Wall clock time and date at job start Tue Mar 31 2020 20:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46916 * 2 1 4 4 C 1.53002 * 109.46979 * 119.99657 * 2 1 3 5 5 C 1.52994 * 109.46976 * 65.92944 * 4 2 1 6 6 H 1.09001 * 109.47368 * 305.34069 * 5 4 2 7 7 C 1.53010 * 109.47012 * 185.34172 * 5 4 2 8 8 N 1.46505 * 109.47464 * 65.34394 * 5 4 2 9 9 N 1.40083 * 126.09619 * 59.99262 * 8 5 4 10 10 C 1.30844 * 108.41613 * 180.02562 * 9 8 5 11 11 C 1.39691 * 108.46618 * 0.02562 * 10 9 8 12 12 C 1.35847 * 126.09986 * 240.00164 * 8 5 4 13 13 N 1.39203 * 126.27085 * 359.97438 * 12 8 5 14 14 C 1.34776 * 120.00104 * 179.97438 * 13 12 8 15 15 O 1.21400 * 119.99949 * 359.97438 * 14 13 12 16 16 C 1.49303 * 120.00116 * 179.97438 * 14 13 12 17 17 O 1.21369 * 120.00012 * 0.02562 * 16 14 13 18 18 N 1.34776 * 120.00107 * 179.97438 * 16 14 13 19 19 C 1.46503 * 120.00405 * 180.02562 * 18 16 14 20 20 C 1.52995 * 109.47361 * 180.02562 * 19 18 16 21 21 C 1.50703 * 109.46921 * 180.02562 * 20 19 18 22 22 H 1.07994 * 120.00286 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99905 * 180.02562 * 21 20 19 24 24 N 1.31519 * 119.99992 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00051 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47018 * 59.99667 * 25 23 21 27 27 H 1.48497 * 109.47026 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47045 * 300.00120 * 25 23 21 29 29 H 1.09000 * 109.47157 * 54.77748 * 1 2 3 30 30 H 1.08997 * 109.46506 * 174.77300 * 1 2 3 31 31 H 1.08996 * 109.47102 * 294.77031 * 1 2 3 32 32 H 1.08999 * 109.47537 * 239.99810 * 2 1 3 33 33 H 1.08993 * 109.46948 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46601 * 300.00092 * 3 2 1 35 35 H 1.08999 * 109.46713 * 59.99856 * 3 2 1 36 36 H 1.08993 * 109.47132 * 305.92400 * 4 2 1 37 37 H 1.09001 * 109.46913 * 185.92707 * 4 2 1 38 38 H 1.09002 * 109.46881 * 295.05534 * 7 5 4 39 39 H 1.08997 * 109.46660 * 55.05650 * 7 5 4 40 40 H 1.08995 * 109.46926 * 175.05722 * 7 5 4 41 41 H 1.07999 * 125.76675 * 180.26424 * 10 9 8 42 42 H 1.07998 * 126.07537 * 179.97438 * 11 10 9 43 43 H 0.97003 * 119.99646 * 359.97100 * 13 12 8 44 44 H 0.97003 * 120.00258 * 0.02562 * 18 16 14 45 45 H 1.09000 * 109.46983 * 300.00712 * 19 18 16 46 46 H 1.09003 * 109.46680 * 59.99653 * 19 18 16 47 47 H 1.08995 * 109.47186 * 299.99836 * 20 19 18 48 48 H 1.08998 * 109.46993 * 60.00059 * 20 19 18 49 49 H 0.96994 * 119.99963 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6552 -2.2002 1.1771 6 1 0.5793 -2.2889 1.0271 7 6 2.0469 -2.8934 2.4837 8 7 2.3581 -2.8337 0.0586 9 7 3.7472 -2.9197 -0.1008 10 6 3.9966 -3.5533 -1.2181 11 6 2.7803 -3.8949 -1.8141 12 6 1.7790 -3.4421 -1.0091 13 7 0.4128 -3.5774 -1.2388 14 6 -0.0251 -4.2077 -2.3467 15 8 0.7719 -4.6570 -3.1446 16 6 -1.4905 -4.3533 -2.5928 17 8 -2.2874 -3.9037 -1.7954 18 7 -1.9284 -4.9831 -3.7010 19 6 -3.3663 -5.1255 -3.9428 20 6 -3.5906 -5.8730 -5.2587 21 6 -5.0698 -6.0190 -5.5077 22 1 -5.7789 -5.6190 -4.7981 23 6 -5.5178 -6.6641 -6.6409 24 7 -4.6542 -7.1525 -7.5043 25 14 -7.3511 -6.8456 -6.9492 26 1 -7.9747 -5.5004 -7.0319 27 1 -7.5688 -7.5710 -8.2265 28 1 -7.9673 -7.6091 -5.8344 29 1 -0.3633 0.5927 -0.8395 30 1 -0.3632 -1.0234 -0.0936 31 1 -0.3633 0.4306 0.9331 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.5926 -0.2722 2.1360 37 1 3.1248 -0.6302 1.3039 38 1 3.1316 -2.8816 2.5903 39 1 1.5934 -2.3677 3.3239 40 1 1.6946 -3.9248 2.4675 41 1 4.9772 -3.7780 -1.6110 42 1 2.6558 -4.4244 -2.7471 43 1 -0.2241 -3.2181 -0.6014 44 1 -1.2916 -5.3421 -4.3385 45 1 -3.8185 -5.6866 -3.1249 46 1 -3.8242 -4.1382 -4.0027 47 1 -3.1385 -5.3123 -6.0767 48 1 -3.1328 -6.8604 -5.1983 49 1 -4.9694 -7.6060 -8.3017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344422217.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:35 Heat of formation + Delta-G solvation = -9.131280 kcal Electronic energy + Delta-G solvation = -29133.728542 eV Core-core repulsion = 25097.286029 eV Total energy + Delta-G solvation = -4036.442513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86383 -40.41491 -38.52312 -37.66491 -35.73877 -34.80324 -34.09474 -32.92747 -30.23431 -29.96283 -29.18842 -27.57219 -27.11467 -25.94144 -24.15128 -23.35585 -21.83324 -21.06848 -20.81001 -20.10084 -19.92106 -18.62876 -17.55392 -16.85291 -16.35489 -16.26748 -15.84151 -15.32092 -15.26062 -15.01847 -14.64438 -14.53345 -14.33314 -14.23995 -13.84842 -13.72327 -13.36490 -13.13484 -13.07392 -12.70822 -12.60604 -12.41944 -12.36520 -12.17792 -11.91809 -11.67026 -11.32147 -11.31550 -11.10281 -11.09532 -11.04753 -10.96896 -10.73608 -10.62848 -10.46705 -9.89789 -9.57601 -9.32717 -9.15359 -8.84490 -8.47013 -8.30304 -6.14331 -4.18508 1.05826 1.70036 1.91964 2.52275 2.76505 3.23549 3.27647 3.32262 3.34270 3.52470 3.95768 4.33971 4.35544 4.39056 4.50012 4.58674 4.68066 4.79304 4.87853 5.08913 5.15919 5.20221 5.22583 5.28141 5.32889 5.36182 5.41614 5.50183 5.51567 5.61970 5.67740 5.73985 5.83580 5.91674 5.96897 5.99922 6.07695 6.14107 6.42974 6.57548 6.58623 6.65882 6.86252 7.31096 7.46700 7.50984 7.59077 7.67491 7.81744 8.05340 8.21953 8.86702 9.46682 10.97036 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.002155 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.525786 B =12988.023462 C =13681.030528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.122 4.122 5 C 0.156 3.844 6 H 0.094 0.906 7 C -0.161 4.161 8 N -0.377 5.377 9 N -0.284 5.284 10 C 0.057 3.943 11 C -0.276 4.276 12 C 0.303 3.697 13 N -0.627 5.627 14 C 0.515 3.485 15 O -0.481 6.481 16 C 0.505 3.495 17 O -0.529 6.529 18 N -0.679 5.679 19 C 0.118 3.882 20 C 0.011 3.989 21 C -0.525 4.525 22 H 0.060 0.940 23 C 0.060 3.940 24 N -0.892 5.892 25 Si 0.899 3.101 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.185 0.815 42 H 0.173 0.827 43 H 0.419 0.581 44 H 0.412 0.588 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.026 0.974 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.088 12.578 18.150 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.160 4.160 5 C 0.055 3.945 6 H 0.112 0.888 7 C -0.219 4.219 8 N -0.166 5.166 9 N -0.106 5.106 10 C -0.130 4.130 11 C -0.308 4.308 12 C 0.084 3.916 13 N -0.276 5.276 14 C 0.297 3.703 15 O -0.352 6.352 16 C 0.283 3.717 17 O -0.407 6.407 18 N -0.330 5.330 19 C -0.003 4.003 20 C -0.026 4.026 21 C -0.564 4.564 22 H 0.078 0.922 23 C -0.142 4.142 24 N -0.530 5.530 25 Si 0.726 3.274 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.201 1.201 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.202 0.798 42 H 0.190 0.810 43 H 0.257 0.743 44 H 0.248 0.752 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.044 0.956 48 H 0.044 0.956 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.431 13.072 19.023 28.333 hybrid contribution -1.402 -0.560 -0.927 1.771 sum 15.029 12.511 18.096 26.644 Atomic orbital electron populations 1.21926 0.94977 1.01520 1.02360 1.21136 0.95860 0.96616 0.98285 1.21787 1.00971 0.95506 1.01826 1.22038 1.02947 0.92230 0.98753 1.21395 0.95210 0.93216 0.84722 0.88824 1.22135 1.03672 1.00837 0.95271 1.48951 1.04246 1.46201 1.17185 1.77354 0.88888 1.24091 1.20242 1.23736 0.99487 0.97050 0.92677 1.21700 0.89512 1.14206 1.05363 1.18091 0.83758 0.98731 0.91020 1.42498 1.04148 1.56322 1.24678 1.20575 0.90597 0.78340 0.80819 1.90729 1.56056 1.44484 1.43907 1.19506 0.87167 0.81199 0.83793 1.90762 1.55838 1.48527 1.45560 1.46238 1.11343 1.53878 1.21515 1.22011 0.75707 1.01406 1.01176 1.19359 0.98010 0.95555 0.89708 1.20952 0.91104 1.37514 1.06844 0.92201 1.24999 0.98139 0.95186 0.95893 1.69943 1.34043 1.37460 1.11531 0.86550 0.84930 0.78380 0.77543 1.20090 1.21202 1.20085 0.92172 0.93275 0.92240 0.91234 0.92677 0.92575 0.92634 0.90036 0.90067 0.90736 0.90574 0.92002 0.79793 0.80986 0.74285 0.75156 0.91621 0.91614 0.95582 0.95580 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.84 37.16 0.33 -0.82 16 2 C -0.10 -0.80 2.87 -90.61 -0.26 -1.06 16 3 C -0.14 -1.02 9.19 37.16 0.34 -0.68 16 4 C -0.12 -0.86 4.28 -26.73 -0.11 -0.97 16 5 C 0.16 1.23 2.97 -67.93 -0.20 1.03 16 6 H 0.09 0.67 5.18 -51.93 -0.27 0.40 16 7 C -0.16 -1.11 9.46 37.16 0.35 -0.76 16 8 N -0.38 -3.97 2.68 -53.80 -0.14 -4.12 16 9 N -0.28 -3.24 12.42 30.59 0.38 -2.87 16 10 C 0.06 0.61 12.00 -17.43 -0.21 0.40 16 11 C -0.28 -3.47 9.65 -39.77 -0.38 -3.85 16 12 C 0.30 3.67 7.68 -152.86 -1.17 2.49 16 13 N -0.63 -7.40 5.40 -11.80 -0.06 -7.47 16 14 C 0.52 7.21 7.85 -11.65 -0.09 7.12 16 15 O -0.48 -7.37 13.60 5.45 0.07 -7.29 16 16 C 0.50 7.95 7.88 -11.65 -0.09 7.86 16 17 O -0.53 -9.12 16.48 5.48 0.09 -9.03 16 18 N -0.68 -11.39 5.55 -60.78 -0.34 -11.73 16 19 C 0.12 2.32 5.61 -4.04 -0.02 2.30 16 20 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 21 C -0.53 -14.04 9.11 -34.44 -0.31 -14.35 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 25 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.39 6.19 -51.93 -0.32 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.73 7.61 -51.93 -0.40 0.33 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.17 2.33 5.83 -52.49 -0.31 2.03 16 43 H 0.42 4.28 6.48 -40.82 -0.26 4.02 16 44 H 0.41 6.54 7.94 -40.82 -0.32 6.21 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -30.48 405.53 -8.02 -38.49 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.76 Total: 6.51 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.08 Total: 0.39 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.57 Total: -51.03 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.16 Total: -16.32 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.48 -8.02 -38.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344422217.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.361 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds