Wall clock time and date at job start Tue Mar 31 2020 20:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 109.47099 * 2 1 4 4 C 1.53000 * 109.47188 * 119.99799 * 2 1 3 5 5 C 1.53003 * 109.46633 * 65.00518 * 4 2 1 6 6 H 1.08996 * 109.46622 * 304.99510 * 5 4 2 7 7 C 1.53003 * 109.47364 * 64.99840 * 5 4 2 8 8 N 1.46501 * 109.46764 * 184.99668 * 5 4 2 9 9 N 1.40073 * 126.10136 * 299.95563 * 8 5 4 10 10 C 1.30849 * 108.42158 * 180.02562 * 9 8 5 11 11 C 1.39692 * 108.45870 * 359.74087 * 10 9 8 12 12 C 1.35862 * 126.09640 * 119.99569 * 8 5 4 13 13 N 1.39195 * 126.27045 * 359.96950 * 12 8 5 14 14 C 1.34777 * 119.99901 * 179.97438 * 13 12 8 15 15 O 1.21386 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.49306 * 119.99799 * 179.97438 * 14 13 12 17 17 O 1.21368 * 120.00222 * 359.72584 * 16 14 13 18 18 N 1.34777 * 119.99803 * 179.97438 * 16 14 13 19 19 C 1.46506 * 120.00271 * 179.97438 * 18 16 14 20 20 C 1.52993 * 109.47563 * 180.02562 * 19 18 16 21 21 C 1.50696 * 109.47432 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00335 * 180.02562 * 21 20 19 24 24 N 1.31523 * 119.99985 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00296 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47112 * 89.99719 * 25 23 21 27 27 H 1.48494 * 109.47201 * 209.99478 * 25 23 21 28 28 H 1.48498 * 109.47011 * 329.99452 * 25 23 21 29 29 H 1.08997 * 109.47510 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47091 * 299.99987 * 1 2 3 31 31 H 1.09005 * 109.47345 * 59.99576 * 1 2 3 32 32 H 1.08997 * 109.47624 * 240.00791 * 2 1 3 33 33 H 1.09000 * 109.46836 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46846 * 300.00248 * 3 2 1 35 35 H 1.09003 * 109.46778 * 60.00352 * 3 2 1 36 36 H 1.08992 * 109.47304 * 305.00347 * 4 2 1 37 37 H 1.09001 * 109.47070 * 184.99800 * 4 2 1 38 38 H 1.08996 * 109.47063 * 59.99946 * 7 5 4 39 39 H 1.08997 * 109.46649 * 180.02562 * 7 5 4 40 40 H 1.08998 * 109.46528 * 299.99854 * 7 5 4 41 41 H 1.08002 * 125.76801 * 179.97438 * 10 9 8 42 42 H 1.08003 * 126.06923 * 180.26669 * 11 10 9 43 43 H 0.96999 * 120.00051 * 359.97438 * 13 12 8 44 44 H 0.96999 * 120.00043 * 0.02562 * 18 16 14 45 45 H 1.08996 * 109.47365 * 300.00749 * 19 18 16 46 46 H 1.09000 * 109.46679 * 60.00307 * 19 18 16 47 47 H 1.08996 * 109.47340 * 300.00701 * 20 19 18 48 48 H 1.09004 * 109.46672 * 59.99938 * 20 19 18 49 49 H 0.96991 * 120.00450 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1879 6 1 0.5563 -2.2706 1.0526 7 6 2.3449 -2.8707 0.0125 8 7 2.0184 -2.8594 2.4363 9 7 3.3180 -2.9699 2.9471 10 6 3.2636 -3.6279 4.0769 11 6 1.9305 -3.9568 4.3334 12 6 1.1767 -3.4783 3.3048 13 7 -0.2038 -3.5964 3.1709 14 6 -0.9195 -4.2409 4.1136 15 8 -0.3602 -4.7189 5.0791 16 6 -2.4003 -4.3671 3.9703 17 8 -2.9601 -3.8848 3.0074 18 7 -3.1160 -5.0120 4.9128 19 6 -4.5691 -5.1354 4.7725 20 6 -5.1335 -5.9047 5.9684 21 6 -6.6281 -6.0321 5.8238 22 1 -7.1257 -5.6072 4.9646 23 6 -7.3604 -6.6911 6.7884 24 7 -6.7545 -7.2090 7.8346 25 14 -9.2130 -6.8496 6.6088 26 1 -9.5337 -8.0958 5.8677 27 1 -9.8384 -6.8994 7.9547 28 1 -9.7397 -5.6796 5.8612 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 1.6053 -0.2618 2.1369 37 1 3.1263 -0.6443 1.2951 38 1 3.4238 -2.7954 0.1478 39 1 2.0562 -3.9208 -0.0314 40 1 2.0598 -2.3767 -0.9163 41 1 4.1065 -3.8717 4.7066 42 1 1.5630 -4.4972 5.1933 43 1 -0.6506 -3.2148 2.3992 44 1 -2.6691 -5.3940 5.6843 45 1 -5.0163 -4.1420 4.7362 46 1 -4.8010 -5.6720 3.8526 47 1 -4.6864 -6.8981 6.0052 48 1 -4.9015 -5.3676 6.8882 49 1 -7.2696 -7.6729 8.5130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344422214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:31 Heat of formation + Delta-G solvation = -8.967278 kcal Electronic energy + Delta-G solvation = -28653.590167 eV Core-core repulsion = 24617.154767 eV Total energy + Delta-G solvation = -4036.435401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83793 -40.41476 -38.53756 -37.92542 -35.75128 -34.82251 -33.99949 -32.92797 -30.14967 -29.94137 -29.18891 -27.61801 -27.21429 -25.94666 -24.16745 -23.56940 -21.90685 -21.10509 -20.73773 -20.01247 -19.79629 -18.73324 -17.54583 -16.86497 -16.31725 -16.27134 -16.00707 -15.36138 -15.28807 -14.96593 -14.73488 -14.55063 -14.46637 -13.97497 -13.90955 -13.71983 -13.61541 -13.20757 -13.08283 -12.80430 -12.65793 -12.38665 -12.37225 -12.00673 -11.84437 -11.68314 -11.35866 -11.31333 -11.24076 -11.13884 -11.11117 -10.96925 -10.72413 -10.64544 -10.47726 -9.89803 -9.57826 -9.31745 -9.17379 -8.84784 -8.47420 -8.31703 -6.14559 -4.18628 1.05033 1.68802 1.90581 2.50835 2.75426 3.23056 3.26056 3.32581 3.35587 3.52621 3.95732 4.28821 4.34016 4.39156 4.49700 4.50765 4.61866 4.76029 4.80426 5.05053 5.10237 5.20628 5.21877 5.22421 5.32341 5.35488 5.39537 5.44477 5.51642 5.57046 5.66631 5.70959 5.76154 5.86307 5.93529 5.95056 6.07475 6.13998 6.42742 6.56679 6.58317 6.64740 6.85240 7.30708 7.46514 7.50811 7.57733 7.67169 7.81686 8.05111 8.21825 8.86788 9.46598 10.96804 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.002055 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.922479 B =13621.885341 C =14886.007395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.120 4.120 5 C 0.157 3.843 6 H 0.095 0.905 7 C -0.161 4.161 8 N -0.381 5.381 9 N -0.285 5.285 10 C 0.057 3.943 11 C -0.276 4.276 12 C 0.302 3.698 13 N -0.627 5.627 14 C 0.515 3.485 15 O -0.481 6.481 16 C 0.505 3.495 17 O -0.529 6.529 18 N -0.679 5.679 19 C 0.118 3.882 20 C 0.011 3.989 21 C -0.525 4.525 22 H 0.060 0.940 23 C 0.060 3.940 24 N -0.891 5.891 25 Si 0.898 3.102 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.186 0.814 42 H 0.174 0.826 43 H 0.420 0.580 44 H 0.412 0.588 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.026 0.974 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.485 12.631 -14.632 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.158 4.158 5 C 0.055 3.945 6 H 0.112 0.888 7 C -0.219 4.219 8 N -0.170 5.170 9 N -0.107 5.107 10 C -0.129 4.129 11 C -0.307 4.307 12 C 0.083 3.917 13 N -0.277 5.277 14 C 0.297 3.703 15 O -0.352 6.352 16 C 0.284 3.716 17 O -0.407 6.407 18 N -0.330 5.330 19 C -0.003 4.003 20 C -0.027 4.027 21 C -0.563 4.563 22 H 0.079 0.921 23 C -0.143 4.143 24 N -0.529 5.529 25 Si 0.726 3.274 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.203 0.797 42 H 0.191 0.809 43 H 0.258 0.742 44 H 0.249 0.751 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.044 0.956 48 H 0.044 0.956 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 21.046 13.138 -15.365 29.183 hybrid contribution -1.582 -0.548 0.547 1.762 sum 19.464 12.590 -14.817 27.512 Atomic orbital electron populations 1.21968 0.94904 1.01977 1.02439 1.21186 0.96104 0.96584 0.97704 1.21819 1.01046 0.95515 1.02007 1.21983 1.02724 0.92351 0.98785 1.21380 0.99478 0.92753 0.80848 0.88756 1.22175 1.02199 1.00855 0.96690 1.49017 1.03949 1.45517 1.18533 1.77364 0.96299 1.23741 1.13262 1.23758 0.97675 0.96898 0.94557 1.21713 0.92068 1.13971 1.02968 1.18117 0.81816 0.98650 0.93115 1.42474 1.03576 1.55374 1.26227 1.20576 0.88987 0.78440 0.82299 1.90725 1.71325 1.43863 1.29260 1.19498 0.86212 0.81319 0.84602 1.90762 1.71408 1.47687 1.30830 1.46239 1.10332 1.52854 1.23552 1.22013 0.74620 1.01518 1.02162 1.19366 0.96354 0.95415 0.91552 1.20986 0.91420 1.36449 1.07464 0.92146 1.25005 0.98966 0.95218 0.95087 1.69953 1.35985 1.36528 1.10480 0.86488 0.84879 0.78607 0.77436 1.20531 1.21135 1.19728 0.92550 0.92320 0.92192 0.90501 0.92560 0.92418 0.92587 0.91291 0.90189 0.90803 0.92047 0.90372 0.79707 0.80914 0.74208 0.75147 0.91606 0.91609 0.95573 0.95562 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.95 37.15 0.33 -0.58 16 2 C -0.10 -0.55 2.78 -90.62 -0.25 -0.80 16 3 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 4 C -0.12 -0.87 4.41 -26.73 -0.12 -0.99 16 5 C 0.16 1.26 3.03 -67.93 -0.21 1.06 16 6 H 0.09 0.67 5.04 -51.93 -0.26 0.41 16 7 C -0.16 -1.13 9.22 37.16 0.34 -0.79 16 8 N -0.38 -4.17 3.30 -53.80 -0.18 -4.34 16 9 N -0.28 -3.35 12.42 30.59 0.38 -2.97 16 10 C 0.06 0.63 12.00 -17.43 -0.21 0.42 16 11 C -0.28 -3.51 9.65 -39.77 -0.38 -3.89 16 12 C 0.30 3.74 7.68 -152.85 -1.17 2.56 16 13 N -0.63 -7.46 5.40 -11.80 -0.06 -7.52 16 14 C 0.52 7.23 7.85 -11.65 -0.09 7.14 16 15 O -0.48 -7.38 13.60 5.46 0.07 -7.31 16 16 C 0.51 7.95 7.88 -11.65 -0.09 7.86 16 17 O -0.53 -9.12 16.48 5.48 0.09 -9.03 16 18 N -0.68 -11.39 5.55 -60.78 -0.34 -11.73 16 19 C 0.12 2.32 5.61 -4.04 -0.02 2.30 16 20 C 0.01 0.25 5.09 -27.89 -0.14 0.11 16 21 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 22 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 25 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.06 0.32 6.46 -51.93 -0.34 -0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.38 6.34 -51.93 -0.33 0.05 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.39 6.46 -51.93 -0.34 0.06 16 41 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.17 2.35 5.83 -52.48 -0.31 2.05 16 43 H 0.42 4.24 7.02 -40.82 -0.29 3.95 16 44 H 0.41 6.53 7.94 -40.82 -0.32 6.20 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -30.75 403.87 -7.96 -38.71 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.64 Total: 5.95 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.09 Total: 1.14 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.54 Total: -51.38 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.16 Total: -16.34 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.75 -7.96 -38.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344422214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.740 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds