Wall clock time and date at job start Tue Mar 31 2020 20:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 C 1.53003 * 109.46945 * 120.00008 * 2 1 3 5 5 C 1.53000 * 109.47089 * 173.22637 * 4 2 1 6 6 H 1.09004 * 109.47329 * 53.46416 * 5 4 2 7 7 C 1.53001 * 109.47469 * 173.46272 * 5 4 2 8 8 N 1.46499 * 109.46964 * 293.46359 * 5 4 2 9 9 N 1.40074 * 126.09698 * 300.02289 * 8 5 4 10 10 C 1.30845 * 108.42439 * 179.73544 * 9 8 5 11 11 C 1.39689 * 108.45824 * 0.02562 * 10 9 8 12 12 C 1.35856 * 126.09977 * 119.71359 * 8 5 4 13 13 N 1.39195 * 126.27177 * 0.24477 * 12 8 5 14 14 C 1.34777 * 120.00164 * 180.02562 * 13 12 8 15 15 O 1.21393 * 119.99486 * 359.97438 * 14 13 12 16 16 C 1.49304 * 120.00141 * 179.97438 * 14 13 12 17 17 O 1.21364 * 119.99747 * 355.34864 * 16 14 13 18 18 N 1.34773 * 119.99772 * 175.34864 * 16 14 13 19 19 C 1.46493 * 120.00173 * 1.64551 * 18 16 14 20 20 C 1.46504 * 119.99687 * 181.64498 * 18 16 14 21 21 C 1.50698 * 109.47110 * 89.99860 * 20 18 16 22 22 H 1.08000 * 120.00088 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00056 * 179.97438 * 21 20 18 24 24 N 1.31516 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46992 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47148 * 120.00058 * 25 23 21 28 28 H 1.48500 * 109.46907 * 240.00104 * 25 23 21 29 29 H 1.09005 * 109.46914 * 299.99991 * 1 2 3 30 30 H 1.08995 * 109.46651 * 60.00417 * 1 2 3 31 31 H 1.09003 * 109.46867 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47254 * 239.99562 * 2 1 3 33 33 H 1.09000 * 109.47350 * 305.37904 * 3 2 1 34 34 H 1.09002 * 109.47303 * 65.37834 * 3 2 1 35 35 H 1.09005 * 109.46935 * 185.38009 * 3 2 1 36 36 H 1.09001 * 109.47615 * 53.22145 * 4 2 1 37 37 H 1.09005 * 109.46991 * 293.22377 * 4 2 1 38 38 H 1.08994 * 109.47511 * 175.02015 * 7 5 4 39 39 H 1.09005 * 109.46952 * 295.02683 * 7 5 4 40 40 H 1.09008 * 109.46730 * 55.01909 * 7 5 4 41 41 H 1.07997 * 125.77430 * 179.97438 * 10 9 8 42 42 H 1.08000 * 126.07190 * 179.97438 * 11 10 9 43 43 H 0.97002 * 120.00015 * 359.97438 * 13 12 8 44 44 H 1.08995 * 109.47524 * 83.70174 * 19 18 16 45 45 H 1.09001 * 109.46999 * 203.69911 * 19 18 16 46 46 H 1.09005 * 109.47277 * 323.69744 * 19 18 16 47 47 H 1.08997 * 109.46977 * 209.99726 * 20 18 16 48 48 H 1.09002 * 109.47376 * 330.00164 * 20 18 16 49 49 H 0.97000 * 120.00028 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5605 -0.8703 1.1671 6 1 4.0121 0.1055 0.9881 7 6 4.0888 -1.4427 2.4840 8 7 3.9037 -1.7764 0.0683 9 7 3.5055 -3.1138 -0.0536 10 6 4.0004 -3.5929 -1.1660 11 6 4.7322 -2.5832 -1.7956 12 6 4.6600 -1.4676 -1.0173 13 7 5.2525 -0.2368 -1.2850 14 6 5.9803 -0.0691 -2.4069 15 8 6.1193 -0.9916 -3.1837 16 6 6.6154 1.2512 -2.6944 17 8 6.4075 2.1967 -1.9624 18 7 7.4195 1.3929 -3.7666 19 6 7.6417 0.2615 -4.6702 20 6 8.0714 2.6786 -4.0285 21 6 9.4094 2.7136 -3.3360 22 1 9.7412 1.8631 -2.7590 23 6 10.2104 3.8310 -3.4400 24 7 9.8066 4.8665 -4.1431 25 14 11.8693 3.8741 -2.5823 26 1 12.0878 2.5938 -1.8624 27 1 12.9430 4.0641 -3.5904 28 1 11.8961 4.9986 -1.6127 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6001 1.9834 -0.8379 34 1 1.7574 1.9278 0.9342 35 1 3.1258 1.4440 -0.0964 36 1 1.5810 -1.7080 1.3121 37 1 1.7790 -0.1422 2.1351 38 1 5.1585 -1.6317 2.3949 39 1 3.9117 -0.7281 3.2878 40 1 3.5723 -2.3763 2.7075 41 1 3.8666 -4.5991 -1.5347 42 1 5.2610 -2.6712 -2.7331 43 1 5.1411 0.5003 -0.6645 44 1 6.8278 0.2086 -5.3933 45 1 8.5867 0.3968 -5.1963 46 1 7.6761 -0.6629 -4.0935 47 1 8.2145 2.8013 -5.1020 48 1 7.4455 3.4870 -3.6505 49 1 10.3699 5.6527 -4.2160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338826944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:20 Heat of formation + Delta-G solvation = -3.817566 kcal Electronic energy + Delta-G solvation = -30129.812175 eV Core-core repulsion = 26093.600083 eV Total energy + Delta-G solvation = -4036.212093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.79429 -41.57801 -39.61044 -38.31104 -37.30358 -35.93566 -34.78631 -34.64183 -31.00937 -30.36528 -29.84477 -28.15129 -27.80031 -27.67941 -26.40146 -24.40778 -24.06107 -22.33885 -21.44579 -20.97556 -20.42809 -19.16902 -18.76700 -18.35357 -17.71753 -17.33724 -16.89908 -16.65381 -16.31128 -16.03022 -15.89932 -15.45143 -15.11583 -15.06070 -14.90416 -14.49720 -14.25289 -14.12680 -13.88794 -13.76840 -13.58340 -13.37393 -13.27870 -13.14861 -13.00460 -12.92420 -12.74021 -12.64374 -12.52263 -12.37466 -12.25307 -12.18694 -11.79377 -11.70786 -11.67491 -11.58632 -11.42352 -10.66694 -10.45108 -9.95727 -9.66099 -9.21608 -8.25974 -6.40548 0.00436 0.74409 1.00352 1.38895 1.40168 1.52144 1.65290 1.86774 2.14324 2.34524 2.46269 3.04508 3.13265 3.31344 3.75156 3.77890 3.94730 4.04641 4.16964 4.18477 4.31251 4.37247 4.46157 4.62590 4.67248 4.70116 4.71387 4.73321 4.77050 4.78185 4.86347 4.91194 4.95048 5.00005 5.07313 5.09438 5.14639 5.19443 5.25872 5.35246 5.37519 5.39542 5.66328 5.71117 5.81270 5.94092 5.97258 6.29852 6.54451 6.66016 6.73762 6.90002 7.30000 8.81938 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002906 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.898266 B = 9632.022946 C =10062.703349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.113 4.113 5 C 0.145 3.855 6 H 0.097 0.903 7 C -0.154 4.154 8 N -0.371 5.371 9 N -0.294 5.294 10 C 0.058 3.942 11 C -0.291 4.291 12 C 0.291 3.709 13 N -0.616 5.616 14 C 0.527 3.473 15 O -0.484 6.484 16 C 0.495 3.505 17 O -0.554 6.554 18 N -0.566 5.566 19 C 0.071 3.929 20 C 0.255 3.745 21 C -0.548 4.548 22 H 0.055 0.945 23 C 0.014 3.986 24 N -0.923 5.923 25 Si 0.968 3.032 26 H -0.268 1.268 27 H -0.271 1.271 28 H -0.279 1.279 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.215 0.785 42 H 0.164 0.836 43 H 0.424 0.576 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.036 0.964 48 H 0.015 0.985 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 -13.927 9.982 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.151 4.151 5 C 0.044 3.956 6 H 0.115 0.885 7 C -0.212 4.212 8 N -0.160 5.160 9 N -0.116 5.116 10 C -0.128 4.128 11 C -0.323 4.323 12 C 0.071 3.929 13 N -0.265 5.265 14 C 0.309 3.691 15 O -0.356 6.356 16 C 0.276 3.724 17 O -0.434 6.434 18 N -0.296 5.296 19 C -0.071 4.071 20 C 0.135 3.865 21 C -0.586 4.586 22 H 0.073 0.927 23 C -0.186 4.186 24 N -0.563 5.563 25 Si 0.792 3.208 26 H -0.193 1.193 27 H -0.196 1.196 28 H -0.204 1.204 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.232 0.768 42 H 0.182 0.818 43 H 0.262 0.738 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.118 0.882 47 H 0.054 0.946 48 H 0.034 0.966 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.536 -14.014 10.812 24.222 hybrid contribution 1.462 1.067 -0.445 1.864 sum -15.074 -12.947 10.367 22.412 Atomic orbital electron populations 1.21759 0.93825 1.01812 1.02343 1.21071 0.96983 0.95948 0.97538 1.21934 1.00089 0.95891 1.02900 1.21997 0.91765 1.02113 0.99183 1.21715 0.98084 0.90654 0.85104 0.88470 1.22094 1.00914 1.02966 0.95198 1.49157 1.40212 1.09769 1.16878 1.77309 1.23955 0.89149 1.21177 1.24183 0.95547 1.01129 0.91894 1.21755 1.13175 0.91835 1.05521 1.18197 0.95975 0.87165 0.91565 1.42345 1.48628 1.11859 1.23694 1.20032 0.79177 0.88735 0.81186 1.90610 1.56919 1.42003 1.46056 1.19809 0.81668 0.88011 0.82871 1.90720 1.62781 1.41496 1.48365 1.48093 1.42484 1.15019 1.24039 1.22370 1.02197 0.88509 0.93995 1.19091 0.91569 0.79364 0.96458 1.21651 1.02737 1.01790 1.32454 0.92686 1.25792 1.02323 0.94694 0.95793 1.70036 1.39241 1.05852 1.41130 0.85364 0.78805 0.78212 0.78417 1.19273 1.19601 1.20445 0.91164 0.93008 0.92802 0.94112 0.93013 0.90520 0.94076 0.90766 0.87591 0.93193 0.88155 0.91240 0.76812 0.81844 0.73768 0.91092 0.90826 0.88219 0.94621 0.96643 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 2 C -0.10 -1.69 2.87 -10.79 -0.03 -1.72 16 3 C -0.15 -2.64 8.86 71.98 0.64 -2.00 16 4 C -0.11 -1.67 4.27 30.60 0.13 -1.54 16 5 C 0.15 2.56 2.99 44.99 0.13 2.69 16 6 H 0.10 1.66 5.17 -2.39 -0.01 1.65 16 7 C -0.15 -2.29 9.45 71.98 0.68 -1.61 16 8 N -0.37 -8.58 2.72 -324.13 -0.88 -9.46 16 9 N -0.29 -6.99 12.41 -57.14 -0.71 -7.70 16 10 C 0.06 1.28 12.00 85.19 1.02 2.30 16 11 C -0.29 -7.74 9.65 22.15 0.21 -7.52 16 12 C 0.29 7.83 7.68 131.25 1.01 8.84 16 13 N -0.62 -17.51 5.40 -309.58 -1.67 -19.18 16 14 C 0.53 17.58 7.73 87.22 0.67 18.25 16 15 O -0.48 -15.87 10.28 -3.38 -0.03 -15.90 16 16 C 0.50 20.30 7.73 87.22 0.67 20.98 16 17 O -0.55 -25.64 16.05 -3.29 -0.05 -25.69 16 18 N -0.57 -24.21 2.86 -852.92 -2.44 -26.65 16 19 C 0.07 2.41 9.47 127.77 1.21 3.62 16 20 C 0.26 13.23 5.14 85.63 0.44 13.67 16 21 C -0.55 -30.44 9.39 25.60 0.24 -30.20 16 22 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 23 C 0.01 0.77 5.46 84.65 0.46 1.23 16 24 N -0.92 -53.62 13.29 21.45 0.28 -53.33 16 25 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.94 7.63 -2.39 -0.02 0.93 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.04 0.79 6.35 -2.38 -0.02 0.78 16 36 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 37 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.16 4.61 5.83 -2.91 -0.02 4.59 16 43 H 0.42 11.15 6.64 -92.71 -0.62 10.54 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 2.47 8.02 -2.39 -0.02 2.45 16 46 H 0.10 3.22 5.47 -2.38 -0.01 3.21 16 47 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 48 H 0.02 0.90 7.40 -2.39 -0.02 0.88 16 49 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -67.07 400.06 5.03 -62.04 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.34 Total: 24.88 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 8.16 Total: 25.57 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -5.41 Total: -116.33 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.09 Total: -41.59 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.07 5.03 -62.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338826944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.218 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds