Wall clock time and date at job start Tue Mar 31 2020 20:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 109.47099 * 2 1 4 4 C 1.53000 * 109.47188 * 119.99799 * 2 1 3 5 5 C 1.53003 * 109.46633 * 65.00518 * 4 2 1 6 6 H 1.08996 * 109.46622 * 304.99510 * 5 4 2 7 7 C 1.53003 * 109.47364 * 64.99840 * 5 4 2 8 8 N 1.46501 * 109.46764 * 184.99668 * 5 4 2 9 9 N 1.40073 * 126.10136 * 299.95563 * 8 5 4 10 10 C 1.30849 * 108.42158 * 180.02562 * 9 8 5 11 11 C 1.39692 * 108.45870 * 359.74087 * 10 9 8 12 12 C 1.35862 * 126.09640 * 119.99569 * 8 5 4 13 13 N 1.39195 * 126.27045 * 359.96950 * 12 8 5 14 14 C 1.34777 * 119.99901 * 179.97438 * 13 12 8 15 15 O 1.21386 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.49306 * 119.99799 * 179.97438 * 14 13 12 17 17 O 1.21368 * 120.00222 * 359.72584 * 16 14 13 18 18 N 1.34777 * 119.99803 * 179.97438 * 16 14 13 19 19 C 1.46506 * 120.00271 * 179.97438 * 18 16 14 20 20 C 1.52993 * 109.47563 * 180.02562 * 19 18 16 21 21 C 1.50696 * 109.47432 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00335 * 180.02562 * 21 20 19 24 24 N 1.31523 * 119.99985 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00296 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47112 * 89.99719 * 25 23 21 27 27 H 1.48494 * 109.47201 * 209.99478 * 25 23 21 28 28 H 1.48498 * 109.47011 * 329.99452 * 25 23 21 29 29 H 1.08997 * 109.47510 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47091 * 299.99987 * 1 2 3 31 31 H 1.09005 * 109.47345 * 59.99576 * 1 2 3 32 32 H 1.08997 * 109.47624 * 240.00791 * 2 1 3 33 33 H 1.09000 * 109.46836 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46846 * 300.00248 * 3 2 1 35 35 H 1.09003 * 109.46778 * 60.00352 * 3 2 1 36 36 H 1.08992 * 109.47304 * 305.00347 * 4 2 1 37 37 H 1.09001 * 109.47070 * 184.99800 * 4 2 1 38 38 H 1.08996 * 109.47063 * 59.99946 * 7 5 4 39 39 H 1.08997 * 109.46649 * 180.02562 * 7 5 4 40 40 H 1.08998 * 109.46528 * 299.99854 * 7 5 4 41 41 H 1.08002 * 125.76801 * 179.97438 * 10 9 8 42 42 H 1.08003 * 126.06923 * 180.26669 * 11 10 9 43 43 H 0.96999 * 120.00051 * 359.97438 * 13 12 8 44 44 H 0.96999 * 120.00043 * 0.02562 * 18 16 14 45 45 H 1.08996 * 109.47365 * 300.00749 * 19 18 16 46 46 H 1.09000 * 109.46679 * 60.00307 * 19 18 16 47 47 H 1.08996 * 109.47340 * 300.00701 * 20 19 18 48 48 H 1.09004 * 109.46672 * 59.99938 * 20 19 18 49 49 H 0.96991 * 120.00450 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1879 6 1 0.5563 -2.2706 1.0526 7 6 2.3449 -2.8707 0.0125 8 7 2.0184 -2.8594 2.4363 9 7 3.3180 -2.9699 2.9471 10 6 3.2636 -3.6279 4.0769 11 6 1.9305 -3.9568 4.3334 12 6 1.1767 -3.4783 3.3048 13 7 -0.2038 -3.5964 3.1709 14 6 -0.9195 -4.2409 4.1136 15 8 -0.3602 -4.7189 5.0791 16 6 -2.4003 -4.3671 3.9703 17 8 -2.9601 -3.8848 3.0074 18 7 -3.1160 -5.0120 4.9128 19 6 -4.5691 -5.1354 4.7725 20 6 -5.1335 -5.9047 5.9684 21 6 -6.6281 -6.0321 5.8238 22 1 -7.1257 -5.6072 4.9646 23 6 -7.3604 -6.6911 6.7884 24 7 -6.7545 -7.2090 7.8346 25 14 -9.2130 -6.8496 6.6088 26 1 -9.5337 -8.0958 5.8677 27 1 -9.8384 -6.8994 7.9547 28 1 -9.7397 -5.6796 5.8612 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 1.6053 -0.2618 2.1369 37 1 3.1263 -0.6443 1.2951 38 1 3.4238 -2.7954 0.1478 39 1 2.0562 -3.9208 -0.0314 40 1 2.0598 -2.3767 -0.9163 41 1 4.1065 -3.8717 4.7066 42 1 1.5630 -4.4972 5.1933 43 1 -0.6506 -3.2148 2.3992 44 1 -2.6691 -5.3940 5.6843 45 1 -5.0163 -4.1420 4.7362 46 1 -4.8010 -5.6720 3.8526 47 1 -4.6864 -6.8981 6.0052 48 1 -4.9015 -5.3676 6.8882 49 1 -7.2696 -7.6729 8.5130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344422214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:30 Heat of formation + Delta-G solvation = -27.613373 kcal Electronic energy + Delta-G solvation = -28654.398723 eV Core-core repulsion = 24617.154767 eV Total energy + Delta-G solvation = -4037.243956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.80584 -41.57009 -39.78171 -38.52565 -37.08843 -36.14550 -34.84402 -34.61988 -31.75125 -30.92117 -30.15608 -28.06727 -27.77376 -27.52868 -25.69805 -24.29857 -23.23384 -22.54356 -21.63940 -21.08748 -20.52517 -19.69820 -18.60288 -18.58556 -17.78521 -17.43584 -16.70063 -16.52842 -16.47121 -16.33871 -15.92833 -15.68352 -15.41618 -15.16083 -14.76213 -14.64138 -14.46410 -14.30872 -14.20993 -14.04457 -13.37451 -13.26191 -13.18783 -12.94798 -12.90794 -12.88301 -12.54586 -12.52392 -12.43486 -12.33870 -12.28229 -11.81486 -11.79263 -11.67385 -11.47363 -11.45135 -11.40394 -10.85381 -10.61188 -10.26246 -10.01367 -9.29429 -8.22692 -6.33494 -0.10450 0.64855 0.90859 1.44053 1.44336 1.54746 1.57565 1.78990 2.05233 2.33757 2.46433 3.12609 3.18167 3.29533 3.71366 3.82022 3.96022 4.02128 4.11403 4.17827 4.29612 4.37257 4.39336 4.46067 4.58281 4.68795 4.73790 4.74143 4.80678 4.82164 4.83195 4.94134 4.99420 5.00378 5.04830 5.08743 5.16823 5.28723 5.39913 5.42915 5.47136 5.56247 5.62791 5.75011 5.76737 5.85552 6.12835 6.19728 6.47439 6.67934 6.73843 6.82337 7.36042 8.89120 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.002055 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.922479 B =13621.885341 C =14886.007395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.111 4.111 5 C 0.148 3.852 6 H 0.105 0.895 7 C -0.156 4.156 8 N -0.376 5.376 9 N -0.296 5.296 10 C 0.059 3.941 11 C -0.292 4.292 12 C 0.289 3.711 13 N -0.612 5.612 14 C 0.524 3.476 15 O -0.495 6.495 16 C 0.513 3.487 17 O -0.540 6.540 18 N -0.681 5.681 19 C 0.138 3.862 20 C 0.017 3.983 21 C -0.543 4.543 22 H 0.066 0.934 23 C 0.004 3.996 24 N -0.927 5.927 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.263 1.263 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.215 0.785 42 H 0.162 0.838 43 H 0.429 0.571 44 H 0.417 0.583 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.009 0.991 48 H 0.009 0.991 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.605 13.400 -16.320 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.150 4.150 5 C 0.047 3.953 6 H 0.123 0.877 7 C -0.213 4.213 8 N -0.165 5.165 9 N -0.118 5.118 10 C -0.127 4.127 11 C -0.324 4.324 12 C 0.069 3.931 13 N -0.262 5.262 14 C 0.305 3.695 15 O -0.367 6.367 16 C 0.293 3.707 17 O -0.419 6.419 18 N -0.332 5.332 19 C 0.015 3.985 20 C -0.021 4.021 21 C -0.581 4.581 22 H 0.084 0.916 23 C -0.195 4.195 24 N -0.567 5.567 25 Si 0.791 3.209 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.187 1.187 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.232 0.768 42 H 0.180 0.820 43 H 0.269 0.731 44 H 0.254 0.746 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.027 0.973 48 H 0.027 0.973 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.191 13.936 -17.096 30.587 hybrid contribution -1.535 -0.747 1.043 2.000 sum 19.657 13.189 -16.053 28.601 Atomic orbital electron populations 1.21989 0.94952 1.02135 1.02389 1.21163 0.95969 0.96630 0.97215 1.21822 1.01165 0.95338 1.02082 1.21896 1.02111 0.91850 0.99093 1.21707 1.00310 0.93089 0.80165 0.87732 1.22149 1.01483 1.00557 0.97148 1.49257 1.03403 1.44976 1.18888 1.77340 0.96795 1.23999 1.13643 1.24211 0.97917 0.96051 0.94487 1.21774 0.93125 1.14471 1.02986 1.18173 0.81803 0.99351 0.93751 1.42240 1.03560 1.54521 1.25876 1.20065 0.88046 0.78807 0.82567 1.90739 1.71242 1.44746 1.29971 1.19631 0.86913 0.80383 0.83817 1.90756 1.71948 1.47972 1.31181 1.46030 1.09322 1.53563 1.24281 1.21545 0.76157 1.00693 1.00068 1.19190 0.95475 0.94818 0.92569 1.21444 0.93001 1.36139 1.07560 0.91602 1.25906 1.03825 0.94937 0.94787 1.70071 1.37802 1.37471 1.11352 0.85425 0.79110 0.78928 0.77465 1.19864 1.20940 1.18727 0.92287 0.93209 0.91451 0.89217 0.92404 0.91588 0.93290 0.92705 0.90926 0.91621 0.92761 0.87994 0.76821 0.82023 0.73136 0.74610 0.91621 0.91575 0.97273 0.97278 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.95 71.98 0.64 -0.94 16 2 C -0.09 -0.87 2.78 -10.79 -0.03 -0.90 16 3 C -0.15 -1.38 9.19 71.99 0.66 -0.72 16 4 C -0.11 -1.49 4.41 30.60 0.14 -1.35 16 5 C 0.15 2.17 3.03 44.99 0.14 2.31 16 6 H 0.10 1.31 5.04 -2.39 -0.01 1.30 16 7 C -0.16 -1.91 9.22 71.98 0.66 -1.24 16 8 N -0.38 -7.85 3.30 -324.13 -1.07 -8.92 16 9 N -0.30 -6.63 12.42 -57.13 -0.71 -7.34 16 10 C 0.06 1.23 12.00 85.19 1.02 2.25 16 11 C -0.29 -7.28 9.65 22.15 0.21 -7.07 16 12 C 0.29 6.92 7.68 131.25 1.01 7.93 16 13 N -0.61 -14.00 5.40 -309.59 -1.67 -15.67 16 14 C 0.52 14.37 7.85 87.22 0.68 15.06 16 15 O -0.50 -15.09 13.60 -3.36 -0.05 -15.14 16 16 C 0.51 15.77 7.88 87.22 0.69 16.46 16 17 O -0.54 -17.99 16.48 -3.30 -0.05 -18.05 16 18 N -0.68 -22.68 5.55 -464.56 -2.58 -25.26 16 19 C 0.14 5.38 5.61 86.38 0.48 5.87 16 20 C 0.02 0.82 5.09 29.84 0.15 0.97 16 21 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 22 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 23 C 0.00 0.23 5.46 84.65 0.46 0.69 16 24 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 25 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 29 H 0.06 0.56 6.46 -2.39 -0.02 0.54 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.09 0.65 6.34 -2.39 -0.02 0.64 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.75 6.46 -2.39 -0.02 0.73 16 41 H 0.22 2.88 8.06 -2.91 -0.02 2.85 16 42 H 0.16 4.41 5.83 -2.91 -0.02 4.39 16 43 H 0.43 8.10 7.02 -92.71 -0.65 7.45 16 44 H 0.42 13.28 7.94 -92.71 -0.74 12.54 16 45 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -64.94 403.87 2.93 -62.00 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.41 Total: 26.82 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 7.16 Total: 10.50 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -5.74 Total: -110.69 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.10 Total: -33.19 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -64.94 2.93 -62.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344422214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.391 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds