 6 H 1.09004 * 109.47329 * 53.46416 * 5 4 2 7 7 C 1.53001 * 109.47469 * 173.46272 * 5 4 2 8 8 N 1.46499 * 109.46964 * 293.46359 * 5 4 2 9 9 N 1.40074 * 126.09698 * 300.02289 * 8 5 4 10 10 C 1.30845 * 108.42439 * 179.73544 * 9 8 5 11 11 C 1.39689 * 108.45824 * 0.02562 * 10 9 8 12 12 C 1.35856 * 126.09977 * 119.71359 * 8 5 4 13 13 N 1.39195 * 126.27177 * 0.24477 * 12 8 5 14 14 C 1.34777 * 120.00164 * 180.02562 * 13 12 8 15 15 O 1.21393 * 119.99486 * 359.97438 * 14 13 12 16 16 C 1.49304 * 120.00141 * 179.97438 * 14 13 12 17 17 O 1.21364 * 119.99747 * 355.34864 * 16 14 13 18 18 N 1.34773 * 119.99772 * 175.34864 * 16 14 13 19 19 C 1.46493 * 120.00173 * 1.64551 * 18 16 14 20 20 C 1.46504 * 119.99687 * 181.64498 * 18 16 14 21 21 C 1.50698 * 109.47110 * 89.99860 * 20 18 16 22 22 H 1.08000 * 120.00088 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00056 * 179.97438 * 21 20 18 24 24 N 1.31516 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46992 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47148 * 120.00058 * 25 23 21 28 28 H 1.48500 * 109.46907 * 240.00104 * 25 23 21 29 29 H 1.09005 * 109.46914 * 299.99991 * 1 2 3 30 30 H 1.08995 * 109.46651 * 60.00417 * 1 2 3 31 31 H 1.09003 * 109.46867 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47254 * 239.99562 * 2 1 3 33 33 H 1.09000 * 109.47350 * 305.37904 * 3 2 1 34 34 H 1.09002 * 109.47303 * 65.37834 * 3 2 1 35 35 H 1.09005 * 109.46935 * 185.38009 * 3 2 1 36 36 H 1.09001 * 109.47615 * 53.22145 * 4 2 1 37 37 H 1.09005 * 109.46991 * 293.22377 * 4 2 1 38 38 H 1.08994 * 109.47511 * 175.02015 * 7 5 4 39 39 H 1.09005 * 109.46952 * 295.02683 * 7 5 4 40 40 H 1.09008 * 109.46730 * 55.01909 * 7 5 4 41 41 H 1.07997 * 125.77430 * 179.97438 * 10 9 8 42 42 H 1.08000 * 126.07190 * 179.97438 * 11 10 9 43 43 H 0.97002 * 120.00015 * 359.97438 * 13 12 8 44 44 H 1.08995 * 109.47524 * 83.70174 * 19 18 16 45 45 H 1.09001 * 109.46999 * 203.69911 * 19 18 16 46 46 H 1.09005 * 109.47277 * 323.69744 * 19 18 16 47 47 H 1.08997 * 109.46977 * 209.99726 * 20 18 16 48 48 H 1.09002 * 109.47376 * 330.00164 * 20 18 16 49 49 H 0.97000 * 120.00028 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5605 -0.8703 1.1671 6 1 4.0121 0.1055 0.9881 7 6 4.0888 -1.4427 2.4840 8 7 3.9037 -1.7764 0.0683 9 7 3.5055 -3.1138 -0.0536 10 6 4.0004 -3.5929 -1.1660 11 6 4.7322 -2.5832 -1.7956 12 6 4.6600 -1.4676 -1.0173 13 7 5.2525 -0.2368 -1.2850 14 6 5.9803 -0.0691 -2.4069 15 8 6.1193 -0.9916 -3.1837 16 6 6.6154 1.2512 -2.6944 17 8 6.4075 2.1967 -1.9624 18 7 7.4195 1.3929 -3.7666 19 6 7.6417 0.2615 -4.6702 20 6 8.0714 2.6786 -4.0285 21 6 9.4094 2.7136 -3.3360 22 1 9.7412 1.8631 -2.7590 23 6 10.2104 3.8310 -3.4400 24 7 9.8066 4.8665 -4.1431 25 14 11.8693 3.8741 -2.5823 26 1 12.0878 2.5938 -1.8624 27 1 12.9430 4.0641 -3.5904 28 1 11.8961 4.9986 -1.6127 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6001 1.9834 -0.8379 34 1 1.7574 1.9278 0.9342 35 1 3.1258 1.4440 -0.0964 36 1 1.5810 -1.7080 1.3121 37 1 1.7790 -0.1422 2.1351 38 1 5.1585 -1.6317 2.3949 39 1 3.9117 -0.7281 3.2878 40 1 3.5723 -2.3763 2.7075 41 1 3.8666 -4.5991 -1.5347 42 1 5.2610 -2.6712 -2.7331 43 1 5.1411 0.5003 -0.6645 44 1 6.8278 0.2086 -5.3933 45 1 8.5867 0.3968 -5.1963 46 1 7.6761 -0.6629 -4.0935 47 1 8.2145 2.8013 -5.1020 48 1 7.4455 3.4870 -3.6505 49 1 10.3699 5.6527 -4.2160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338826944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:21 Heat of formation + Delta-G solvation = 13.711938 kcal Electronic energy + Delta-G solvation = -30129.052039 eV Core-core repulsion = 26093.600083 eV Total energy + Delta-G solvation = -4035.451956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69828 -40.22284 -38.10235 -37.53412 -35.78210 -34.49073 -33.96001 -32.64583 -30.06638 -29.14683 -28.07237 -27.45823 -27.00082 -26.30953 -24.68711 -23.23719 -22.74259 -21.14406 -20.53536 -19.92259 -19.19066 -18.08949 -16.98547 -16.71901 -16.19748 -16.08728 -15.61884 -15.30299 -15.05402 -14.96125 -14.52979 -14.35391 -14.13353 -13.89872 -13.59183 -13.31046 -13.18004 -12.97554 -12.61569 -12.50838 -12.48995 -12.31203 -12.18495 -12.06559 -11.99558 -11.79489 -11.37988 -11.15249 -11.08558 -10.96903 -10.93900 -10.86438 -10.81590 -10.65678 -10.43629 -10.26561 -9.72809 -9.01607 -8.93577 -8.54603 -8.15816 -7.88309 -6.15878 -4.21667 1.34406 1.92061 2.15489 2.76068 2.92230 3.24136 3.31773 3.36008 3.61189 3.83023 4.08500 4.35109 4.47151 4.51222 4.61587 4.69764 4.81038 4.91541 5.00176 5.19162 5.23945 5.26239 5.33810 5.39349 5.44272 5.48959 5.55926 5.61357 5.63025 5.74212 5.78266 5.85190 5.91949 5.93331 6.04231 6.06797 6.08840 6.11837 6.43256 6.68280 6.76522 6.86420 7.07118 7.19205 7.28601 7.68063 7.75319 7.81164 8.05717 8.08221 8.49453 8.82984 9.43800 10.92348 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002906 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.898266 B = 9632.022946 C =10062.703349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.121 4.121 5 C 0.156 3.844 6 H 0.095 0.905 7 C -0.160 4.160 8 N -0.378 5.378 9 N -0.287 5.287 10 C 0.055 3.945 11 C -0.280 4.280 12 C 0.308 3.692 13 N -0.629 5.629 14 C 0.516 3.484 15 O -0.484 6.484 16 C 0.499 3.501 17 O -0.524 6.524 18 N -0.557 5.557 19 C 0.069 3.931 20 C 0.241 3.759 21 C -0.532 4.532 22 H 0.060 0.940 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.901 3.099 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.183 0.817 42 H 0.172 0.828 43 H 0.419 0.581 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.042 0.958 48 H 0.049 0.951 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.590 -12.671 8.532 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.159 4.159 5 C 0.054 3.946 6 H 0.113 0.887 7 C -0.218 4.218 8 N -0.167 5.167 9 N -0.109 5.109 10 C -0.131 4.131 11 C -0.312 4.312 12 C 0.088 3.912 13 N -0.279 5.279 14 C 0.299 3.701 15 O -0.356 6.356 16 C 0.279 3.721 17 O -0.402 6.402 18 N -0.288 5.288 19 C -0.074 4.074 20 C 0.123 3.877 21 C -0.571 4.571 22 H 0.078 0.922 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.728 3.272 26 H -0.197 1.197 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.200 0.800 42 H 0.190 0.810 43 H 0.257 0.743 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.196 -12.721 9.349 22.617 hybrid contribution 1.456 0.701 -0.004 1.616 sum -14.740 -12.020 9.346 21.192 Atomic orbital electron populations 1.21786 0.94807 1.01671 1.01777 1.21134 0.96197 0.96272 0.98274 1.21930 1.00846 0.95781 1.02284 1.22038 0.92941 1.02217 0.98723 1.21393 0.97060 0.90859 0.85272 0.88732 1.22118 1.01966 1.02443 0.95234 1.48944 1.41066 1.09689 1.16992 1.77329 1.23864 0.88930 1.20782 1.23705 0.96641 1.00141 0.92602 1.21673 1.12777 0.91146 1.05578 1.18156 0.94984 0.87592 0.90422 1.42643 1.49429 1.11222 1.24559 1.20952 0.78573 0.90343 0.80256 1.90607 1.56559 1.42659 1.45781 1.19288 0.82209 0.86894 0.83699 1.90749 1.61892 1.40028 1.47531 1.48130 1.42385 1.15337 1.22902 1.22220 1.01373 0.89706 0.94135 1.19568 0.92595 0.78148 0.97406 1.21410 1.01722 1.01725 1.32218 0.92150 1.24931 0.98616 0.95152 0.95239 1.69935 1.37746 1.05252 1.40101 0.86396 0.83213 0.78195 0.79374 1.19717 1.20811 1.20775 0.92661 0.92619 0.92746 0.91268 0.92203 0.92290 0.93036 0.90126 0.90080 0.91917 0.90662 0.90953 0.79972 0.81040 0.74336 0.92997 0.90893 0.89168 0.93977 0.93263 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.10 -0.93 2.87 -90.62 -0.26 -1.19 16 3 C -0.15 -1.39 8.86 37.16 0.33 -1.06 16 4 C -0.12 -1.02 4.27 -26.73 -0.11 -1.13 16 5 C 0.16 1.48 2.99 -67.93 -0.20 1.28 16 6 H 0.09 0.86 5.17 -51.93 -0.27 0.59 16 7 C -0.16 -1.34 9.45 37.16 0.35 -0.99 16 8 N -0.38 -4.56 2.72 -53.80 -0.15 -4.70 16 9 N -0.29 -3.63 12.41 30.59 0.38 -3.25 16 10 C 0.06 0.65 12.00 -17.43 -0.21 0.45 16 11 C -0.28 -3.85 9.65 -39.77 -0.38 -4.24 16 12 C 0.31 4.24 7.68 -152.86 -1.17 3.07 16 13 N -0.63 -8.98 5.40 -11.80 -0.06 -9.05 16 14 C 0.52 8.62 7.73 -11.65 -0.09 8.53 16 15 O -0.48 -8.10 10.28 5.46 0.06 -8.04 16 16 C 0.50 10.06 7.73 -11.66 -0.09 9.97 16 17 O -0.52 -11.78 16.05 5.49 0.09 -11.69 16 18 N -0.56 -11.72 2.86 -183.53 -0.52 -12.24 16 19 C 0.07 1.18 9.47 59.84 0.57 1.75 16 20 C 0.24 6.06 5.14 -5.19 -0.03 6.03 16 21 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 22 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 25 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.81 7.63 -51.93 -0.40 0.41 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.51 6.35 -51.93 -0.33 0.18 16 36 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.17 2.49 5.83 -52.49 -0.31 2.18 16 43 H 0.42 5.49 6.64 -40.82 -0.27 5.22 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.24 8.02 -51.93 -0.42 0.82 16 46 H 0.09 1.50 5.47 -51.93 -0.28 1.21 16 47 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 48 H 0.05 1.36 7.40 -51.93 -0.38 0.98 16 49 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -31.01 400.06 -7.54 -38.55 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.69 Total: 4.61 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.38 Total: 8.43 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.38 Total: -54.08 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.14 Total: -19.73 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.01 -7.54 -38.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338826944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.263 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds